Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_37709 Corchorus olitorius HOM05D007385 ORTHO05D009349 3.6e-177 624.8 308 100.0
COL.COLO4_07677 Corchorus olitorius HOM05D007385 ORTHO05D009349 1.0e-139 500.4 445 62.5
Thecc.04G178800 Theobroma cacao HOM05D007385 ORTHO05D009349 2.1e-113 412.9 437 53.3
Gorai.011G295100 Gossypium raimondii HOM05D007385 ORTHO05D009349 2.4e-101 372.9 437 49.2
Duzib212G0687 Durio zibethinus HOM05D007385 ORTHO05D009349 2.5e-98 362.8 437 48.7
Gohir.D10G254100 Gossypium hirsutum HOM05D007385 ORTHO05D009349 1.2e-92 344.0 270 63.7
Gohir.A10G242100 Gossypium hirsutum HOM05D007385 ORTHO05D009349 6.0e-92 341.7 270 63.3
QL10p019987 Quercus lobata HOM05D007385 ORTHO05D009349 6.7e-91 338.2 289 59.2
Cfa019356 Carpinus fangiana HOM05D007385 ORTHO05D009349 2.8e-89 332.8 312 56.1
Haze_07747 Corylus avellana HOM05D007385 ORTHO05D009349 9.0e-88 327.8 312 55.8
CSS0026709 Camellia sinensis var. sinensis HOM05D007385 ORTHO05D009349 2.0e-87 326.6 301 56.5
Ciclev10020129m.g Citrus clementina HOM05D007385 ORTHO05D009349 1.2e-84 317.4 290 57.2
Potri.018G051600 Populus trichocarpa HOM05D007385 ORTHO05D009349 2.1e-84 316.6 291 55.7
CiPaw.11G055800 Carya illinoinensis HOM05D007385 ORTHO05D009349 3.5e-84 315.8 287 55.7
FAN13G1154 Fragaria x ananassa HOM05D007385 ORTHO05D009349 3.0e-83 312.8 289 55.7
FvH4_5g13630 Fragaria vesca HOM05D007385 ORTHO05D009349 2.5e-82 309.7 289 55.0
RcHm_v2.0_Chr7g0183331 Rosa chinensis HOM05D007385 ORTHO05D009349 2.5e-82 309.7 289 55.4
FAN18G0626 Fragaria x ananassa HOM05D007385 ORTHO05D009349 7.4e-82 308.1 289 55.0
Rhsim02G0022600 Rhododendron simsii HOM05D007385 ORTHO05D009349 9.7e-82 307.8 304 53.3
Atru.chr9.516 Acer truncatum HOM05D007385 ORTHO05D009349 1.3e-81 307.4 382 46.1
Cpa.g.sc94.76 Carica papaya HOM05D007385 ORTHO05D009349 1.3e-81 307.4 291 54.6
Sabra18G0048200 Salix brachista HOM05D007385 ORTHO05D009349 1.3e-81 307.4 291 54.6
AL2G34030 Arabidopsis lyrata HOM05D007385 ORTHO05D009349 8.2e-81 304.7 289 52.2
Lalb_Chr11g0068081 Lupinus albus HOM05D007385 ORTHO05D009349 8.2e-81 304.7 293 54.6
Dinv22764 Davidia involucrata HOM05D007385 ORTHO05D009349 5.3e-80 302.0 301 51.8
EL10Ac5g11161 Beta vulgaris HOM05D007385 ORTHO05D009349 9.0e-80 301.2 290 49.7
TAR626G0510 Trochodendron aralioides HOM05D007385 ORTHO05D009349 9.0e-80 301.2 286 53.1
Aa31LG4G4430 Aethionema arabicum HOM05D007385 ORTHO05D009349 1.2e-79 300.8 292 50.0
BcaC08g46845 Brassica carinata HOM05D007385 ORTHO05D009349 2.6e-79 299.7 289 50.5
Medtr2g061450 Medicago truncatula HOM05D007385 ORTHO05D009349 7.7e-79 298.1 292 51.0
Thhalv10018549m.g Eutrema salsugineum HOM05D007385 ORTHO05D009349 1.0e-78 297.7 289 50.9
AT1G74120 Arabidopsis thaliana HOM05D007385 ORTHO05D009349 1.3e-78 297.4 286 52.1
Lj5E134T0 Lonicera japonica HOM05D007385 ORTHO05D009349 3.8e-78 295.8 301 51.5
Prupe.5G207400 Prunus persica HOM05D007385 ORTHO05D009349 8.5e-78 294.7 289 51.6
Sp5g29350 Schrenkiella parvula HOM05D007385 ORTHO05D009349 8.5e-78 294.7 289 49.8
Psat1g128320 Pisum sativum HOM05D007385 ORTHO05D009349 1.1e-77 294.3 289 51.2
Ah.01g002510 Amaranthus hybridus HOM05D007385 ORTHO05D009349 1.9e-77 293.5 289 49.1
Manes.14G087500 Manihot esculenta HOM05D007385 ORTHO05D009349 1.9e-77 293.5 291 51.2
CARHR067280 Cardamine hirsuta HOM05D007385 ORTHO05D009349 4.2e-77 292.4 286 50.3
Carub.0002s2092 Capsella rubella HOM05D007385 ORTHO05D009349 5.5e-77 292.0 289 50.2
AUR62039653 Chenopodium quinoa HOM05D007385 ORTHO05D009349 7.2e-77 291.6 290 48.3
MSTRG.11333 Avicennia marina HOM05D007385 ORTHO05D009349 1.2e-76 290.8 289 50.9
Hma1.2p1_0322F.1_g124600 Hydrangea macrophylla HOM05D007385 ORTHO05D009349 1.2e-76 290.8 289 51.9
C06p48270 Brassica napus HOM05D007385 ORTHO05D009349 1.6e-76 290.4 290 49.3
MBI16_g10855_MAGBIO Magnolia biondii HOM05D007385 ORTHO05D009349 2.1e-76 290.0 285 50.2
Aqoxy3G03653 Aquilegia oxysepala HOM05D007385 ORTHO05D009349 2.7e-76 289.7 290 49.3
AUR62021530 Chenopodium quinoa HOM05D007385 ORTHO05D009349 2.7e-76 289.7 290 49.0
Migut.L01399 Erythranthe guttata HOM05D007385 ORTHO05D009349 2.7e-76 289.7 297 50.2
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 2.7e-76 289.7 295 51.2
Phvul.009G202900 Phaseolus vulgaris HOM05D007385 ORTHO05D009349 4.6e-76 288.9 290 52.1
A07p40010 Brassica napus HOM05D007385 ORTHO05D009349 6.1e-76 288.5 290 48.6
BraA07t31546Z Brassica rapa HOM05D007385 ORTHO05D009349 6.1e-76 288.5 290 48.6
Ca_29560_v3 Cicer arietinum L. HOM05D007385 ORTHO05D009349 7.9e-76 288.1 285 52.3
Sed0022204 Sechium edule HOM05D007385 ORTHO05D009349 7.9e-76 288.1 301 50.2
GSVIVG01008120001 Vitis vinifera HOM05D007385 ORTHO05D009349 7.9e-76 288.1 289 52.2
BcaC08g46812 Brassica carinata HOM05D007385 ORTHO05D009349 1.4e-75 287.3 290 49.3
BolC6t39859H Brassica oleracea HOM05D007385 ORTHO05D009349 1.4e-75 287.3 290 49.3
MD14G1214100 Malus domestica HOM05D007385 ORTHO05D009349 1.8e-75 287.0 289 50.9
PGR083G1273 Punica granatum HOM05D007385 ORTHO05D009349 3.9e-75 285.8 290 50.7
MELO3C002869.2 Cucumis melo HOM05D007385 ORTHO05D009349 8.8e-75 284.6 301 49.5
THA.LOC104812111 Tarenaya hassleriana HOM05D007385 ORTHO05D009349 8.8e-75 284.6 290 49.0
HanXRQChr08g0230411 Helianthus annuus HOM05D007385 ORTHO05D009349 1.1e-74 284.3 290 50.3
Sc04g0004300 Simmondsia chinensis HOM05D007385 ORTHO05D009349 1.5e-74 283.9 286 47.9
Lsat_1_v5_gn_5_22980 Lactuca sativa HOM05D007385 ORTHO05D009349 2.5e-74 283.1 289 48.4
CANSAT78G0918 Cannabis sativa HOM05D007385 ORTHO05D009349 3.3e-74 282.7 289 50.9
Lsat_1_v5_gn_5_22940 Lactuca sativa HOM05D007385 ORTHO05D009349 1.3e-73 280.8 289 48.1
VMungo1309G0993 Vigna mungo HOM05D007385 ORTHO05D009349 2.2e-73 280.0 290 50.0
CsaV3_1G037600 Cucumis sativus L. HOM05D007385 ORTHO05D009349 4.8e-73 278.9 301 49.5
ClCG03G008530 Citrullus lanatus HOM05D007385 ORTHO05D009349 8.2e-73 278.1 301 49.2
Glyma.04G160400 Glycine max HOM05D007385 ORTHO05D009349 3.1e-72 276.2 290 50.3
arahy.Tifrunner.gnm1.ann1.AV1VK7 Arachis hypogaea HOM05D007385 ORTHO05D009349 6.9e-72 275.0 291 49.1
SalBow5G4421 Salvia bowleyana HOM05D007385 ORTHO05D009349 6.9e-72 275.0 284 47.9
Actinidia04811 Actinidia chinensis HOM05D007385 ORTHO05D009349 9.1e-72 274.6 301 50.5
arahy.Tifrunner.gnm1.ann1.9FHV3M Arachis hypogaea HOM05D007385 ORTHO05D009349 5.9e-71 271.9 288 48.3
FAN08G0404 Fragaria x ananassa HOM05D007385 ORTHO05D009349 5.9e-71 271.9 289 50.5
Lj2g0011212 Lotus japonicus HOM05D007385 ORTHO05D009349 2.7e-68 263.1 292 46.9
Peaxi162Scf00251g00117 Petunia axillaris HOM05D007385 ORTHO05D009349 2.7e-68 263.1 286 44.8
SHI17456 Sapria himalayana HOM05D007385 ORTHO05D009349 6.7e-67 258.5 287 45.3
Nitab4.5_0000309g0300 Nicotiana tabacum HOM05D007385 ORTHO05D009349 3.5e-63 246.1 286 43.4
CAN.G681.4 Capsicum annuum HOM05D007385 ORTHO05D009349 1.9e-61 240.4 286 41.6
PGSC0003DMG400016606 Solanum tuberosum HOM05D007385 ORTHO05D009349 2.5e-61 240.0 286 42.3
SGA_v2.0_scaffold28G11738 Striga asiatica HOM05D007385 ORTHO05D009349 4.2e-61 239.2 292 41.8
SGA_v2.0_scaffold733G53530 Striga asiatica HOM05D007385 ORTHO05D009349 4.2e-61 239.2 292 41.8
Sopen09g035860 Solanum pennellii HOM05D007385 ORTHO05D009349 7.2e-61 238.4 286 42.7
Solyc09g097920.3 Solanum lycopersicum HOM05D007385 ORTHO05D009349 2.7e-60 236.5 286 42.3
ATR0680G420 Amborella trichopoda HOM05D007385 ORTHO05D009349 6.3e-57 225.3 286 39.9
ECA246G0832 Erigeron canadensis HOM05D007385 ORTHO05D009349 1.3e-54 217.6 217 50.7
HPP92_019471 Vanilla planifolia HOM05D007385 ORTHO05D009349 1.7e-49 200.7 292 38.4
Nitab4.5_0001689g0090 Nicotiana tabacum HOM05D007385 ORTHO05D009349 4.8e-49 199.1 215 43.7
BcaC08g46816 Brassica carinata HOM05D007385 ORTHO05D009349 1.8e-40 170.6 150 54.7
Oeu014423.1 Olea europaea HOM05D007385 ORTHO05D009349 9.5e-37 158.3 319 35.4
Zm00001eb136360 Zea mays HOM05D007385 ORTHO05D009349 2.6e-34 150.2 231 35.9
Rhsim08G0143700 Rhododendron simsii HOM05D007385 ORTHO05D009349 2.0e-31 140.6 150 48.7
Os12g0490000 Oryza sativa ssp. japonica HOM05D007385 ORTHO05D009349 4.5e-31 139.4 232 33.6
Nitab4.5_0000309g0070 Nicotiana tabacum HOM05D007385 ORTHO05D009349 2.9e-30 136.7 214 35.5
Migut.H01127 Erythranthe guttata HOM05D007385 ORTHO05D009349 4.7e-28 129.4 152 46.7
Migut.H01126 Erythranthe guttata HOM05D007385 ORTHO05D009349 3.1e-27 126.7 189 39.7
Medtr2g060620 Medicago truncatula HOM05D007385 ORTHO05D009349 7.5e-26 122.1 102 59.8
Migut.H01128 Erythranthe guttata HOM05D007385 ORTHO05D009349 1.2e-23 114.8 160 41.2
CANSAT78G2199 Cannabis sativa HOM05D007385 ORTHO05D009349 1.9e-16 90.9 98 51.0
Actinidia10453 Actinidia chinensis HOM05D007385 ORTHO05D009349 4.1e-16 89.7 78 55.1
Migut.H01129 Erythranthe guttata HOM05D007385 ORTHO05D009349 1.6e-07 61.2 99 35.4
Aa31LG4G4450 Aethionema arabicum HOM05D007385 ORTHO05D009349 1.7e-06 57.8 119 34.5


User provided reference genes

Program Settings