Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 0.0e+00 1614.4 806 100.0
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 0.0e+00 1290.4 838 78.5
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 0.0e+00 1277.3 833 77.8
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1252.3 838 75.9
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1251.5 838 75.9
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 0.0e+00 1251.5 838 75.9
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 1.2e-309 1066.2 849 64.9
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 1.3e-308 1062.8 848 65.0
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 1.3e-308 1062.8 838 65.8
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 7.4e-307 1057.0 841 64.7
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 9.0e-305 1050.0 841 64.4
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 4.5e-304 1047.7 844 63.5
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 7.9e-301 1036.9 819 64.1
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 5.1e-300 1034.2 839 62.9
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.1e-299 1033.1 839 62.8
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 1.5e-296 1022.7 903 59.9
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 1.9e-294 1015.8 838 61.5
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 6.7e-292 1007.3 843 61.4
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 2.2e-290 1002.3 844 61.7
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 3.7e-290 1001.5 813 64.2
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 3.1e-289 998.4 841 61.2
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 1.3e-287 993.0 842 61.4
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 7.2e-286 987.3 842 60.9
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 2.3e-284 982.2 843 61.2
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 1.5e-283 979.5 838 60.1
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 2.8e-282 975.3 845 60.5
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 4.8e-282 974.5 835 60.2
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.8e-281 972.6 834 59.8
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 5.3e-281 971.1 845 60.4
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 3.4e-280 968.4 842 59.7
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 7.7e-280 967.2 842 60.2
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.3e-279 966.5 835 59.9
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 6.5e-279 964.1 836 59.9
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 3.6e-277 958.4 841 59.2
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.0e-276 956.8 895 56.3
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 1.8e-276 956.1 836 60.6
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 1.5e-275 953.0 838 58.6
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 3.7e-274 948.3 834 59.4
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 8.2e-274 947.2 842 58.4
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 2.0e-272 942.6 842 59.6
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 1.0e-271 940.3 838 57.8
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 1.1e-270 936.8 842 58.2
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 3.2e-270 935.3 880 56.7
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 5.5e-270 934.5 842 58.6
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.6e-269 932.9 848 57.8
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 5.2e-268 927.9 849 57.2
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 5.2e-268 927.9 835 58.3
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 2.0e-267 926.0 848 57.4
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 9.7e-267 923.7 849 56.9
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 1.7e-266 922.9 835 58.3
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 6.3e-266 921.0 833 57.1
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 8.2e-266 920.6 836 58.0
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 1.2e-264 916.8 843 56.9
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 2.0e-264 916.0 833 58.0
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 2.6e-264 915.6 850 56.6
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 3.5e-264 915.2 835 57.5
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 1.7e-263 912.9 847 57.3
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 6.5e-263 911.0 847 57.1
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 6.5e-263 911.0 847 57.1
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 1.1e-262 910.2 840 57.3
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 7.2e-262 907.5 846 56.9
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 2.1e-261 906.0 837 56.2
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 4.7e-261 904.8 853 56.6
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 8.0e-261 904.0 854 56.3
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 1.2e-259 900.2 838 56.0
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 1.5e-259 899.8 839 57.2
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 2.2e-258 896.0 834 56.7
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 4.1e-257 891.7 839 56.4
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 5.3e-257 891.3 838 56.4
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 9.1e-257 890.6 835 55.9
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 3.5e-256 888.6 834 55.6
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 1.0e-255 887.1 863 56.1
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 1.9e-254 882.9 847 54.9
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 1.6e-253 879.8 838 55.5
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 4.0e-252 875.2 853 55.6
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 8.8e-252 874.0 839 55.7
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 7.5e-251 870.9 841 54.8
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 9.8e-251 870.5 843 55.5
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 2.8e-250 869.0 850 55.6
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 1.1e-249 867.1 844 54.5
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 9.1e-249 864.0 813 55.2
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 5.5e-246 854.7 841 54.6
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 6.1e-245 851.3 841 54.6
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 2.3e-244 849.4 852 54.5
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 9.8e-243 844.0 826 55.3
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 2.7e-240 835.9 839 53.8
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.4e-236 823.5 814 53.6
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 1.6e-229 800.0 837 51.0
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 4.6e-224 781.9 742 56.5
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 4.6e-224 781.9 839 51.1
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 1.6e-221 773.5 583 67.4
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 2.3e-220 769.6 623 60.8
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.1e-220 769.2 856 51.2
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 6.4e-218 761.5 838 49.4
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 2.8e-213 746.1 844 49.5
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 2.3e-207 726.5 840 47.1
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 5.6e-206 721.8 841 47.3
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 3.8e-194 682.6 812 45.8
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 1.8e-191 673.7 548 62.6
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 8.1e-189 664.8 912 43.9
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 7.7e-171 605.1 842 43.2
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 6.5e-170 602.1 844 43.2
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 1.0e-167 594.7 848 40.8
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.7e-165 587.4 876 42.4
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 1.4e-159 567.8 843 42.1
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 2.3e-159 567.0 461 63.8
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 1.7e-157 560.8 829 41.5
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 5.4e-140 502.7 877 37.9
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 2.1e-136 490.7 811 41.1
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 8.8e-135 485.3 858 36.9
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 3.1e-132 476.9 568 46.8
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 1.3e-130 471.5 713 40.5
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 6.8e-127 459.1 338 67.2
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.7e-125 454.5 471 51.8
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 1.0e-122 445.3 852 35.6
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 5.0e-122 443.0 833 36.0
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 4.9e-117 426.4 876 34.1
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 1.3e-93 348.6 381 48.0
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 1.8e-87 328.2 757 30.5
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 4.0e-79 300.4 382 45.8
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 1.6e-59 235.3 304 47.7
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 2.3e-58 231.5 303 47.5
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 2.5e-57 228.0 303 47.2
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 1.2e-51 209.1 739 27.7
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.0e-45 189.5 153 60.8
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 1.7e-45 188.7 222 50.5
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 2.9e-45 188.0 228 46.9
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.3e-40 172.6 156 59.6
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 1.7e-40 172.2 768 24.0
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 2.5e-36 158.3 141 56.7
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 3.6e-35 154.5 464 30.0
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 2.3e-34 151.8 136 55.1
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 1.2e-27 129.4 104 61.5
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 1.6e-22 112.5 115 48.7
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 5.2e-18 97.4 60 78.3
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 2.6e-17 95.1 63 73.0
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 7.8e-14 83.6 65 60.0
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 2.8e-11 75.1 142 36.6
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.8e-10 72.4 73 47.9
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 2.3e-10 72.0 142 35.9
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 1.7e-08 65.9 97 38.1
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 2.9e-08 65.1 46 65.2
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 4.9e-08 64.3 46 63.0
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 1.8e-07 62.4 39 79.5
C07p03290 Brassica napus HOM05D004893 ORTHO05D032397 1.8e-07 62.4 39 79.5
BolC7t40730H Brassica oleracea HOM05D004893 ORTHO05D032397 1.8e-07 62.4 39 79.5


User provided reference genes

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