Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 3.3e-124 448.4 224 100.0
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 3.1e-98 362.1 230 83.0
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 1.1e-87 327.0 231 74.9
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 5.2e-85 318.2 227 74.4
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 4.4e-84 315.1 227 73.6
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 5.7e-84 314.7 227 72.7
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 2.2e-83 312.8 225 73.8
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 1.0e-77 293.9 214 72.0
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 1.0e-77 293.9 214 71.5
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 6.8e-77 291.2 214 71.0
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 2.2e-75 286.2 189 75.1
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 6.4e-75 284.6 212 68.9
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 6.4e-75 284.6 194 73.7
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 5.4e-74 281.6 192 74.5
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 1.6e-73 280.0 223 66.8
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 1.3e-72 276.9 212 67.9
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 2.3e-72 276.2 213 66.2
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 1.1e-71 273.9 184 71.7
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 1.9e-71 273.1 198 70.7
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 2.1e-70 269.6 222 64.9
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 2.1e-70 269.6 222 64.9
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 2.1e-70 269.6 202 69.3
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 2.8e-70 269.2 189 72.0
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 3.6e-70 268.9 204 67.2
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 6.2e-70 268.1 203 68.5
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.1e-69 267.3 207 65.2
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 1.4e-69 266.9 209 67.0
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 1.4e-69 266.9 219 64.8
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 2.3e-69 266.2 199 67.3
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 4.0e-69 265.4 208 65.9
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.5e-68 263.5 207 64.7
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 1.5e-68 263.5 223 61.4
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 2.0e-68 263.1 205 65.4
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 2.6e-68 262.7 202 66.8
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 2.6e-68 262.7 194 69.6
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 2.6e-68 262.7 199 67.8
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 2.6e-68 262.7 189 69.8
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 3.4e-68 262.3 197 67.0
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 5.8e-68 261.5 222 61.3
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 5.8e-68 261.5 180 71.7
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 5.8e-68 261.5 180 71.7
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 5.8e-68 261.5 218 61.9
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 9.8e-68 260.8 187 68.4
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 1.3e-67 260.4 200 66.0
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.3e-67 260.4 192 68.8
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 1.3e-67 260.4 223 60.5
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.7e-67 260.0 194 68.6
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.7e-67 260.0 194 68.6
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 1.7e-67 260.0 219 61.2
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 2.9e-67 259.2 192 68.2
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 2.9e-67 259.2 191 69.6
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 3.7e-67 258.8 178 71.9
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 3.7e-67 258.8 178 71.9
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 4.9e-67 258.5 180 68.9
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 4.9e-67 258.5 204 66.7
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 6.4e-67 258.1 203 63.5
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 6.4e-67 258.1 211 62.6
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 1.4e-66 256.9 179 68.7
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 1.9e-66 256.5 198 65.2
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 3.2e-66 255.8 205 63.4
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 1.6e-65 253.4 180 68.3
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 2.1e-65 253.1 212 65.1
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 2.7e-65 252.7 209 63.6
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 3.5e-65 252.3 199 65.8
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 1.0e-64 250.8 206 62.6
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 1.0e-64 250.8 178 68.0
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 1.3e-64 250.4 203 65.5
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 2.3e-64 249.6 183 67.8
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 5.1e-64 248.4 201 63.2
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 2.5e-63 246.1 179 67.0
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 5.6e-63 245.0 206 60.7
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 5.6e-63 245.0 182 65.9
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.6e-62 243.4 191 67.5
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 4.7e-62 241.9 204 59.3
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 4.0e-61 238.8 178 63.5
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 5.2e-61 238.4 174 69.0
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 2.4e-58 229.6 180 63.3
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 4.1e-58 228.8 251 50.6
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 7.8e-57 224.6 144 76.4
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 3.0e-56 222.6 147 72.8
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 6.6e-56 221.5 206 59.7
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 1.5e-55 220.3 180 64.4
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 7.3e-55 218.0 144 74.3
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 1.6e-54 216.9 170 66.5
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 2.1e-54 216.5 173 61.3
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 2.8e-54 216.1 161 68.9
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 2.0e-52 209.9 182 58.2
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 3.4e-52 209.1 205 52.2
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.3e-51 207.2 165 64.8
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 1.7e-51 206.8 176 54.5
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 8.4e-51 204.5 176 54.0
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 1.2e-49 200.7 174 59.2
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 1.6e-49 200.3 176 57.4
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 1.5e-47 193.7 167 56.9
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 1.3e-46 190.7 173 59.5
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 1.1e-39 167.5 162 58.0
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 7.4e-39 164.9 136 60.3
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 1.5e-36 157.1 116 69.0
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 9.9e-36 154.5 215 44.7
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 4.9e-35 152.1 161 46.0
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 9.3e-34 147.9 126 58.7
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 2.7e-33 146.4 128 55.5
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 2.4e-29 133.3 173 44.5
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 5.3e-29 132.1 91 68.1
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 1.5e-28 130.6 91 67.0
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 2.6e-28 129.8 179 43.6
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 7.9e-25 118.2 239 35.1
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 1.2e-20 104.4 96 59.4
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 1.2e-20 104.4 57 80.7
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 4.5e-20 102.4 78 61.5
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 1.7e-19 100.5 95 58.9
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 4.2e-18 95.9 178 36.5
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 1.3e-16 90.9 65 67.7
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 4.3e-15 85.9 67 65.7
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 1.8e-13 80.5 92 46.7
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 5.5e-10 68.9 187 29.4
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 7.9e-09 65.1 72 55.6
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 1.4e-08 64.3 208 26.9
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 6.7e-08 62.0 174 28.2
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 8.8e-08 61.6 181 25.4
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 8.8e-08 61.6 194 26.8
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 8.8e-08 61.6 171 27.5
GSVIVG01022998001 Vitis vinifera HOM05D003483 ORTHO05D004101 1.1e-07 61.2 178 27.5
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 1.5e-07 60.8 172 27.3
Manes.07G014500 Manihot esculenta HOM05D003483 ORTHO05D004101 3.3e-07 59.7 171 26.9
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 7.4e-07 58.5 173 27.2
COL.COLO4_17881 Corchorus olitorius HOM05D003483 ORTHO05D004101 9.7e-07 58.2 173 26.6
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 1.3e-06 57.8 35 74.3
Lj6g0022843 Lotus japonicus HOM05D003483 ORTHO05D004101 1.3e-06 57.8 174 28.2
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 1.3e-06 57.8 181 25.4
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 1.7e-06 57.4 175 25.7
Peaxi162Scf00011g00242 Petunia axillaris HOM05D003483 ORTHO05D004101 2.2e-06 57.0 174 27.0
Phvul.006G213100 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 2.2e-06 57.0 173 26.6
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 2.8e-06 56.6 169 27.2
Thecc.02G039800 Theobroma cacao HOM05D003483 ORTHO05D004101 3.7e-06 56.2 181 25.4


User provided reference genes

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