Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 1.9e-48 195.7 108 100.0
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 2.2e-36 155.6 97 88.7
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 9.0e-35 150.2 98 84.7
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 1.2e-34 149.8 99 84.8
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.2e-34 149.8 108 82.4
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.2e-34 149.8 108 82.4
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 1.0e-33 146.7 108 81.5
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 9.7e-29 130.2 109 74.3
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 6.9e-27 124.0 110 71.8
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 4.5e-26 121.3 110 69.1
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 1.0e-25 120.2 110 69.1
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.9e-25 118.6 110 68.2
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 5.5e-24 114.4 110 65.5
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 7.2e-24 114.0 111 65.8
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 9.4e-24 113.6 108 64.8
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.6e-23 112.8 109 69.7
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 7.9e-23 110.5 108 67.6
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 7.9e-23 110.5 111 65.8
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 1.4e-22 109.8 111 67.6
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 5.1e-22 107.8 109 61.5
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 6.7e-22 107.5 112 66.1
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 8.8e-22 107.1 111 64.0
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 8.8e-22 107.1 112 62.5
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.5e-21 106.3 109 64.2
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 1.5e-21 106.3 110 66.4
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 2.6e-21 105.5 110 60.9
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 3.3e-21 105.1 110 61.8
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 5.7e-21 104.4 112 64.3
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 5.7e-21 104.4 112 64.3
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 7.4e-21 104.0 112 64.3
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 1.3e-20 103.2 109 62.4
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 1.3e-20 103.2 109 62.4
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.2e-20 102.4 109 59.6
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 2.2e-20 102.4 100 65.0
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 3.7e-20 101.7 104 68.3
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 4.8e-20 101.3 109 59.6
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 4.8e-20 101.3 110 61.8
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.1e-19 100.1 109 59.6
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.1e-19 100.1 109 58.7
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 1.4e-19 99.8 101 66.3
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 3.1e-19 98.6 103 64.1
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 5.3e-19 97.8 109 59.6
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 9.1e-19 97.1 110 60.0
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 9.1e-19 97.1 110 60.0
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 1.2e-18 96.7 111 62.2
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 1.2e-18 96.7 111 62.2
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 1.2e-18 96.7 108 56.5
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 2.0e-18 95.9 99 65.7
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 2.6e-18 95.5 110 59.1
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 4.5e-18 94.7 117 57.3
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 4.5e-18 94.7 108 57.4
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 7.7e-18 94.0 98 67.3
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 7.7e-18 94.0 99 60.6
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 1.0e-17 93.6 109 57.8
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 1.3e-17 93.2 100 64.0
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.7e-17 92.8 99 60.6
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 1.7e-17 92.8 102 59.8
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 2.9e-17 92.0 99 62.6
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 5.0e-17 91.3 103 63.1
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 5.0e-17 91.3 102 63.7
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 6.5e-17 90.9 104 64.4
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 8.5e-17 90.5 101 59.4
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 8.5e-17 90.5 92 67.4
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 8.5e-17 90.5 107 53.3
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 8.5e-17 90.5 110 56.4
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 8.5e-17 90.5 109 56.9
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 1.1e-16 90.1 98 63.3
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 1.4e-16 89.7 99 62.6
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 3.2e-16 88.6 101 62.4
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 9.4e-16 87.0 96 64.6
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 1.2e-15 86.7 98 58.2
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 1.2e-15 86.7 97 57.7
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 2.1e-15 85.9 96 63.5
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 2.1e-15 85.9 109 56.0
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 2.7e-15 85.5 98 65.3
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 2.7e-15 85.5 100 58.0
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 2.7e-15 85.5 99 60.6
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 3.6e-15 85.1 101 56.4
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 6.1e-15 84.3 98 60.2
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 8.0e-15 84.0 101 62.4
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 8.0e-15 84.0 100 59.0
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 8.0e-15 84.0 98 61.2
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 1.4e-14 83.2 105 61.0
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 1.8e-14 82.8 98 57.1
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 2.3e-14 82.4 110 54.5
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 2.3e-14 82.4 98 58.2
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 2.3e-14 82.4 99 55.6
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 5.2e-14 81.3 77 67.5
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 6.7e-14 80.9 89 64.0
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 6.7e-14 80.9 89 64.0
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 2.0e-13 79.3 100 60.0
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 2.0e-13 79.3 101 56.4
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 2.0e-13 79.3 109 52.3
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 3.3e-13 78.6 103 57.3
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 9.7e-13 77.0 98 57.1
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 9.7e-13 77.0 100 55.0
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 1.1e-11 73.6 98 55.1
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 4.5e-10 68.2 106 45.3
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 5.9e-10 67.8 101 49.5
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 5.9e-10 67.8 94 48.9
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 5.9e-10 67.8 83 54.2
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.3e-09 66.6 83 51.8
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 1.7e-09 66.2 97 47.4
Os02g0658300 Oryza sativa ssp. japonica HOM05D006762 ORTHO05D003505 1.7e-09 66.2 110 48.2
arahy.Tifrunner.gnm1.ann1.QP3VPD Arachis hypogaea HOM05D006762 ORTHO05D003505 2.2e-09 65.9 101 51.5
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 3.8e-09 65.1 107 51.4
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.1e-08 63.5 83 49.4
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 1.5e-08 63.2 51 64.7
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 1.5e-08 63.2 75 54.7
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.9e-08 62.8 109 48.6
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 2.5e-08 62.4 54 64.8
arahy.Tifrunner.gnm1.ann1.8JK4ZI Arachis hypogaea HOM05D006762 ORTHO05D003505 2.5e-08 62.4 99 50.5
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 2.5e-08 62.4 46 69.6
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 2.5e-08 62.4 46 69.6
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 4.2e-08 61.6 85 50.6
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 5.5e-08 61.2 94 45.7
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 5.5e-08 61.2 83 48.2
Glyma.03G118000 Glycine max HOM05D006762 ORTHO05D022366 7.2e-08 60.8 100 48.0
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 7.2e-08 60.8 77 51.9
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 9.4e-08 60.5 109 47.7
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 9.4e-08 60.5 51 60.8
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 9.4e-08 60.5 50 64.0
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 2.1e-07 59.3 86 46.5
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 2.7e-07 58.9 82 48.8
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.7e-07 58.9 84 48.8
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 3.6e-07 58.5 88 47.7
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 3.6e-07 58.5 82 47.6
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 3.6e-07 58.5 99 46.5
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 4.7e-07 58.2 103 46.6
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 4.7e-07 58.2 97 48.5
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 4.7e-07 58.2 108 48.1
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 4.7e-07 58.2 65 52.3
HPP92_025465 Vanilla planifolia HOM05D006762 ORTHO05D003505 6.1e-07 57.8 102 49.0
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 8.0e-07 57.4 103 42.7
arahy.Tifrunner.gnm1.ann1.D6ADVN Arachis hypogaea HOM05D006762 ORTHO05D003505 1.0e-06 57.0 99 47.5
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 1.0e-06 57.0 94 43.6
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 1.0e-06 57.0 48 60.4
Dinv44108 Davidia involucrata HOM05D006762 ORTHO05D003505 1.0e-06 57.0 69 58.0
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 1.0e-06 57.0 85 44.7
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 1.0e-06 57.0 101 42.6
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 1.4e-06 56.6 94 45.7
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 1.4e-06 56.6 98 49.0
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.4e-06 56.6 94 45.7
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 1.4e-06 56.6 93 44.1
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 1.4e-06 56.6 75 50.7
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 1.4e-06 56.6 86 43.0
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 1.4e-06 56.6 103 41.7
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 1.8e-06 56.2 59 54.2
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 1.8e-06 56.2 48 60.4
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 1.8e-06 56.2 100 48.0
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 1.8e-06 56.2 108 40.7
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 2.3e-06 55.8 93 41.9
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 2.3e-06 55.8 102 43.1
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 2.3e-06 55.8 110 46.4
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 3.0e-06 55.5 94 44.7
Ca_23117_v3 Cicer arietinum L. HOM05D006762 ORTHO05D022366 3.0e-06 55.5 59 57.6
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 3.0e-06 55.5 83 47.0
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 3.0e-06 55.5 47 63.8
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.0e-06 55.5 72 50.0
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 3.0e-06 55.5 108 44.4
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 3.0e-06 55.5 97 44.3
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 4.0e-06 55.1 103 44.7
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 4.0e-06 55.1 101 44.6
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 4.0e-06 55.1 90 47.8
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 5.2e-06 54.7 108 44.4
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.2e-06 54.7 83 47.0
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 5.2e-06 54.7 83 44.6
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 6.7e-06 54.3 108 43.5
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 6.7e-06 54.3 108 43.5
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 6.7e-06 54.3 108 43.5
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 6.7e-06 54.3 108 44.4
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 6.7e-06 54.3 103 47.6
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 6.7e-06 54.3 62 53.2
Phvul.010G056600 Phaseolus vulgaris HOM05D006762 ORTHO05D022366 6.7e-06 54.3 45 62.2
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 6.7e-06 54.3 100 44.0
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 8.8e-06 53.9 110 41.8
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 8.8e-06 53.9 62 53.2


User provided reference genes

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