Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 1.4e-59 232.6 111 100.0
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 2.1e-34 149.1 110 64.5
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 7.9e-34 147.1 112 63.4
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 1.6e-23 112.8 90 58.9
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 4.5e-21 104.8 111 54.1
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 2.2e-20 102.4 97 47.4
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 3.8e-20 101.7 111 53.2
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 9.3e-19 97.1 109 52.3
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 1.2e-18 96.7 94 48.9
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 1.6e-18 96.3 109 52.3
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 7.9e-18 94.0 126 46.8
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 1.8e-17 92.8 103 52.4
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 3.9e-17 91.7 131 43.5
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 1.1e-16 90.1 85 47.1
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 5.7e-16 87.8 60 56.7
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 9.7e-16 87.0 133 38.3
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 2.2e-15 85.9 59 62.7
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 2.2e-15 85.9 56 60.7
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 2.8e-15 85.5 73 57.5
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 3.7e-15 85.1 49 69.4
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 1.1e-14 83.6 62 50.0
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 2.4e-14 82.4 118 40.7
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 2.4e-14 82.4 106 43.4
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 3.1e-14 82.0 118 41.5
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 3.1e-14 82.0 73 54.8
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 4.1e-14 81.6 46 67.4
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 5.3e-14 81.3 66 51.5
CANSAT01G0578 Cannabis sativa HOM05D007757 ORTHO05D009619 2.0e-13 79.3 60 58.3
Cc11_g10120 Coffea canephora HOM05D007757 ORTHO05D009619 2.0e-13 79.3 91 41.8
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 5.9e-13 77.8 121 43.0
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 5.9e-13 77.8 64 54.7
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 5.9e-13 77.8 92 44.6
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 1.0e-12 77.0 52 61.5
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 1.0e-12 77.0 52 61.5
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 1.0e-12 77.0 52 61.5
Nn3g17018 Nelumbo nucifera HOM05D021434 ORTHO05D009619 1.0e-12 77.0 95 40.0
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 1.7e-12 76.3 73 52.1
Lalb_Chr06g0166051 Lupinus albus HOM05D007757 ORTHO05D009619 3.8e-12 75.1 98 40.8
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 3.8e-12 75.1 119 41.2
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 5.0e-12 74.7 52 59.6
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 5.0e-12 74.7 52 59.6
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 5.0e-12 74.7 101 45.5
Nn4g23846 Nelumbo nucifera HOM05D021434 ORTHO05D009619 8.5e-12 73.9 110 40.0
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 8.5e-12 73.9 105 36.2
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 8.5e-12 73.9 123 39.8
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 1.4e-11 73.2 119 40.3
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 2.5e-11 72.4 52 57.7
CARHR026040 Cardamine hirsuta HOM05D007757 ORTHO05D009619 2.5e-11 72.4 51 56.9
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 2.5e-11 72.4 52 57.7
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 3.2e-11 72.0 52 57.7
Rhsim09G0107900 Rhododendron simsii HOM05D007757 ORTHO05D009619 4.2e-11 71.6 112 39.3
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 9.4e-11 70.5 42 59.5
Ciclev10017153m.g Citrus clementina HOM05D007757 ORTHO05D009619 1.2e-10 70.1 85 47.1
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 1.6e-10 69.7 76 46.1
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 1.6e-10 69.7 76 46.1
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 1.6e-10 69.7 76 46.1
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 1.6e-10 69.7 76 46.1
Nn3g17848 Nelumbo nucifera HOM05D021434 ORTHO05D009619 1.6e-10 69.7 71 42.3
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 2.1e-10 69.3 48 56.2
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 2.1e-10 69.3 110 40.9
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 2.7e-10 68.9 41 61.0
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 2.7e-10 68.9 51 60.8
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 3.6e-10 68.6 76 44.7
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 3.6e-10 68.6 51 58.8
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 3.6e-10 68.6 51 58.8
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 3.6e-10 68.6 51 58.8
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 7.9e-10 67.4 41 61.0
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 7.9e-10 67.4 51 58.8
AT1G25422 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 1.8e-09 66.2 45 57.8
Sc11g0003440 Simmondsia chinensis HOM05D007757 ORTHO05D009619 1.8e-09 66.2 93 40.9
Carub.0001s2507 Capsella rubella HOM05D007757 ORTHO05D009619 6.7e-09 64.3 42 61.9
AL1G39890 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 1.5e-08 63.2 42 59.5
EL10Ac6g14396 Beta vulgaris HOM05D007757 ORTHO05D009619 1.9e-08 62.8 59 52.5
BcaB03g14042 Brassica carinata HOM05D007757 ORTHO05D009619 1.9e-08 62.8 48 50.0
BcaC06g35205 Brassica carinata HOM05D007757 ORTHO05D009619 1.9e-08 62.8 48 50.0
A07p12600 Brassica napus HOM05D007757 ORTHO05D009619 1.9e-08 62.8 48 50.0
C07p18700 Brassica napus HOM05D007757 ORTHO05D009619 1.9e-08 62.8 48 50.0
BolC7t42380H Brassica oleracea HOM05D007757 ORTHO05D009619 1.9e-08 62.8 48 50.0
BraA07t29038Z Brassica rapa HOM05D007757 ORTHO05D009619 1.9e-08 62.8 48 50.0
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 1.9e-08 62.8 45 55.6
Sp1g22790 Schrenkiella parvula HOM05D007757 ORTHO05D009619 5.7e-08 61.2 48 47.9
Lj5g0000209 Lotus japonicus HOM05D007757 ORTHO05D009619 7.4e-08 60.8 71 43.7
MSTRG.2233 Avicennia marina HOM05D007757 ORTHO05D009619 2.8e-07 58.9 119 31.9
BcaC05g26671 Brassica carinata HOM05D007757 ORTHO05D009619 6.3e-07 57.8 43 51.2
AUR62035218 Chenopodium quinoa HOM05D007757 ORTHO05D009619 1.1e-06 57.0 57 49.1
BcaC05g26463 Brassica carinata HOM05D007757 ORTHO05D009619 1.8e-06 56.2 43 48.8
A09p39320 Brassica napus HOM05D007757 ORTHO05D009619 1.8e-06 56.2 43 48.8
C05p25050 Brassica napus HOM05D007757 ORTHO05D009619 1.8e-06 56.2 43 48.8
BolC5t31238H Brassica oleracea HOM05D007757 ORTHO05D009619 1.8e-06 56.2 43 48.8
BraA09t39435Z Brassica rapa HOM05D007757 ORTHO05D009619 1.8e-06 56.2 43 48.8
SGA_v2.0_scaffold36G14535 Striga asiatica HOM05D007757 ORTHO05D009619 3.1e-06 55.5 57 35.1


User provided reference genes

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