Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000041 Camellia sinensis var. sinensis HOM05D007850 ORTHO05D009594 3.9e-38 161.0 82 100.0
Actinidia17514 Actinidia chinensis HOM05D007850 ORTHO05D009594 2.3e-22 108.6 80 75.0
Rhsim05G0038300 Rhododendron simsii HOM05D007850 ORTHO05D009594 1.0e-17 93.2 85 69.4
Potri.015G106700 Populus trichocarpa HOM05D007850 ORTHO05D009594 8.4e-17 90.1 76 63.2
Thecc.09G099000 Theobroma cacao HOM05D007850 ORTHO05D009594 8.4e-17 90.1 80 63.8
Gohir.D08G264200 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.4e-16 89.4 81 67.9
Gorai.004G282100 Gossypium raimondii HOM05D007850 ORTHO05D009594 1.4e-16 89.4 81 67.9
Hma1.2p1_0208F.1_g088080 Hydrangea macrophylla HOM05D007850 ORTHO05D009594 1.4e-16 89.4 79 65.8
Gohir.A07G009000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 4.2e-16 87.8 80 63.8
Gohir.D07G009300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 4.2e-16 87.8 80 63.8
Gorai.001G009500 Gossypium raimondii HOM05D007850 ORTHO05D009594 4.2e-16 87.8 80 63.8
Peaxi162Scf00944g00009 Petunia axillaris HOM05D007850 ORTHO05D009594 4.2e-16 87.8 79 64.6
ClCG03G016060 Citrullus lanatus HOM05D007850 ORTHO05D009594 1.6e-15 85.9 72 65.3
Nitab4.5_0003079g0010 Nicotiana tabacum HOM05D007850 ORTHO05D009594 1.6e-15 85.9 83 63.9
Cpa.g.sc78.26 Carica papaya HOM05D007850 ORTHO05D009594 2.7e-15 85.1 76 61.8
Eucgr.K01055 Eucalyptus grandis HOM05D007850 ORTHO05D009594 2.7e-15 85.1 77 62.3
Manes.03G028100 Manihot esculenta HOM05D007850 ORTHO05D009594 2.7e-15 85.1 76 64.5
Nn8g39046 Nelumbo nucifera HOM05D007850 ORTHO05D009594 3.5e-15 84.7 72 63.9
Nitab4.5_0000566g0200 Nicotiana tabacum HOM05D007850 ORTHO05D009594 4.6e-15 84.3 83 60.2
Sabra12G0079700 Salix brachista HOM05D007850 ORTHO05D009594 4.6e-15 84.3 58 69.0
CANSAT56G2953 Cannabis sativa HOM05D007850 ORTHO05D009594 6.0e-15 84.0 79 59.5
Gohir.A08G243300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 6.0e-15 84.0 81 64.2
Prupe.7G218200 Prunus persica HOM05D007850 ORTHO05D009594 6.0e-15 84.0 83 59.0
Duzib168G0149 Durio zibethinus HOM05D007850 ORTHO05D009594 7.9e-15 83.6 80 61.2
Solyc12g008560.1 Solanum lycopersicum HOM05D007850 ORTHO05D009594 1.0e-14 83.2 80 57.5
Gohir.A06G068000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.3e-14 82.8 75 62.7
Cfa003164 Carpinus fangiana HOM05D007850 ORTHO05D009594 2.3e-14 82.0 70 62.9
Haze_25835 Corylus avellana HOM05D007850 ORTHO05D009594 2.3e-14 82.0 76 63.2
Gohir.D06G066600 Gossypium hirsutum HOM05D007850 ORTHO05D009594 2.3e-14 82.0 75 61.3
Gorai.010G078100 Gossypium raimondii HOM05D007850 ORTHO05D009594 2.3e-14 82.0 75 61.3
PGSC0003DMG400000292 Solanum tuberosum HOM05D007850 ORTHO05D009594 2.3e-14 82.0 80 56.2
Ciclev10010071m.g Citrus clementina HOM05D007850 ORTHO05D009594 6.7e-14 80.5 76 57.9
DCAR_012035 Daucus carota HOM05D007850 ORTHO05D009594 6.7e-14 80.5 77 59.7
QL08p048105 Quercus lobata HOM05D007850 ORTHO05D009594 8.7e-14 80.1 70 60.0
CAN.G1591.18 Capsicum annuum HOM05D007850 ORTHO05D009594 1.5e-13 79.3 77 61.0
CAN.G2021.4 Capsicum annuum HOM05D007850 ORTHO05D009594 1.5e-13 79.3 77 61.0
Ciclev10006350m.g Citrus clementina HOM05D007850 ORTHO05D009594 1.5e-13 79.3 76 57.9
DCAR_000091 Daucus carota HOM05D007850 ORTHO05D009594 1.9e-13 79.0 77 58.4
DCAR_012032 Daucus carota HOM05D007850 ORTHO05D009594 1.9e-13 79.0 77 58.4
SalBow6G1226 Salvia bowleyana HOM05D007850 ORTHO05D009594 1.9e-13 79.0 80 55.0
RcHm_v2.0_Chr2g0092131 Rosa chinensis HOM05D007850 ORTHO05D009594 2.5e-13 78.6 75 64.0
Cc06_g10600 Coffea canephora HOM05D007850 ORTHO05D009594 3.3e-13 78.2 77 55.8
Phvul.004G174800 Phaseolus vulgaris HOM05D007850 ORTHO05D009594 3.3e-13 78.2 82 57.3
MELO3C015421.2 Cucumis melo HOM05D007850 ORTHO05D009594 7.4e-13 77.0 75 57.3
CAN.G1677.12 Capsicum annuum HOM05D007850 ORTHO05D009594 9.6e-13 76.6 77 59.7
CAN.G1357.32 Capsicum annuum HOM05D007850 ORTHO05D009594 2.1e-12 75.5 77 59.7
FAN23G2338 Fragaria x ananassa HOM05D007850 ORTHO05D009594 2.8e-12 75.1 75 62.7
FAN26G0602 Fragaria x ananassa HOM05D007850 ORTHO05D009594 2.8e-12 75.1 75 62.7
FAN26G2005 Fragaria x ananassa HOM05D007850 ORTHO05D009594 2.8e-12 75.1 75 62.7
QL03p050300 Quercus lobata HOM05D007850 ORTHO05D009594 2.8e-12 75.1 70 58.6
FAN28G1089 Fragaria x ananassa HOM05D007850 ORTHO05D009594 3.7e-12 74.7 75 62.7
CAN.G1349.15 Capsicum annuum HOM05D007850 ORTHO05D009594 6.2e-12 73.9 77 58.4
FvH4_1g06390 Fragaria vesca HOM05D007850 ORTHO05D009594 6.2e-12 73.9 75 61.3
FAN19G1200 Fragaria x ananassa HOM05D007850 ORTHO05D009594 6.2e-12 73.9 75 61.3
TAR624G0098 Trochodendron aralioides HOM05D007850 ORTHO05D009594 1.4e-11 72.8 76 52.6
arahy.Tifrunner.gnm1.ann1.X02Y3Q Arachis hypogaea HOM05D007850 ORTHO05D009594 1.8e-11 72.4 77 57.1
CAN.G1084.1 Capsicum annuum HOM05D007850 ORTHO05D009594 1.8e-11 72.4 77 58.4
Lalb_Chr22g0352511 Lupinus albus HOM05D007850 ORTHO05D009594 3.1e-11 71.6 74 62.2
Psat1g048160 Pisum sativum HOM05D007850 ORTHO05D009594 5.3e-11 70.9 71 56.3
Ca_25585_v3 Cicer arietinum L. HOM05D007850 ORTHO05D009594 6.9e-11 70.5 79 54.4
Glyma.01G006200 Glycine max HOM05D007850 ORTHO05D009594 6.9e-11 70.5 77 55.8
Glyma.07G125500 Glycine max HOM05D007850 ORTHO05D009594 6.9e-11 70.5 76 55.3
arahy.Tifrunner.gnm1.ann1.X1KXE8 Arachis hypogaea HOM05D012186 ORTHO05D009594 2.6e-10 68.6 82 52.4
Sed0003200 Sechium edule HOM05D007850 ORTHO05D009594 2.6e-10 68.6 74 55.4
CsaV3_1G039900 Cucumis sativus L. HOM05D007850 ORTHO05D009594 5.8e-10 67.4 51 68.6
COL.COLO4_34726 Corchorus olitorius HOM05D007850 ORTHO05D009594 1.0e-09 66.6 56 67.9
Lj2g0008653 Lotus japonicus HOM05D007850 ORTHO05D009594 1.3e-09 66.2 79 54.4
EL10Ac8g18368 Beta vulgaris HOM05D007850 ORTHO05D009594 1.7e-09 65.9 77 51.9
Sopen12g003500 Solanum pennellii HOM05D007850 ORTHO05D009594 2.2e-09 65.5 69 58.0
Sc18g0001560 Simmondsia chinensis HOM05D007850 ORTHO05D009594 2.9e-09 65.1 55 61.8
CDE06G1893 Ceratophyllum demersum HOM05D007850 ORTHO05D009594 3.8e-09 64.7 54 63.0
Medtr6g090490 Medicago truncatula HOM05D007850 ORTHO05D009594 3.8e-09 64.7 80 48.8
Actinidia21359 Actinidia chinensis HOM05D007850 ORTHO05D009594 6.5e-09 63.9 89 48.3
TPR.G33528 Trifolium pratense HOM05D007850 ORTHO05D009594 1.4e-08 62.8 79 49.4
unitig_8.g4473 Utricularia gibba HOM05D007850 ORTHO05D009594 2.5e-08 62.0 70 51.4
AUR62010878 Chenopodium quinoa HOM05D007850 ORTHO05D009594 1.2e-07 59.7 71 53.5
AUR62021391 Chenopodium quinoa HOM05D007850 ORTHO05D009594 1.2e-07 59.7 74 51.4
Aqoxy7G01385 Aquilegia oxysepala HOM05D007850 ORTHO05D009594 2.1e-07 58.9 75 45.3
Lsat_1_v5_gn_7_39541 Lactuca sativa HOM05D007850 ORTHO05D009594 6.1e-07 57.4 63 61.9
Ah.09g230500 Amaranthus hybridus HOM05D007850 ORTHO05D009594 3.0e-06 55.1 71 47.9


User provided reference genes

Program Settings