Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 7.1e-229 797.0 417 100.0
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 2.3e-187 659.1 422 81.3
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 7.0e-184 647.5 425 80.0
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.2e-182 642.5 422 79.6
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 5.5e-181 637.9 422 79.1
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 6.5e-166 587.8 420 74.0
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 3.2e-165 585.5 338 86.1
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 2.3e-163 579.3 427 71.2
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 4.4e-162 575.1 423 73.8
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.3e-161 573.5 417 71.2
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.3e-161 573.5 422 72.3
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.3e-161 573.5 427 71.4
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 3.7e-161 572.0 420 72.1
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 8.3e-161 570.9 420 71.4
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.2e-159 567.0 419 70.6
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.7e-158 563.1 421 71.0
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 2.9e-158 562.4 349 82.2
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 3.8e-158 562.0 421 70.8
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 3.8e-158 562.0 423 70.9
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 5.0e-158 561.6 419 70.4
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 8.6e-158 560.8 423 71.2
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 8.6e-158 560.8 423 71.2
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.5e-157 560.1 426 70.4
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.9e-157 559.7 421 69.8
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.9e-157 559.7 421 71.0
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.5e-157 559.3 422 70.4
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 4.3e-157 558.5 419 69.0
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 4.3e-157 558.5 421 69.6
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.3e-157 558.5 422 70.1
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 5.6e-157 558.1 346 79.2
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 6.1e-156 554.7 423 69.5
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 5.2e-155 551.6 421 68.9
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 8.9e-155 550.8 416 69.7
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 1.2e-154 550.4 420 70.2
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 7.5e-154 547.7 422 69.0
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 1.3e-153 547.0 353 78.2
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 1.7e-153 546.6 419 70.2
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 1.1e-152 543.9 434 68.9
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 1.1e-152 543.9 434 68.9
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 5.4e-152 541.6 320 84.7
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 9.2e-152 540.8 423 70.2
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 1.2e-151 540.4 421 67.7
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.6e-151 540.0 352 76.1
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 2.3e-150 536.2 420 68.6
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 3.0e-150 535.8 424 67.2
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 3.9e-150 535.4 353 77.3
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 5.0e-150 535.0 354 76.8
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.5e-149 533.5 318 83.0
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 1.5e-149 533.5 421 67.5
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.2e-148 530.4 416 68.3
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.2e-148 530.4 415 68.2
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 3.6e-148 528.9 350 76.6
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 1.0e-147 527.3 423 67.4
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.0e-147 527.3 415 68.0
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.0e-147 527.3 340 79.4
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 2.3e-147 526.2 339 79.9
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 6.8e-147 524.6 360 73.1
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.6e-146 522.7 426 66.4
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 7.5e-146 521.2 320 83.1
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 1.3e-145 520.4 420 64.5
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 3.7e-145 518.8 432 66.2
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 8.3e-145 517.7 429 64.8
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.6e-143 513.5 425 65.2
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 3.5e-143 512.3 369 69.9
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 2.3e-142 509.6 341 74.5
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 3.0e-142 509.2 351 75.2
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 2.5e-141 506.1 353 73.7
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 2.8e-140 502.7 410 66.6
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.4e-139 500.4 366 71.3
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 5.2e-139 498.4 425 63.5
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 3.4e-138 495.7 446 61.4
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 4.9e-137 491.9 417 63.8
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 6.4e-137 491.5 366 69.9
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 1.1e-136 490.7 421 63.7
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 5.4e-136 488.4 416 63.7
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 3.0e-134 482.6 425 62.4
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 9.5e-133 477.6 426 60.3
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 2.8e-132 476.1 425 60.2
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 4.0e-131 472.2 415 61.9
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 5.2e-131 471.9 422 61.4
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 2.0e-130 469.9 421 61.8
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 5.8e-130 468.4 351 69.8
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 2.2e-129 466.5 346 69.9
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 2.2e-129 466.5 353 68.8
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 8.4e-129 464.5 410 61.0
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 8.4e-129 464.5 349 69.9
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.1e-128 464.2 410 61.0
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 3.2e-128 462.6 355 68.5
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 5.4e-128 461.8 351 68.9
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 2.1e-127 459.9 409 60.9
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 7.8e-127 458.0 425 60.7
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 7.8e-127 458.0 425 60.7
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.1e-124 449.9 297 73.7
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 3.6e-124 449.1 438 59.8
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 1.4e-123 447.2 410 60.7
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 2.6e-122 443.0 285 79.3
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 2.1e-119 433.3 340 68.2
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 4.6e-119 432.2 370 62.4
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.3e-118 430.6 436 57.6
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 1.4e-115 420.6 279 76.3
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 6.9e-115 418.3 417 56.6
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.2e-114 417.5 273 75.8
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.9e-112 410.2 352 59.1
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 2.4e-112 409.8 350 61.1
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 4.2e-112 409.1 350 64.0
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.3e-110 404.1 527 49.0
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 5.6e-109 398.7 425 57.2
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 7.1e-104 381.7 357 55.2
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 5.1e-102 375.6 338 58.9
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.3e-101 372.9 294 67.0
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 2.0e-98 363.6 334 55.1
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 4.9e-97 359.0 360 56.1
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 4.8e-92 342.4 291 65.3
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.1e-91 341.3 403 51.6
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 6.5e-89 332.0 344 49.4
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.4e-83 314.3 342 51.2
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 1.2e-79 301.2 242 70.2
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 2.1e-79 300.4 400 46.8
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 6.7e-70 268.9 324 46.9
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 1.1e-67 261.5 323 45.2
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 1.3e-65 254.6 359 42.1
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 7.2e-56 222.2 154 70.8
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.8e-46 191.0 158 61.4
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 2.4e-43 180.6 234 49.6
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 7.0e-43 179.1 110 80.9
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.0e-41 175.3 258 43.0
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 1.4e-38 164.9 115 71.3
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 1.5e-37 161.4 119 69.7
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-35 154.8 111 72.1
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.4e-35 152.9 99 76.8
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 7.0e-35 152.5 111 73.0
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 3.3e-32 143.7 154 50.6
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 5.8e-29 132.9 100 64.0
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.9e-28 130.6 166 45.2
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 4.9e-28 129.8 166 45.2
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 3.2e-27 127.1 73 83.6
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.5e-26 123.6 149 47.0
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 3.5e-26 123.6 79 77.2
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 7.8e-26 122.5 167 46.7
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 1.7e-25 121.3 162 48.1
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 3.0e-25 120.6 146 51.4
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.9e-24 117.9 156 46.8
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 8.1e-23 112.5 88 60.2
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 3.2e-19 100.5 80 68.8
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 1.0e-17 95.5 147 45.6
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 1.9e-16 91.3 120 40.8
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 4.0e-14 83.6 113 42.5
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 4.0e-14 83.6 113 42.5
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.2e-13 82.0 88 52.3
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 2.0e-13 81.3 111 45.9
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 4.1e-11 73.6 126 33.3
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.0e-09 68.9 41 78.0
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 2.5e-08 64.3 45 68.9
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 2.5e-08 64.3 45 68.9
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 2.5e-08 64.3 45 68.9
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 2.1e-07 61.2 43 74.4
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 8.1e-07 59.3 64 46.9
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 6.9e-06 56.2 54 46.3


User provided reference genes

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