Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000053 Camellia sinensis var. sinensis HOM05D003811 ORTHO05D004470 1.1e-201 706.4 372 100.0
Cfa013454 Carpinus fangiana HOM05D003811 ORTHO05D004470 1.1e-103 380.9 350 65.1
TAR620G0001 Trochodendron aralioides HOM05D003811 ORTHO05D004470 5.0e-101 372.1 332 66.9
Dinv25445 Davidia involucrata HOM05D003811 ORTHO05D004470 4.9e-96 355.5 355 65.1
Rhsim03G0266200 Rhododendron simsii HOM05D003811 ORTHO05D004470 3.2e-95 352.8 360 62.5
vmacro05996 Vaccinium macrocarpon HOM05D003811 ORTHO05D004470 9.2e-95 351.3 359 61.3
CiPaw.07G197300 Carya illinoinensis HOM05D003811 ORTHO05D004470 7.8e-94 348.2 340 62.1
Duzib168G0111 Durio zibethinus HOM05D003811 ORTHO05D004470 1.3e-93 347.4 364 60.4
DCAR_018030 Daucus carota HOM05D003811 ORTHO05D004470 1.5e-92 344.0 360 57.5
vmacro20813 Vaccinium macrocarpon HOM05D003832 ORTHO05D004365 8.1e-91 338.2 328 61.3
RcHm_v2.0_Chr4g0399481 Rosa chinensis HOM05D003811 ORTHO05D004470 1.5e-89 334.0 350 57.4
CAN.G192.5 Capsicum annuum HOM05D003811 ORTHO05D004470 2.0e-89 333.6 371 56.1
MD13G1239300 Malus domestica HOM05D003811 ORTHO05D004470 4.9e-88 328.9 377 54.9
FAN17G0360 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.9e-87 327.0 357 55.5
FAN22G1182 Fragaria x ananassa HOM05D003811 ORTHO05D004470 2.4e-87 326.6 357 55.5
Thecc.09G186300 Theobroma cacao HOM05D003811 ORTHO05D004470 5.4e-87 325.5 358 57.5
GSVIVG01010855001 Vitis vinifera HOM05D003811 ORTHO05D004470 7.1e-87 325.1 345 58.6
Peaxi162Scf01038g00011 Petunia axillaris HOM05D003811 ORTHO05D004470 9.2e-87 324.7 369 54.5
Sabra18G0116100 Salix brachista HOM05D003811 ORTHO05D004470 9.2e-87 324.7 379 55.4
Nitab4.5_0000491g0080 Nicotiana tabacum HOM05D003811 ORTHO05D004470 1.6e-86 323.9 367 54.8
FvH4_4g07270 Fragaria vesca HOM05D003811 ORTHO05D004470 2.1e-86 323.6 356 55.6
Hma1.2p1_1326F.1_g275850 Hydrangea macrophylla HOM05D003811 ORTHO05D004470 2.1e-86 323.6 352 61.1
DCAR_014667 Daucus carota HOM05D003811 ORTHO05D004470 2.7e-86 323.2 348 56.0
FAN12G0553 Fragaria x ananassa HOM05D003811 ORTHO05D004470 6.0e-86 322.0 357 55.7
Cc06_g20840 Coffea canephora HOM05D003811 ORTHO05D004470 1.3e-85 320.9 391 53.5
Rhsim01G0116800 Rhododendron simsii HOM05D003811 ORTHO05D004470 3.0e-85 319.7 328 58.2
Nitab4.5_0000949g0010 Nicotiana tabacum HOM05D003811 ORTHO05D004470 1.5e-84 317.4 370 54.1
PGSC0003DMG400022983 Solanum tuberosum HOM05D003811 ORTHO05D004470 1.5e-84 317.4 376 54.0
MBI13_g34046_MAGBIO Magnolia biondii HOM05D003811 ORTHO05D004470 3.3e-84 316.2 326 60.1
Sopen07g004460 Solanum pennellii HOM05D003811 ORTHO05D004470 3.3e-84 316.2 373 53.4
FAN07G1538 Fragaria x ananassa HOM05D003811 ORTHO05D004470 3.6e-83 312.8 357 53.5
Nitab4.5_0000949g0020 Nicotiana tabacum HOM05D003811 ORTHO05D004470 1.1e-82 311.2 367 53.7
Lj5C615T3 Lonicera japonica HOM05D003811 ORTHO05D004470 1.4e-82 310.8 370 53.5
Oeu018819.1 Olea europaea HOM05D003811 ORTHO05D004470 1.4e-82 310.8 361 54.3
Dinv41179 Davidia involucrata HOM05D003811 ORTHO05D004470 2.3e-82 310.1 355 57.7
Solyc07g008540.3 Solanum lycopersicum HOM05D003811 ORTHO05D004470 2.3e-82 310.1 373 52.5
Duzib150G1212 Durio zibethinus HOM05D003811 ORTHO05D004470 4.0e-82 309.3 381 52.5
Manes.06G019300 Manihot esculenta HOM05D003811 ORTHO05D004470 5.2e-82 308.9 350 56.6
Ciclev10008308m.g Citrus clementina HOM05D003811 ORTHO05D004470 4.9e-80 302.4 369 54.2
Potri.006G075200 Populus trichocarpa HOM05D003811 ORTHO05D004470 8.4e-80 301.6 373 52.0
ClCG11G011760 Citrullus lanatus HOM05D003811 ORTHO05D004470 1.1e-79 301.2 351 54.4
Aqoxy7G02811 Aquilegia oxysepala HOM05D003811 ORTHO05D004470 2.4e-79 300.1 351 54.1
TWI63G0214 Tripterygium wilfordii HOM05D003811 ORTHO05D004470 2.4e-79 300.1 327 57.5
Oeu006847.1 Olea europaea HOM05D003811 ORTHO05D004470 1.2e-78 297.7 350 54.3
Hund13780 Selenicereus undatus HOM05D003811 ORTHO05D004470 3.5e-78 296.2 412 49.0
MELO3C003975.2 Cucumis melo HOM05D003811 ORTHO05D004470 6.0e-78 295.4 362 53.3
Nn8g40778 Nelumbo nucifera HOM05D003811 ORTHO05D004470 7.8e-78 295.0 353 57.8
CsaV3_2G008720 Cucumis sativus L. HOM05D003811 ORTHO05D004470 1.0e-77 294.7 357 53.2
MD16G1248400 Malus domestica HOM05D003811 ORTHO05D004470 1.7e-77 293.9 381 51.7
Cpa.g.sc95.8 Carica papaya HOM05D003811 ORTHO05D004470 1.1e-76 291.2 367 52.9
Migut.L01879 Erythranthe guttata HOM05D003811 ORTHO05D004470 1.1e-76 291.2 332 54.5
Ah.10g036890 Amaranthus hybridus HOM05D003811 ORTHO05D004470 3.3e-76 289.7 408 52.0
FAN02G0923 Fragaria x ananassa HOM05D003811 ORTHO05D004470 3.3e-76 289.7 408 45.8
Potri.018G142100 Populus trichocarpa HOM05D003811 ORTHO05D004470 3.3e-76 289.7 394 51.0
Sabra06G0055900 Salix brachista HOM05D003811 ORTHO05D004470 4.3e-76 289.3 368 51.6
Sc10g0001710 Simmondsia chinensis HOM05D003811 ORTHO05D004470 7.3e-76 288.5 347 54.5
FvH4_6g24780 Fragaria vesca HOM05D003811 ORTHO05D004470 9.6e-76 288.1 360 49.7
Oeu019552.1 Olea europaea HOM05D003811 ORTHO05D004470 3.6e-75 286.2 366 50.0
Oeu034800.1 Olea europaea HOM05D003811 ORTHO05D004470 1.8e-74 283.9 352 53.1
Lj5C612T1 Lonicera japonica HOM05D003811 ORTHO05D004470 2.0e-73 280.4 366 50.0
Atru.chr7.754 Acer truncatum HOM05D003811 ORTHO05D004470 2.2e-72 276.9 333 57.7
Atru.chr7.775 Acer truncatum HOM05D003811 ORTHO05D004470 2.2e-72 276.9 333 57.7
Sed0004951 Sechium edule HOM05D003811 ORTHO05D004470 2.2e-72 276.9 348 54.6
Eucgr.C00112 Eucalyptus grandis HOM05D003811 ORTHO05D004470 2.9e-72 276.6 343 55.4
Prupe.1G074900 Prunus persica HOM05D003811 ORTHO05D004470 4.9e-72 275.8 380 48.7
Migut.J00797 Erythranthe guttata HOM05D003811 ORTHO05D004470 1.9e-71 273.9 355 50.7
TWI34G1601 Tripterygium wilfordii HOM05D003811 ORTHO05D004470 2.4e-71 273.5 325 50.8
Sed0025374 Sechium edule HOM05D003811 ORTHO05D004470 5.4e-71 272.3 344 53.8
Ah.16g102470 Amaranthus hybridus HOM05D003811 ORTHO05D008019 1.6e-70 270.8 415 45.1
MSTRG.10438 Avicennia marina HOM05D003811 ORTHO05D004470 3.3e-68 263.1 358 49.7
Lsat_1_v5_gn_7_56240 Lactuca sativa HOM05D003811 ORTHO05D004470 5.6e-68 262.3 365 51.0
Manes.14G159300 Manihot esculenta HOM05D003811 ORTHO05D004470 2.1e-67 260.4 348 52.3
EL10Ac2g04726 Beta vulgaris HOM05D003811 ORTHO05D004470 6.2e-67 258.8 420 46.9
Ca_27932_v3 Cicer arietinum L. HOM05D003811 ORTHO05D004470 6.2e-67 258.8 359 49.6
Psat4g013600 Pisum sativum HOM05D003811 ORTHO05D004470 1.1e-66 258.1 352 51.4
MBI16_g05834_MAGBIO Magnolia biondii HOM05D003811 ORTHO05D004470 1.4e-66 257.7 343 50.4
Lalb_Chr07g0180651 Lupinus albus HOM05D003811 ORTHO05D004470 3.4e-65 253.1 348 50.3
arahy.Tifrunner.gnm1.ann1.0QJD35 Arachis hypogaea HOM05D003811 ORTHO05D004470 9.9e-65 251.5 374 48.7
Hund16072 Selenicereus undatus HOM05D003811 ORTHO05D004470 1.7e-64 250.8 426 43.4
QL02p046940 Quercus lobata HOM05D003811 ORTHO05D004470 2.2e-64 250.4 369 48.0
HanXRQChr03g0065501 Helianthus annuus HOM05D003811 ORTHO05D004470 6.4e-64 248.8 429 42.0
arahy.Tifrunner.gnm1.ann1.YRC4PH Arachis hypogaea HOM05D003811 ORTHO05D004470 8.4e-64 248.4 361 49.0
HanXRQChr09g0245431 Helianthus annuus HOM05D003811 ORTHO05D004470 1.3e-61 241.1 418 42.6
Lj4g0014027 Lotus japonicus HOM05D003811 ORTHO05D004470 1.8e-61 240.7 369 48.0
VMungo1215G0314 Vigna mungo HOM05D003811 ORTHO05D004470 1.8e-61 240.7 344 49.1
Lalb_Chr13g0299991 Lupinus albus HOM05D003811 ORTHO05D004470 1.1e-60 238.0 349 50.1
Lsat_1_v5_gn_8_69001 Lactuca sativa HOM05D003811 ORTHO05D004470 1.5e-60 237.7 350 49.7
MSTRG.26548 Avicennia marina HOM05D003811 ORTHO05D004470 3.3e-60 236.5 358 46.1
Glyma.17G059100 Glycine max HOM05D003811 ORTHO05D004470 4.3e-60 236.1 354 47.7
Glyma.13G100700 Glycine max HOM05D003811 ORTHO05D004470 5.6e-60 235.7 347 50.1
Medtr4g127420 Medicago truncatula HOM05D003811 ORTHO05D004470 1.3e-59 234.6 360 48.9
AUR62012114 Chenopodium quinoa HOM05D003811 ORTHO05D004470 2.8e-59 233.4 372 46.0
CDE06G2566 Ceratophyllum demersum HOM05D003811 ORTHO05D004470 3.7e-59 233.0 325 48.9
CiPaw.08G032400 Carya illinoinensis HOM05D003811 ORTHO05D004470 1.8e-58 230.7 360 46.7
AUR62040721 Chenopodium quinoa HOM05D003811 ORTHO05D004470 4.0e-58 229.6 375 48.0
TPR.G32975 Trifolium pratense HOM05D003811 ORTHO05D004470 2.0e-57 227.3 360 47.8
Eucgr.C02219 Eucalyptus grandis HOM05D003811 ORTHO05D004470 1.7e-56 224.2 394 45.2
Lalb_Chr12g0199621 Lupinus albus HOM05D003811 ORTHO05D004470 8.4e-56 221.9 349 44.7
COL.COLO4_07099 Corchorus olitorius HOM05D003811 ORTHO05D004470 2.7e-54 216.9 370 45.1
Lsat_1_v5_gn_5_83141 Lactuca sativa HOM05D003811 ORTHO05D004470 4.6e-54 216.1 356 46.9
SalBow5G0957 Salvia bowleyana HOM05D003811 ORTHO05D004470 7.9e-54 215.3 327 45.3
SalBow5G4432 Salvia bowleyana HOM05D003811 ORTHO05D004470 1.0e-53 214.9 327 45.3
ECA240G2391 Erigeron canadensis HOM05D003811 ORTHO05D004470 3.9e-53 213.0 369 42.8
Phvul.003G141200 Phaseolus vulgaris HOM05D003811 ORTHO05D004470 3.9e-53 213.0 351 45.3
HanXRQChr10g0308851 Helianthus annuus HOM05D003811 ORTHO05D004470 9.6e-52 208.4 352 45.5
PGR001G0001 Punica granatum HOM05D003811 ORTHO05D004470 1.1e-50 204.9 363 44.4
Gohir.D05G002600 Gossypium hirsutum HOM05D003811 ORTHO05D004470 4.0e-50 203.0 339 49.9
Gohir.A05G002200 Gossypium hirsutum HOM05D003811 ORTHO05D004470 1.2e-49 201.4 339 49.0
Gorai.009G002400 Gossypium raimondii HOM05D003811 ORTHO05D004470 2.2e-48 197.2 338 49.1
Thhalv10013517m.g Eutrema salsugineum HOM05D003811 ORTHO05D004470 2.9e-48 196.8 391 42.7
Actinidia38496 Actinidia chinensis HOM05D003811 ORTHO05D004470 1.1e-47 194.9 224 55.8
Aa31LG3G13080 Aethionema arabicum HOM05D003811 ORTHO05D004470 5.5e-47 192.6 436 40.6
unitig_8.g4051 Utricularia gibba HOM05D003811 ORTHO05D004470 5.5e-47 192.6 280 48.6
PSO170G1122 Papaver somniferum HOM05D003811 ORTHO05D004470 3.9e-45 186.4 370 41.6
Sp6g18910 Schrenkiella parvula HOM05D003811 ORTHO05D004470 7.4e-44 182.2 383 38.9
PSO063G0992 Papaver somniferum HOM05D003811 ORTHO05D004470 1.3e-43 181.4 373 41.0
unitig_22.g5159 Utricularia gibba HOM05D003811 ORTHO05D004470 2.6e-41 173.7 283 45.9
Thhalv10025322m.g Eutrema salsugineum HOM05D003811 ORTHO05D004470 3.4e-41 173.3 367 37.3
HanXRQChr05g0141071 Helianthus annuus HOM05D003811 ORTHO05D004470 3.4e-41 173.3 334 41.6
SGA_v2.0_scaffold31G12764 Striga asiatica HOM05D003811 ORTHO05D004470 3.8e-40 169.9 361 39.9
CARHR233500 Cardamine hirsuta HOM05D003811 ORTHO05D004470 5.0e-40 169.5 346 38.2
C01p21610 Brassica napus HOM05D003811 ORTHO05D004470 6.5e-40 169.1 365 38.9
BolC1t02080H Brassica oleracea HOM05D003811 ORTHO05D004470 6.5e-40 169.1 365 38.9
AL7G27010 Arabidopsis lyrata HOM05D003811 ORTHO05D004470 1.1e-39 168.3 356 37.6
BolC9t57752H Brassica oleracea HOM05D003811 ORTHO05D004470 1.4e-39 167.9 307 43.6
Sp7g24010 Schrenkiella parvula HOM05D003811 ORTHO05D004470 1.4e-39 167.9 363 40.5
BcaC09g50723 Brassica carinata HOM05D003811 ORTHO05D004470 7.2e-39 165.6 365 38.6
C09p49010 Brassica napus HOM05D003811 ORTHO05D004470 7.2e-39 165.6 311 44.4
BcaC04g19992 Brassica carinata HOM05D003811 ORTHO05D004470 2.1e-38 164.1 311 44.4
HPP92_010287 Vanilla planifolia HOM05D003811 ORTHO05D004470 2.7e-38 163.7 379 40.6
AT4G25990 Arabidopsis thaliana HOM05D003811 ORTHO05D004470 7.9e-38 162.2 356 37.9
BraA02t05937Z Brassica rapa HOM05D003811 ORTHO05D004470 1.0e-37 161.8 341 40.8
BcaB05g22326 Brassica carinata HOM05D003811 ORTHO05D004470 1.1e-36 158.3 362 40.6
BcaC06g32778 Brassica carinata HOM05D003811 ORTHO05D004470 1.5e-36 157.9 360 40.6
A02p08670 Brassica napus HOM05D003811 ORTHO05D004470 1.5e-36 157.9 341 40.5
AT5G57180 Arabidopsis thaliana HOM05D003811 ORTHO05D004470 4.3e-36 156.4 380 36.1
Actinidia29953 Actinidia chinensis HOM05D003811 ORTHO05D004470 6.3e-35 152.5 202 54.0
BcaC03g14176 Brassica carinata HOM05D003811 ORTHO05D004470 6.3e-35 152.5 334 40.7
C02p14510 Brassica napus HOM05D003811 ORTHO05D004470 6.3e-35 152.5 334 40.7
BolC2t07575H Brassica oleracea HOM05D003811 ORTHO05D004470 6.3e-35 152.5 334 40.7
A10p14570 Brassica napus HOM05D003811 ORTHO05D004470 8.2e-35 152.1 310 45.8
Glyma.15G166500 Glycine max HOM05D003811 ORTHO05D004470 3.1e-34 150.2 307 44.0
AL8G33110 Arabidopsis lyrata HOM05D003811 ORTHO05D004470 9.1e-34 148.7 381 38.1
BraA10t43544Z Brassica rapa HOM05D003811 ORTHO05D004470 2.0e-33 147.5 310 45.2
Glyma.09G059800 Glycine max HOM05D003811 ORTHO05D004470 4.5e-33 146.4 339 38.9
BcaB08g36076 Brassica carinata HOM05D003811 ORTHO05D004470 5.9e-33 146.0 356 36.8
FAN05G4809 Fragaria x ananassa HOM05D003811 ORTHO05D004470 5.9e-33 146.0 184 48.4
CARHR270970 Cardamine hirsuta HOM05D003811 ORTHO05D004470 1.3e-32 144.8 383 36.6
HPP92_017127 Vanilla planifolia HOM05D003811 ORTHO05D004470 1.3e-32 144.8 359 38.2
Carub.0007s1496 Capsella rubella HOM05D003811 ORTHO05D004470 1.7e-32 144.4 357 38.9
SGA_v2.0_scaffold511G52626 Striga asiatica HOM05D003811 ORTHO05D004470 1.7e-32 144.4 370 34.9
BraA03t14705Z Brassica rapa HOM05D003811 ORTHO05D004470 3.8e-32 143.3 349 39.0
BraA01t01681Z Brassica rapa HOM05D003811 ORTHO05D004470 1.4e-31 141.4 359 37.9
A01p17250 Brassica napus HOM05D003811 ORTHO05D004470 3.2e-31 140.2 359 39.3
BolC7t45947H Brassica oleracea HOM05D003811 ORTHO05D004470 4.2e-31 139.8 361 38.8
Ca_02108_v3 Cicer arietinum L. HOM05D003811 ORTHO05D004470 4.2e-31 139.8 339 40.7
Medtr2g038010 Medicago truncatula HOM05D003811 ORTHO05D004470 4.2e-31 139.8 356 37.1
BcaNung03775 Brassica carinata HOM05D003811 ORTHO05D004470 5.5e-31 139.4 364 37.9
TPR.G7568 Trifolium pratense HOM05D002228 ORTHO05D002347 1.2e-30 138.3 330 41.8
C07p54590 Brassica napus HOM05D003811 ORTHO05D004470 3.0e-29 133.7 361 37.4
ECA234G4485 Erigeron canadensis HOM05D003811 ORTHO05D004470 3.0e-29 133.7 200 46.5
Psat1g144040 Pisum sativum HOM05D003811 ORTHO05D004470 6.7e-29 132.5 333 38.7
Carub.0008s1769 Capsella rubella HOM05D003811 ORTHO05D004470 1.5e-28 131.3 376 37.8
Oeu064847.1 Olea europaea HOM05D003811 ORTHO05D004470 2.6e-28 130.6 115 67.0
ECA236G3708 Erigeron canadensis HOM05D003811 ORTHO05D004470 6.3e-27 125.9 262 37.4
SGA_v2.0_scaffold112G31580 Striga asiatica HOM05D003811 ORTHO05D004470 6.3e-27 125.9 279 39.1
Phvul.009G236100 Phaseolus vulgaris HOM05D003811 ORTHO05D004470 9.1e-26 122.1 279 34.8
ATR0626G357 Amborella trichopoda HOM05D003811 ORTHO05D004470 1.5e-25 121.3 364 34.1
FAN24G1311 Fragaria x ananassa HOM05D003811 ORTHO05D004470 5.0e-24 116.3 102 55.9
A03p56350 Brassica napus HOM05D003811 ORTHO05D004470 1.9e-23 114.4 347 34.9
FvH4_2g01490 Fragaria vesca HOM05D003811 ORTHO05D004470 1.9e-23 114.4 102 54.9
FAN05G5342 Fragaria x ananassa HOM05D003811 ORTHO05D004470 3.0e-21 107.1 98 64.3
Zm00001eb272980 Zea mays HOM05D018649 ORTHO05D004470 2.0e-20 104.4 364 31.6
Os02g0148000 Oryza sativa ssp. japonica HOM05D003811 ORTHO05D004470 4.4e-20 103.2 285 35.1
Zm00001eb226810 Zea mays HOM05D018649 ORTHO05D004470 9.7e-20 102.1 362 31.8
Os06g0699600 Oryza sativa ssp. japonica HOM05D003811 ORTHO05D004470 2.2e-16 90.9 360 30.3
Zm00001eb208040 Zea mays HOM05D003811 ORTHO05D004470 1.1e-15 88.6 413 29.1
Lsat_1_v5_gn_6_95500 Lactuca sativa HOM05D003811 ORTHO05D004470 4.4e-12 76.6 157 39.5
Lsat_1_v5_gn_5_27801 Lactuca sativa HOM05D003811 ORTHO05D036460 1.7e-11 74.7 81 45.7
Lsat_1_v5_gn_5_45681 Lactuca sativa HOM05D003811 ORTHO05D036460 4.5e-09 66.6 100 41.0
Lsat_1_v5_gn_9_75161 Lactuca sativa HOM05D003811 ORTHO05D036460 2.7e-06 57.4 98 37.8
SEGI_33443 Sequoiadendron giganteum HOM05D001106 ORTHO05D000910 8.0e-06 55.8 355 26.2


User provided reference genes

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