Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000037 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D020257 5.1e-31 137.5 91 100.0
Thecc.10G184000 Theobroma cacao HOM05D003369 ORTHO05D004089 8.2e-21 103.6 86 84.9
Actinidia13643 Actinidia chinensis HOM05D003369 ORTHO05D004089 5.3e-20 100.9 91 80.2
Duzib114G1008 Durio zibethinus HOM05D003369 ORTHO05D004089 1.3e-18 96.3 87 81.6
Actinidia31631 Actinidia chinensis HOM05D003369 ORTHO05D004089 6.5e-18 94.0 86 82.6
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 6.5e-18 94.0 87 80.5
Aqoxy3G00685 Aquilegia oxysepala HOM05D003369 ORTHO05D004089 3.2e-17 91.7 86 77.9
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 9.3e-17 90.1 87 77.0
ClCG11G010900 Citrullus lanatus HOM05D003369 ORTHO05D004089 1.2e-16 89.7 79 83.5
Duzib106G0164 Durio zibethinus HOM05D003369 ORTHO05D004089 1.2e-16 89.7 86 77.9
Prupe.1G349800 Prunus persica HOM05D003369 ORTHO05D004089 1.6e-16 89.4 86 76.7
CsaV3_3G030590 Cucumis sativus L. HOM05D003369 ORTHO05D004089 2.1e-16 89.0 79 84.8
vmacro06898 Vaccinium macrocarpon HOM05D003369 ORTHO05D004089 2.1e-16 89.0 87 75.9
ECA232G1960 Erigeron canadensis HOM05D003369 ORTHO05D004089 2.7e-16 88.6 91 64.8
COL.COLO4_19461 Corchorus olitorius HOM05D003369 ORTHO05D004089 4.6e-16 87.8 86 76.7
MELO3C022652.2 Cucumis melo HOM05D003369 ORTHO05D004089 7.9e-16 87.0 91 72.5
RcHm_v2.0_Chr4g0447001 Rosa chinensis HOM05D003369 ORTHO05D004089 1.8e-15 85.9 87 72.4
HanXRQChr14g0460671 Helianthus annuus HOM05D003369 ORTHO05D004089 2.3e-15 85.5 83 75.9
CANSAT54G1399 Cannabis sativa HOM05D003369 ORTHO05D004089 5.1e-15 84.3 83 78.3
Atru.chr12.204 Acer truncatum HOM05D003369 ORTHO05D004089 6.7e-15 84.0 83 77.1
A03p22890 Brassica napus HOM05D003369 ORTHO05D004089 8.8e-15 83.6 77 83.1
BraA03t11513Z Brassica rapa HOM05D003369 ORTHO05D004089 8.8e-15 83.6 77 83.1
ECA238G1180 Erigeron canadensis HOM05D003369 ORTHO05D004089 8.8e-15 83.6 83 75.9
Nn5g26838 Nelumbo nucifera HOM05D003369 ORTHO05D004089 8.8e-15 83.6 92 72.8
Carub.0004s2301 Capsella rubella HOM05D003369 ORTHO05D004089 1.5e-14 82.8 77 80.5
Sed0008109 Sechium edule HOM05D003369 ORTHO05D004089 1.5e-14 82.8 80 73.8
BcaB01g03521 Brassica carinata HOM05D003369 ORTHO05D004089 1.9e-14 82.4 77 81.8
Thhalv10016269m.g Eutrema salsugineum HOM05D003369 ORTHO05D004089 1.9e-14 82.4 77 81.8
FvH4_4g37220 Fragaria vesca HOM05D003369 ORTHO05D004089 1.9e-14 82.4 87 75.9
FAN12G0023 Fragaria x ananassa HOM05D003369 ORTHO05D020257 1.9e-14 82.4 87 75.9
FAN17G2799 Fragaria x ananassa HOM05D003369 ORTHO05D004089 1.9e-14 82.4 87 75.9
Gohir.A06G179800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 1.9e-14 82.4 81 75.3
Gorai.010G219100 Gossypium raimondii HOM05D003369 ORTHO05D004089 1.9e-14 82.4 81 75.3
Lalb_Chr06g0168441 Lupinus albus HOM05D003369 ORTHO05D004089 2.5e-14 82.0 91 67.0
Manes.07G142600 Manihot esculenta HOM05D003369 ORTHO05D004089 4.3e-14 81.3 81 79.0
Hund05383 Selenicereus undatus HOM05D003369 ORTHO05D004089 4.3e-14 81.3 86 74.4
TWI09G0152 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 4.3e-14 81.3 87 66.7
Ciclev10030740m.g Citrus clementina HOM05D003369 ORTHO05D004089 5.7e-14 80.9 81 74.1
BcaC01g05384 Brassica carinata HOM05D003369 ORTHO05D004089 7.4e-14 80.5 77 80.5
C03p27140 Brassica napus HOM05D003369 ORTHO05D004089 7.4e-14 80.5 77 80.5
BolC3t15095H Brassica oleracea HOM05D003369 ORTHO05D004089 7.4e-14 80.5 77 80.5
TPR.G35277 Trifolium pratense HOM05D003369 ORTHO05D004089 9.7e-14 80.1 82 76.8
AL4G38590 Arabidopsis lyrata HOM05D003369 ORTHO05D004089 1.3e-13 79.7 77 80.5
CARHR135820 Cardamine hirsuta HOM05D003369 ORTHO05D004089 2.2e-13 79.0 77 80.5
Lj5g0006652 Lotus japonicus HOM05D003369 ORTHO05D004089 2.2e-13 79.0 91 65.9
Manes.10G002000 Manihot esculenta HOM05D003369 ORTHO05D004089 2.2e-13 79.0 85 74.1
AT2G40730 Arabidopsis thaliana HOM05D003369 ORTHO05D004089 3.7e-13 78.2 77 79.2
BcaB06g29170 Brassica carinata HOM05D003369 ORTHO05D004089 3.7e-13 78.2 77 79.2
BcaC02g07330 Brassica carinata HOM05D003369 ORTHO05D004089 3.7e-13 78.2 77 79.2
C04p68490 Brassica napus HOM05D003369 ORTHO05D004089 3.7e-13 78.2 77 79.2
MD13G1002600 Malus domestica HOM05D003369 ORTHO05D004089 6.3e-13 77.4 87 72.4
THA.LOC104824367 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 6.3e-13 77.4 82 70.7
TWI53G1724 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 6.3e-13 77.4 88 59.1
BcaC02g12730 Brassica carinata HOM05D003369 ORTHO05D004089 8.2e-13 77.0 77 77.9
Glyma.09G252000 Glycine max HOM05D003369 ORTHO05D004089 8.2e-13 77.0 82 69.5
TAR633G0919 Trochodendron aralioides HOM05D003369 ORTHO05D004089 8.2e-13 77.0 83 67.5
BolC4t28349H Brassica oleracea HOM05D003369 ORTHO05D004089 1.1e-12 76.6 77 77.9
Glyma.20G219600 Glycine max HOM05D003369 ORTHO05D004089 1.1e-12 76.6 86 68.6
A04p31100 Brassica napus HOM05D003369 ORTHO05D004089 1.4e-12 76.3 77 75.3
BraA04t18565Z Brassica rapa HOM05D003369 ORTHO05D004089 1.4e-12 76.3 77 75.3
Ca_09969_v3 Cicer arietinum L. HOM05D003369 ORTHO05D004089 1.4e-12 76.3 82 70.7
Eucgr.J00108 Eucalyptus grandis HOM05D003369 ORTHO05D004089 1.4e-12 76.3 83 74.7
Lalb_Chr02g0149391 Lupinus albus HOM05D003369 ORTHO05D004089 1.4e-12 76.3 91 64.8
Phvul.010G077634 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 1.4e-12 76.3 85 69.4
Medtr6g086565 Medicago truncatula HOM05D003369 ORTHO05D004089 1.8e-12 75.9 83 69.9
Sp4g23040 Schrenkiella parvula HOM05D003369 ORTHO05D004089 1.8e-12 75.9 77 77.9
Sc05g0004490 Simmondsia chinensis HOM05D003369 ORTHO05D004089 1.8e-12 75.9 82 74.4
VMungo0720G1409 Vigna mungo HOM05D003369 ORTHO05D004089 1.8e-12 75.9 87 66.7
Gohir.D06G186800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 2.4e-12 75.5 81 67.9
Potri.013G090500 Populus trichocarpa HOM05D003369 ORTHO05D004089 2.4e-12 75.5 86 72.1
Nn2g10283 Nelumbo nucifera HOM05D003369 ORTHO05D004089 3.1e-12 75.1 78 78.2
Gohir.A05G277600 Gossypium hirsutum HOM05D003369 ORTHO05D004089 5.3e-12 74.3 86 70.9
Glyma.18G240600 Glycine max HOM05D003369 ORTHO05D004089 6.9e-12 73.9 81 67.9
PSO017G0651 Papaver somniferum HOM05D003369 ORTHO05D004089 1.2e-11 73.2 100 58.0
DCAR_005880 Daucus carota HOM05D003369 ORTHO05D020257 1.5e-11 72.8 86 64.0
CiPaw.09G143000 Carya illinoinensis HOM05D003369 ORTHO05D004089 2.6e-11 72.0 81 72.8
DCAR_007356 Daucus carota HOM05D003369 ORTHO05D004089 2.6e-11 72.0 85 61.2
VMungo1383G1217 Vigna mungo HOM05D003369 ORTHO05D004089 2.6e-11 72.0 82 67.1
arahy.Tifrunner.gnm1.ann1.ABG2GV Arachis hypogaea HOM05D003369 ORTHO05D004089 3.4e-11 71.6 79 72.2
arahy.Tifrunner.gnm1.ann1.HI4H5F Arachis hypogaea HOM05D003369 ORTHO05D004089 3.4e-11 71.6 79 72.2
AUR62042224 Chenopodium quinoa HOM05D003369 ORTHO05D004089 5.9e-11 70.9 75 78.7
SalBow3G2694 Salvia bowleyana HOM05D003369 ORTHO05D004089 7.7e-11 70.5 104 53.8
PSO170G0385 Papaver somniferum HOM05D003369 ORTHO05D004089 1.0e-10 70.1 100 56.0
PGR044G0140 Punica granatum HOM05D003369 ORTHO05D004089 1.0e-10 70.1 85 74.1
Phvul.008G055600 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 1.3e-10 69.7 82 64.6
AUR62037781 Chenopodium quinoa HOM05D003369 ORTHO05D004089 1.7e-10 69.3 75 77.3
Nitab4.5_0000171g0170 Nicotiana tabacum HOM05D003369 ORTHO05D004089 1.7e-10 69.3 113 48.7
Cpa.g.sc19.47 Carica papaya HOM05D003369 ORTHO05D004089 2.2e-10 68.9 86 66.3
Gohir.D05G279200 Gossypium hirsutum HOM05D003369 ORTHO05D004089 2.9e-10 68.6 86 68.6
Gorai.009G292700 Gossypium raimondii HOM05D003369 ORTHO05D004089 2.9e-10 68.6 86 68.6
CSS0036715 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 5.0e-10 67.8 76 61.8
MD00G1126900 Malus domestica HOM05D003369 ORTHO05D004089 5.0e-10 67.8 86 67.4
Peaxi162Scf00739g00425 Petunia axillaris HOM05D003369 ORTHO05D004089 6.5e-10 67.4 114 49.1
Sopen06g015200 Solanum pennellii HOM05D003369 ORTHO05D004089 8.5e-10 67.0 113 47.8
PGSC0003DMG400016657 Solanum tuberosum HOM05D003369 ORTHO05D004089 8.5e-10 67.0 113 47.8
EL10Ac3g06746 Beta vulgaris HOM05D003369 ORTHO05D004089 1.4e-09 66.2 83 72.3
Sabra19G0074300 Salix brachista HOM05D003369 ORTHO05D004089 1.9e-09 65.9 86 67.4
Haze_05901 Corylus avellana HOM05D003369 ORTHO05D004089 2.5e-09 65.5 79 72.2
MELO3C026565.2 Cucumis melo HOM05D003369 ORTHO05D020257 2.5e-09 65.5 91 42.9
CiPaw.10G110000 Carya illinoinensis HOM05D003369 ORTHO05D004089 3.2e-09 65.1 82 70.7
HanXRQChr15g0493711 Helianthus annuus HOM05D003369 ORTHO05D004089 5.5e-09 64.3 93 59.1
Lj8A53T101 Lonicera japonica HOM05D003369 ORTHO05D004089 7.2e-09 63.9 96 63.5
Solyc06g048890.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 9.4e-09 63.5 110 49.1
CAN.G203.55 Capsicum annuum HOM05D003369 ORTHO05D004089 1.6e-08 62.8 118 45.8
GSVIVG01032663001 Vitis vinifera HOM05D003369 ORTHO05D004089 2.1e-08 62.4 83 68.7
FAN07G2686 Fragaria x ananassa HOM05D003369 ORTHO05D004089 2.7e-08 62.0 88 65.9
Medtr1g078370 Medicago truncatula HOM05D003369 ORTHO05D004089 3.6e-08 61.6 82 51.2
unitig_0.g2517 Utricularia gibba HOM05D003369 ORTHO05D004089 6.1e-08 60.8 79 65.8
Aa31LG3G1410 Aethionema arabicum HOM05D003369 ORTHO05D004089 7.9e-08 60.5 85 68.2
Nitab4.5_0000375g0250 Nicotiana tabacum HOM05D003369 ORTHO05D004089 7.9e-08 60.5 115 46.1
ATR1127G027 Amborella trichopoda HOM05D003369 ORTHO05D004089 1.0e-07 60.1 90 63.3
Nitab4.5_0011372g0040 Nicotiana tabacum HOM05D003369 ORTHO05D004089 1.0e-07 60.1 115 47.8
QL05p063633 Quercus lobata HOM05D003369 ORTHO05D004089 1.0e-07 60.1 81 60.5
QL93p0201_0001 Quercus lobata HOM05D003369 ORTHO05D020257 1.0e-07 60.1 81 60.5
Potri.019G059200 Populus trichocarpa HOM05D003369 ORTHO05D004089 1.4e-07 59.7 86 65.1
Dinv34494 Davidia involucrata HOM05D003369 ORTHO05D004089 2.3e-07 58.9 38 68.4
Hma1.2p1_0264F.1_g106040 Hydrangea macrophylla HOM05D003369 ORTHO05D004089 2.3e-07 58.9 87 66.7
Zm00001eb149610 Zea mays HOM05D003369 ORTHO05D004089 2.3e-07 58.9 109 52.3
Lsat_1_v5_gn_9_60180 Lactuca sativa HOM05D003369 ORTHO05D004089 3.0e-07 58.5 91 50.5
Migut.F00574 Erythranthe guttata HOM05D003369 ORTHO05D004089 1.1e-06 56.6 84 60.7
SGA_v2.0_scaffold327G48760 Striga asiatica HOM05D003369 ORTHO05D004089 1.5e-06 56.2 90 41.1
Zm00001eb368920 Zea mays HOM05D003369 ORTHO05D004089 1.5e-06 56.2 108 45.4
CDE07G0902 Ceratophyllum demersum HOM05D003369 ORTHO05D004089 3.3e-06 55.1 75 66.7
Os01g0819900 Oryza sativa ssp. japonica HOM05D003369 ORTHO05D004089 5.7e-06 54.3 112 49.1


User provided reference genes

Program Settings