Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 0.0e+00 1362.4 692 100.0
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 0.0e+00 1096.6 693 80.7
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 0.0e+00 1076.6 691 80.0
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 2.7e-310 1068.1 691 79.5
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 5.7e-308 1060.4 690 78.8
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 2.2e-283 978.8 627 80.2
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 4.0e-269 931.4 691 68.0
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 8.4e-267 923.7 690 67.7
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 8.4e-267 923.7 693 67.8
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 1.9e-266 922.5 692 68.1
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 9.2e-266 920.2 692 67.1
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 3.5e-265 918.3 693 67.5
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 1.0e-264 916.8 693 68.0
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 1.4e-261 906.4 690 66.8
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 2.4e-261 905.6 691 67.3
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 6.8e-261 904.0 692 66.0
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 9.3e-258 893.6 692 65.8
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 1.6e-257 892.9 693 66.1
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 2.7e-257 892.1 692 64.6
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 2.7e-257 892.1 692 65.5
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 1.0e-256 890.2 693 64.9
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 3.9e-256 888.3 692 65.0
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 1.5e-255 886.3 693 65.5
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 1.5e-255 886.3 690 65.4
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 1.9e-255 885.9 693 65.2
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 2.5e-255 885.6 693 64.6
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 9.6e-255 883.6 693 65.4
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 4.8e-254 881.3 693 64.2
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 6.2e-254 880.9 693 64.5
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 4.0e-253 878.2 695 65.6
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 9.0e-253 877.1 692 64.5
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 1.4e-250 869.8 692 63.9
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 2.4e-250 869.0 693 63.5
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 2.4e-250 869.0 692 64.5
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 7.1e-250 867.5 693 64.1
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 1.2e-249 866.7 691 63.8
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 4.6e-249 864.8 690 64.5
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 7.9e-249 864.0 693 63.5
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 5.1e-248 861.3 693 64.9
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 8.7e-248 860.5 693 63.2
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 7.3e-247 857.4 693 62.5
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 9.6e-247 857.1 691 64.0
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 2.1e-246 855.9 693 62.5
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 2.8e-246 855.5 696 63.5
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 9.9e-244 847.0 709 61.2
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 4.9e-243 844.7 679 65.2
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 7.9e-241 837.4 693 61.3
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 7.9e-241 837.4 726 59.6
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 7.9e-241 837.4 724 59.5
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 1.8e-240 836.3 693 61.3
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 1.3e-238 830.1 693 59.9
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 2.8e-238 828.9 699 60.7
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 3.1e-237 825.5 692 60.7
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 4.0e-237 825.1 693 59.6
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 9.0e-237 823.9 777 57.5
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 1.5e-236 823.2 698 59.2
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 5.8e-236 821.2 694 60.4
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 5.8e-236 821.2 694 60.5
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 6.5e-235 817.8 694 59.7
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 6.5e-235 817.8 692 59.5
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 1.1e-234 817.0 693 62.3
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 7.1e-234 814.3 691 60.8
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 1.2e-233 813.5 690 60.4
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 1.8e-232 809.7 690 60.0
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 8.7e-232 807.4 693 59.7
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 1.1e-231 807.0 698 58.6
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.3e-231 805.1 689 62.0
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 5.7e-231 804.7 766 56.1
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 2.8e-230 802.4 721 57.6
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 6.3e-230 801.2 699 57.7
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 8.2e-230 800.8 743 58.5
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 8.2e-230 800.8 681 58.9
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 1.1e-229 800.4 694 57.9
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 4.1e-229 798.5 749 55.0
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.2e-226 788.9 625 65.0
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 7.2e-226 787.7 671 60.1
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 1.3e-222 776.9 694 58.9
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 4.8e-222 775.0 768 53.1
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 8.2e-222 774.2 693 57.0
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 1.5e-220 770.0 672 59.8
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 3.2e-218 762.3 693 57.0
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 2.7e-217 759.2 604 65.6
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 1.1e-215 753.8 731 55.4
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 4.3e-215 751.9 691 55.9
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 2.8e-214 749.2 691 55.3
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 6.3e-214 748.0 693 55.8
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 1.8e-213 746.5 667 58.3
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 7.7e-212 741.1 619 62.5
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 6.1e-209 731.5 691 55.4
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 1.3e-206 723.8 604 62.3
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 2.0e-204 716.5 712 54.5
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 1.5e-202 710.3 723 52.7
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 9.4e-202 707.6 690 55.1
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 3.1e-197 692.6 692 53.0
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 2.2e-187 659.8 561 61.5
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 6.5e-187 658.3 682 53.4
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 1.7e-182 643.7 696 52.3
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 2.2e-174 616.7 541 59.5
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.7e-172 609.8 640 51.7
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 5.6e-162 575.5 694 46.0
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 2.2e-158 563.5 711 43.0
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.3e-137 494.6 369 67.2
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 4.0e-136 489.6 724 39.9
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 8.7e-123 445.3 309 71.2
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 2.4e-120 437.2 608 43.3
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 6.5e-94 349.4 368 52.2
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 7.9e-92 342.4 306 55.9
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 1.4e-91 341.7 355 51.0
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 2.7e-71 274.2 692 31.1
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.4e-66 256.9 287 50.5
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 2.0e-63 248.1 362 41.4
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 1.1e-53 215.7 331 37.2
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 2.8e-52 211.1 159 61.0
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 4.4e-42 177.2 761 25.2
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 4.7e-36 157.1 366 30.3
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 4.6e-31 140.6 164 46.3
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 2.8e-28 131.3 157 45.9
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 9.3e-24 116.3 110 52.7
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 3.5e-23 114.4 83 59.0
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 1.2e-18 99.4 143 44.1
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 2.2e-17 95.1 102 50.0
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 6.4e-17 93.6 82 50.0
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 3.5e-15 87.8 62 61.3
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 3.5e-15 87.8 62 61.3
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 1.9e-13 82.0 83 50.6
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.5e-13 81.6 46 67.4
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 2.1e-12 78.6 42 88.1
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.1e-11 76.3 65 53.8
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.4e-11 75.9 49 67.3
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 1.8e-11 75.5 51 64.7
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.1e-11 74.7 48 68.8
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 4.5e-10 70.9 42 76.2
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 9.9e-10 69.7 42 76.2
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.2e-09 68.6 85 47.1
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 3.8e-09 67.8 35 82.9
SGA_v2.0_scaffold17G07933 Striga asiatica HOM05D002544 ORTHO05D399483 5.1e-06 57.4 35 65.7


User provided reference genes

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