Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000052 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 7.6e-79 297.0 138 100.0
CSS0026660 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 7.9e-68 260.4 150 86.0
Thecc.04G221700 Theobroma cacao HOM05D007677 ORTHO05D009728 3.5e-55 218.4 149 71.1
Nn1g02165 Nelumbo nucifera HOM05D007677 ORTHO05D009728 7.7e-55 217.2 149 70.5
COL.COLO4_21648 Corchorus olitorius HOM05D007677 ORTHO05D009728 1.7e-54 216.1 152 68.4
Oeu037682.1 Olea europaea HOM05D007677 ORTHO05D009728 6.5e-54 214.2 151 70.9
Cc03_g03130 Coffea canephora HOM05D007677 ORTHO05D009728 1.1e-53 213.4 150 70.0
Gohir.A02G031000 Gossypium hirsutum HOM05D007677 ORTHO05D009728 3.2e-53 211.8 150 68.0
MD13G1183200 Malus domestica HOM05D007677 ORTHO05D009728 3.2e-53 211.8 152 69.7
Duzib212G0325 Durio zibethinus HOM05D001530 ORTHO05D003676 5.5e-53 211.1 149 68.5
CSS0045125 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 1.2e-52 209.9 159 67.3
DCAR_030598 Daucus carota HOM05D007677 ORTHO05D009728 3.6e-52 208.4 149 67.8
Ciclev10006064m.g Citrus clementina HOM05D007677 ORTHO05D009728 4.7e-52 208.0 147 68.7
Eucgr.H03598 Eucalyptus grandis HOM05D007677 ORTHO05D009728 1.0e-51 206.8 151 68.9
Gohir.D02G037900 Gossypium hirsutum HOM05D007677 ORTHO05D009728 1.0e-51 206.8 150 66.7
Gorai.005G041800 Gossypium raimondii HOM05D007677 ORTHO05D009728 1.0e-51 206.8 150 66.7
Manes.03G184600 Manihot esculenta HOM05D007677 ORTHO05D009728 3.9e-51 204.9 150 68.7
FvH4_4g14500 Fragaria vesca HOM05D007677 ORTHO05D009728 5.2e-51 204.5 148 69.6
FAN12G4178 Fragaria x ananassa HOM05D007677 ORTHO05D009728 5.2e-51 204.5 148 69.6
CiPaw.01G160100 Carya illinoinensis HOM05D007677 ORTHO05D009728 1.5e-50 203.0 144 68.1
CANSAT78G2143 Cannabis sativa HOM05D007677 ORTHO05D009728 2.6e-50 202.2 149 69.1
Peaxi162Scf00196g00106 Petunia axillaris HOM05D007677 ORTHO05D009728 3.3e-50 201.8 147 68.7
RcHm_v2.0_Chr4g0418331 Rosa chinensis HOM05D007677 ORTHO05D009728 3.3e-50 201.8 145 70.3
SGA_v2.0_scaffold237G43825 Striga asiatica HOM05D007677 ORTHO05D009728 3.3e-50 201.8 156 63.5
Lj6P565T22 Lonicera japonica HOM05D007677 ORTHO05D009728 5.7e-50 201.1 140 70.7
Prupe.1G151500 Prunus persica HOM05D007677 ORTHO05D009728 5.7e-50 201.1 151 67.5
Aqoxy2G03269 Aquilegia oxysepala HOM05D007677 ORTHO05D009728 7.4e-50 200.7 139 69.8
FAN07G0089 Fragaria x ananassa HOM05D007677 ORTHO05D009728 7.4e-50 200.7 148 68.2
MD16G1184100 Malus domestica HOM05D007677 ORTHO05D009728 9.7e-50 200.3 152 66.4
Phvul.003G092600 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 9.7e-50 200.3 149 67.8
TWI09G0567 Tripterygium wilfordii HOM05D007677 ORTHO05D009728 1.3e-49 199.9 146 66.4
QL06p004212 Quercus lobata HOM05D007677 ORTHO05D009728 2.2e-49 199.1 148 65.5
CsaV3_3G013730 Cucumis sativus L. HOM05D007677 ORTHO05D009728 4.8e-49 198.0 143 66.4
ClCG05G005440 Citrullus lanatus HOM05D007677 ORTHO05D009728 8.2e-49 197.2 142 66.2
MELO3C006567.2 Cucumis melo HOM05D007677 ORTHO05D009728 8.2e-49 197.2 143 65.7
Glyma.17G017000 Glycine max HOM05D007677 ORTHO05D009728 1.1e-48 196.8 149 67.1
VMungo1215G2604 Vigna mungo HOM05D007677 ORTHO05D009728 1.1e-48 196.8 149 66.4
Sabra10G0011000 Salix brachista HOM05D001530 ORTHO05D004168 1.4e-48 196.4 145 66.9
vmacro08279 Vaccinium macrocarpon HOM05D007677 ORTHO05D009728 3.1e-48 195.3 157 63.7
CiPaw.02G092500 Carya illinoinensis HOM05D007677 ORTHO05D009728 9.1e-48 193.7 144 68.1
Glyma.13G208700 Glycine max HOM05D007677 ORTHO05D009728 1.2e-47 193.4 146 65.8
Phvul.006G153800 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 1.6e-47 193.0 149 65.1
Sopen01g031880 Solanum pennellii HOM05D007677 ORTHO05D009728 1.6e-47 193.0 143 68.5
PGR004G0596 Punica granatum HOM05D007677 ORTHO05D009728 2.0e-47 192.6 148 64.2
Solyc01g080100.3 Solanum lycopersicum HOM05D007677 ORTHO05D009728 2.0e-47 192.6 143 67.8
Sed0011127 Sechium edule HOM05D007677 ORTHO05D009728 2.6e-47 192.2 143 65.0
Glyma.15G104100 Glycine max HOM05D007677 ORTHO05D009728 3.5e-47 191.8 146 65.8
Medtr4g117270 Medicago truncatula HOM05D007677 ORTHO05D009728 4.5e-47 191.4 148 64.9
PGSC0003DMG400033121 Solanum tuberosum HOM05D007677 ORTHO05D009728 5.9e-47 191.0 144 66.7
PSO407G0046 Papaver somniferum HOM05D007677 ORTHO05D009728 7.7e-47 190.7 141 68.1
TPR.G20115 Trifolium pratense HOM05D007677 ORTHO05D009728 7.7e-47 190.7 148 64.2
TAR633G1088 Trochodendron aralioides HOM05D007677 ORTHO05D009728 7.7e-47 190.7 156 61.5
Lalb_Chr18g0056081 Lupinus albus HOM05D007677 ORTHO05D009728 1.0e-46 190.3 141 66.7
arahy.Tifrunner.gnm1.ann1.PDVV0K Arachis hypogaea HOM05D007677 ORTHO05D009728 1.3e-46 189.9 144 66.0
arahy.Tifrunner.gnm1.ann1.UI8DPT Arachis hypogaea HOM05D007677 ORTHO05D009728 1.3e-46 189.9 144 66.0
PSO170G6325 Papaver somniferum HOM05D007677 ORTHO05D009728 1.7e-46 189.5 141 67.4
Lj4g0019321 Lotus japonicus HOM05D007677 ORTHO05D009728 2.2e-46 189.1 153 63.4
Lj6g0003442 Lotus japonicus HOM05D007677 ORTHO05D009728 2.2e-46 189.1 152 63.8
Cfa015583 Carpinus fangiana HOM05D007677 ORTHO05D009728 2.9e-46 188.7 149 64.4
Ca_21594_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 6.5e-46 187.6 147 61.9
Migut.G00291 Erythranthe guttata HOM05D007677 ORTHO05D009728 6.5e-46 187.6 142 65.5
Ca_00644_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 8.5e-46 187.2 149 63.8
Haze_00962 Corylus avellana HOM05D007677 ORTHO05D009728 1.5e-45 186.4 149 63.8
Medtr2g022190 Medicago truncatula HOM05D007677 ORTHO05D009728 7.2e-45 184.1 149 63.8
Psat4g031560 Pisum sativum HOM05D007677 ORTHO05D009728 1.6e-44 183.0 147 62.6
TPR.G30685 Trifolium pratense HOM05D007677 ORTHO05D009728 2.1e-44 182.6 149 61.7
VMungo0540G0472 Vigna mungo HOM05D007677 ORTHO05D009728 4.7e-44 181.4 146 62.3
Nitab4.5_0001247g0090 Nicotiana tabacum HOM05D007677 ORTHO05D009728 6.1e-44 181.0 147 64.6
Glyma.07G257100 Glycine max HOM05D007677 ORTHO05D009728 6.8e-43 177.6 149 62.4
AUR62030087 Chenopodium quinoa HOM05D007677 ORTHO05D007693 4.8e-41 171.4 135 65.2
Dinv38394 Davidia involucrata HOM05D007677 ORTHO05D009728 2.4e-40 169.1 135 65.2
Psat1g183560 Pisum sativum HOM05D007677 ORTHO05D009728 1.2e-39 166.8 149 58.4
Sc13g0003990 Simmondsia chinensis HOM05D007677 ORTHO05D009728 1.6e-39 166.4 148 57.4
THA.LOC104820106 Tarenaya hassleriana HOM05D001407 ORTHO05D001314 1.9e-37 159.5 144 56.9
TAR362G0152 Trochodendron aralioides HOM05D007677 ORTHO05D009728 3.7e-33 145.2 105 63.8
Aa31LG5G16660 Aethionema arabicum HOM05D007677 ORTHO05D009728 2.0e-31 139.4 146 51.4
AL3G17000 Arabidopsis lyrata HOM05D007677 ORTHO05D009728 4.5e-31 138.3 139 50.4
BcaC05g30051 Brassica carinata HOM05D007677 ORTHO05D009728 4.5e-31 138.3 139 48.9
Sp3g05100 Schrenkiella parvula HOM05D007677 ORTHO05D009728 4.5e-31 138.3 139 49.6
A05p41840 Brassica napus HOM05D007677 ORTHO05D009728 5.9e-31 137.9 139 48.9
BraA05t22903Z Brassica rapa HOM05D007677 ORTHO05D009728 5.9e-31 137.9 139 48.9
BcaNung06667 Brassica carinata HOM05D007677 ORTHO05D009728 2.3e-30 136.0 144 49.3
C05p61090 Brassica napus HOM05D007677 ORTHO05D009728 2.3e-30 136.0 139 49.6
BolC5t34766H Brassica oleracea HOM05D007677 ORTHO05D009728 2.3e-30 136.0 139 49.6
AT3G06145 Arabidopsis thaliana HOM05D007677 ORTHO05D009728 3.8e-30 135.2 136 49.3
Carub.0003s0558 Capsella rubella HOM05D007677 ORTHO05D009728 5.0e-30 134.8 139 48.9
CARHR080660 Cardamine hirsuta HOM05D007677 ORTHO05D009728 6.6e-30 134.4 139 49.6
Thhalv10021653m.g Eutrema salsugineum HOM05D007677 ORTHO05D009728 3.3e-29 132.1 139 48.9
ATR0626G325 Amborella trichopoda HOM05D007677 ORTHO05D009728 8.0e-28 127.5 118 55.9
SHI00378 Sapria himalayana HOM05D007677 ORTHO05D009728 2.0e-26 122.9 143 44.8
SEGI_19260 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 6.3e-25 117.9 120 51.7
Lsat_1_v5_gn_7_41320 Lactuca sativa HOM05D007677 ORTHO05D009728 4.1e-24 115.2 68 77.9
EL10Ac3g06358 Beta vulgaris HOM05D007677 ORTHO05D009728 9.8e-18 94.0 66 66.7
Atru.chr4.2568 Acer truncatum HOM05D007677 ORTHO05D009728 1.7e-17 93.2 70 67.1
MBI17_g34455_MAGBIO Magnolia biondii HOM05D002055 ORTHO05D002120 5.4e-16 88.2 57 68.4
Potri.010G030701 Populus trichocarpa HOM05D007677 ORTHO05D009728 1.5e-13 80.1 63 63.5
SEGI_22306 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 5.6e-13 78.2 106 37.7
SEGI_22697 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 6.2e-12 74.7 106 37.7


User provided reference genes

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