Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_37718 Corchorus olitorius HOM05D018436 ORTHO05D008524 5.5e-86 321.2 199 100.0
COL.COLO4_32474 Corchorus olitorius HOM05D018436 ORTHO05D025173 1.8e-25 120.2 92 65.2
Thecc.09G176700 Theobroma cacao HOM05D018436 ORTHO05D025173 5.0e-23 112.1 134 48.5
Gohir.D08G093600 Gossypium hirsutum HOM05D018436 ORTHO05D025173 5.9e-16 88.6 184 38.6
Gorai.004G099200 Gossypium raimondii HOM05D018436 ORTHO05D025173 6.6e-15 85.1 184 38.0
Gohir.A08G084000 Gossypium hirsutum HOM05D018436 ORTHO05D025173 1.5e-14 84.0 165 37.0
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 4.0e-12 75.9 82 46.3
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 1.5e-11 73.9 86 45.3
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 3.4e-11 72.8 79 46.8
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 4.4e-11 72.4 79 46.8
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 5.8e-11 72.0 69 53.6
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 5.8e-11 72.0 81 44.4
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 2.9e-10 69.7 76 50.0
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 2.9e-10 69.7 78 44.9
SalBow6G4300 Salvia bowleyana HOM05D007262 ORTHO05D008524 2.9e-10 69.7 79 51.9
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 2.9e-10 69.7 77 51.9
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 3.7e-10 69.3 77 49.4
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 3.7e-10 69.3 73 46.6
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 3.7e-10 69.3 73 46.6
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 3.7e-10 69.3 73 46.6
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 6.4e-10 68.6 78 48.7
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 8.3e-10 68.2 75 45.3
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 1.1e-09 67.8 77 49.4
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 1.9e-09 67.0 72 48.6
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 2.4e-09 66.6 82 47.6
COL.COLO4_28647 Corchorus olitorius HOM05D015664 ORTHO05D008524 2.4e-09 66.6 81 48.1
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 3.2e-09 66.2 79 45.6
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 4.1e-09 65.9 77 46.8
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 4.1e-09 65.9 74 44.6
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 5.4e-09 65.5 83 44.6
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 5.4e-09 65.5 91 45.1
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 7.0e-09 65.1 89 43.8
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 9.2e-09 64.7 66 50.0
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 9.2e-09 64.7 91 47.3
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 3.5e-08 62.8 68 45.6
Eucgr.C00152 Eucalyptus grandis HOM05D007262 ORTHO05D008524 3.5e-08 62.8 77 41.6
LjContig00357g0012454 Lotus japonicus HOM05D002277 ORTHO05D001770 3.5e-08 62.8 90 37.8
MSTRG.5517 Avicennia marina HOM05D002277 ORTHO05D001770 4.6e-08 62.4 78 39.7
Cpa.g.sc233.5 Carica papaya HOM05D018436 ORTHO05D008524 4.6e-08 62.4 96 37.5
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 4.6e-08 62.4 79 44.3
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 6.0e-08 62.0 89 37.1
Haze_21138 Corylus avellana HOM05D002277 ORTHO05D001770 7.8e-08 61.6 68 45.6
Haze_21144 Corylus avellana HOM05D002277 ORTHO05D001770 7.8e-08 61.6 68 45.6
Haze_21148 Corylus avellana HOM05D002277 ORTHO05D001770 7.8e-08 61.6 68 45.6
Duzib128G1044 Durio zibethinus HOM05D015664 ORTHO05D008524 7.8e-08 61.6 81 44.4
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 7.8e-08 61.6 66 50.0
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 1.0e-07 61.2 66 51.5
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 1.3e-07 60.8 97 37.1
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 1.3e-07 60.8 97 37.1
Migut.J01486 Erythranthe guttata HOM05D007262 ORTHO05D008524 1.3e-07 60.8 93 44.1
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 1.3e-07 60.8 79 41.8
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.3e-07 60.8 79 41.8
Atru.chr7.610 Acer truncatum HOM05D015664 ORTHO05D008524 1.7e-07 60.5 58 50.0
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 1.7e-07 60.5 69 46.4
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 2.3e-07 60.1 97 37.1
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 2.3e-07 60.1 97 37.1
MELO3C017459.2 Cucumis melo HOM05D015664 ORTHO05D008524 2.3e-07 60.1 87 40.2
CsaV3_1G031630 Cucumis sativus L. HOM05D015664 ORTHO05D008524 2.3e-07 60.1 87 40.2
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 2.3e-07 60.1 72 40.3
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 2.3e-07 60.1 66 47.0
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 2.3e-07 60.1 76 40.8
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 3.0e-07 59.7 88 43.2
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 3.9e-07 59.3 69 46.4
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 3.9e-07 59.3 74 40.5
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 3.9e-07 59.3 74 43.2
Oeu064877.1 Olea europaea HOM05D002277 ORTHO05D001770 3.9e-07 59.3 80 40.0
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 3.9e-07 59.3 67 46.3
TPR.G649 Trifolium pratense HOM05D002277 ORTHO05D001770 3.9e-07 59.3 64 43.8
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 3.9e-07 59.3 74 39.2
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 5.0e-07 58.9 69 46.4
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 5.0e-07 58.9 64 50.0
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 6.6e-07 58.5 71 46.5
Glyma.11G235700 Glycine max HOM05D002277 ORTHO05D001770 6.6e-07 58.5 83 41.0
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 6.6e-07 58.5 89 37.1
Os05g0476000 Oryza sativa ssp. japonica HOM05D002277 ORTHO05D001770 6.6e-07 58.5 89 39.3
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 6.6e-07 58.5 77 39.0
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 6.6e-07 58.5 79 41.8
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 8.6e-07 58.2 85 36.5
Ciclev10009553m.g Citrus clementina HOM05D007262 ORTHO05D008524 8.6e-07 58.2 94 38.3
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 8.6e-07 58.2 89 37.1
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 8.6e-07 58.2 89 37.1
ClCG06G013380 Citrullus lanatus HOM05D015664 ORTHO05D008524 1.1e-06 57.8 82 41.5
Medtr3g072360 Medicago truncatula HOM05D002277 ORTHO05D001770 1.1e-06 57.8 64 43.8
QL02p097844 Quercus lobata HOM05D007262 ORTHO05D008524 1.1e-06 57.8 76 43.4
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 1.1e-06 57.8 158 27.8
CDE04G2385 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 1.5e-06 57.4 85 36.5
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 1.5e-06 57.4 71 45.1
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.5e-06 57.4 71 42.3
HanXRQChr11g0337191 Helianthus annuus HOM05D002277 ORTHO05D001770 1.5e-06 57.4 83 37.3
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 1.5e-06 57.4 86 41.9
PSO384G4841 Papaver somniferum HOM05D002277 ORTHO05D001770 1.5e-06 57.4 82 36.6
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.5e-06 57.4 74 37.8
Psat5g132120 Pisum sativum HOM05D002277 ORTHO05D001770 1.5e-06 57.4 64 43.8
Sabra18G0078900 Salix brachista HOM05D007262 ORTHO05D008524 1.5e-06 57.4 82 40.2
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 1.9e-06 57.0 64 45.3
Cc06_g00560 Coffea canephora HOM05D002277 ORTHO05D001770 1.9e-06 57.0 84 39.3
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 1.9e-06 57.0 74 39.2
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.9e-06 57.0 68 42.6
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.9e-06 57.0 76 39.5
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 1.9e-06 57.0 77 39.0
VMungo1383G0121 Vigna mungo HOM05D002277 ORTHO05D001770 1.9e-06 57.0 76 39.5
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 2.5e-06 56.6 71 39.4
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 2.5e-06 56.6 62 46.8
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 2.5e-06 56.6 83 39.8
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 3.3e-06 56.2 75 38.7
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 3.3e-06 56.2 65 46.2
PGR044G1930 Punica granatum HOM05D002277 ORTHO05D001770 3.3e-06 56.2 76 42.1
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 3.3e-06 56.2 97 38.1
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 4.3e-06 55.8 70 40.0
TPR.G20193 Trifolium pratense HOM05D002277 ORTHO05D001770 4.3e-06 55.8 64 43.8
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 4.3e-06 55.8 111 31.5
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 5.6e-06 55.5 61 47.5
DCAR_017972 Daucus carota HOM05D007262 ORTHO05D008524 5.6e-06 55.5 55 54.5
Lalb_Chr08g0231311 Lupinus albus HOM05D002277 ORTHO05D001770 5.6e-06 55.5 62 45.2
Sed0025640 Sechium edule HOM05D015664 ORTHO05D008524 5.6e-06 55.5 80 40.0
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 7.3e-06 55.1 52 53.8
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 7.3e-06 55.1 68 48.5
BcaC01g05398 Brassica carinata HOM05D002277 ORTHO05D001770 7.3e-06 55.1 69 42.0
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.3e-06 55.1 75 38.7
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.3e-06 55.1 90 35.6
Oeu024724.1 Olea europaea HOM05D002277 ORTHO05D001770 7.3e-06 55.1 71 39.4
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 7.3e-06 55.1 77 44.2
AT5G01790 Arabidopsis thaliana HOM05D010646 ORTHO05D001770 9.5e-06 54.7 88 36.4
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 9.5e-06 54.7 90 35.6


User provided reference genes

Program Settings