Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_37161 Corchorus olitorius HOM05D003141 ORTHO05D003633 2.7e-217 758.4 397 100.0
Thecc.03G249800 Theobroma cacao HOM05D003141 ORTHO05D003633 2.5e-143 512.7 328 84.5
Duzib205G1689 Durio zibethinus HOM05D003141 ORTHO05D003633 6.1e-129 464.9 328 79.0
Duzib068G0714 Durio zibethinus HOM05D003141 ORTHO05D003633 7.4e-127 458.0 328 76.8
Gohir.A12G216300 Gossypium hirsutum HOM05D003141 ORTHO05D003633 4.1e-125 452.2 328 75.0
Gorai.008G234500 Gossypium raimondii HOM05D003141 ORTHO05D003633 5.0e-123 445.3 328 74.1
Gorai.004G197800 Gossypium raimondii HOM05D003141 ORTHO05D003633 1.9e-122 443.4 328 74.1
Gohir.D08G187900 Gossypium hirsutum HOM05D003141 ORTHO05D003633 6.8e-120 434.9 335 72.2
Gohir.A08G169600 Gossypium hirsutum HOM05D003141 ORTHO05D003633 2.6e-119 433.0 328 73.2
Cpa.g.sc29.172 Carica papaya HOM05D003141 ORTHO05D003633 2.2e-110 403.3 328 67.7
QL12p011944 Quercus lobata HOM05D003141 ORTHO05D003633 2.7e-108 396.4 329 64.1
Atru.chr9.1295 Acer truncatum HOM05D003141 ORTHO05D003633 2.3e-107 393.3 328 66.2
Haze_07903 Corylus avellana HOM05D003141 ORTHO05D003633 3.8e-107 392.5 328 65.9
Gohir.A11G027000 Gossypium hirsutum HOM05D003141 ORTHO05D003633 3.8e-107 392.5 328 69.5
Ciclev10018443m.g Citrus clementina HOM05D003141 ORTHO05D003633 9.5e-106 387.9 333 65.5
TWI81G0497 Tripterygium wilfordii HOM05D003141 ORTHO05D003633 2.1e-105 386.7 323 66.6
Gorai.007G028500 Gossypium raimondii HOM05D003141 ORTHO05D003633 8.0e-105 384.8 328 68.3
Gohir.D11G026200 Gossypium hirsutum HOM05D003141 ORTHO05D003633 1.5e-103 380.6 328 68.0
CiPaw.12G051500 Carya illinoinensis HOM05D003141 ORTHO05D003633 9.8e-103 377.9 324 64.8
Manes.01G081400 Manihot esculenta HOM05D003141 ORTHO05D003633 2.4e-101 373.2 325 63.7
Dinv21645 Davidia involucrata HOM05D003141 ORTHO05D003633 1.2e-100 370.9 320 63.4
CSS0046148 Camellia sinensis var. sinensis HOM05D003141 ORTHO05D003633 1.3e-99 367.5 328 62.2
CiPaw.11G080100 Carya illinoinensis HOM05D003141 ORTHO05D003633 5.0e-99 365.5 328 61.9
CSS0047611 Camellia sinensis var. sinensis HOM05D003141 ORTHO05D003633 7.3e-98 361.7 333 62.8
TWI15G0894 Tripterygium wilfordii HOM05D003141 ORTHO05D003633 8.0e-97 358.2 323 63.5
GSVIVG01004716001 Vitis vinifera HOM05D003141 ORTHO05D003633 1.8e-96 357.1 331 61.0
Potri.003G077600 Populus trichocarpa HOM05D003141 ORTHO05D003633 5.2e-96 355.5 327 63.3
Potri.001G157300 Populus trichocarpa HOM05D003141 ORTHO05D003633 6.8e-96 355.1 328 61.6
vmacro14077 Vaccinium macrocarpon HOM05D003141 ORTHO05D003633 8.3e-94 348.2 338 59.5
Prupe.5G068000 Prunus persica HOM05D003141 ORTHO05D003633 1.9e-93 347.1 328 57.3
Manes.02G040600 Manihot esculenta HOM05D003141 ORTHO05D003633 4.6e-92 342.4 329 59.9
Dinv39155 Davidia involucrata HOM05D003141 ORTHO05D003633 1.9e-90 337.0 299 61.5
MD06G1057100 Malus domestica HOM05D003141 ORTHO05D003633 1.6e-89 334.0 331 58.3
TAR375G1127 Trochodendron aralioides HOM05D003141 ORTHO05D003633 1.6e-89 334.0 335 57.9
MD04G1062800 Malus domestica HOM05D003141 ORTHO05D003633 3.1e-88 329.7 328 57.0
Cc08_g12310 Coffea canephora HOM05D003141 ORTHO05D003633 1.3e-86 324.3 329 57.8
Sabra03G0047900 Salix brachista HOM05D003141 ORTHO05D003633 1.9e-85 320.5 299 63.2
TAR636G0976 Trochodendron aralioides HOM05D003141 ORTHO05D003633 9.2e-85 318.2 335 56.4
TAR629G2174 Trochodendron aralioides HOM05D003141 ORTHO05D003633 2.7e-84 316.6 343 56.0
TAR374G0926 Trochodendron aralioides HOM05D003141 ORTHO05D003633 9.5e-82 308.1 336 53.9
Glyma.05G060300 Glycine max HOM05D003141 ORTHO05D003633 3.6e-81 306.2 334 55.7
TAR629G2689 Trochodendron aralioides HOM05D003141 ORTHO05D003633 4.0e-80 302.8 354 53.4
FAN18G0989 Fragaria x ananassa HOM05D003141 ORTHO05D003633 7.6e-79 298.5 329 54.4
FvH4_5g19090 Fragaria vesca HOM05D003141 ORTHO05D003633 2.2e-78 297.0 329 54.1
RcHm_v2.0_Chr7g0203541 Rosa chinensis HOM05D003141 ORTHO05D003633 1.9e-77 293.9 332 53.6
FAN13G0222 Fragaria x ananassa HOM05D003141 ORTHO05D003633 3.2e-77 293.1 330 53.3
Sabra01G0134100 Salix brachista HOM05D003141 ORTHO05D003633 5.4e-77 292.4 298 58.1
FAN04G0074 Fragaria x ananassa HOM05D003141 ORTHO05D003633 7.1e-77 292.0 330 53.6
Nn1g00964 Nelumbo nucifera HOM05D003141 ORTHO05D003633 1.3e-75 287.7 340 52.4
vmacro00195 Vaccinium macrocarpon HOM05D003141 ORTHO05D003633 1.5e-74 284.3 326 53.7
Eucgr.D02089 Eucalyptus grandis HOM05D003141 ORTHO05D003633 3.3e-74 283.1 327 53.5
vmacro10681 Vaccinium macrocarpon HOM05D003141 ORTHO05D003633 4.7e-73 279.3 330 52.7
VMungo0251G3034 Vigna mungo HOM05D003141 ORTHO05D003633 4.7e-73 279.3 325 52.6
vmacro22443 Vaccinium macrocarpon HOM05D003141 ORTHO05D003633 1.8e-72 277.3 330 52.4
Lalb_Chr05g0214411 Lupinus albus HOM05D003141 ORTHO05D003633 2.4e-72 276.9 329 52.0
CsaV3_3G002610 Cucumis sativus L. HOM05D003141 ORTHO05D003633 1.2e-71 274.6 324 51.2
arahy.Tifrunner.gnm1.ann1.ZLH3PG Arachis hypogaea HOM05D003141 ORTHO05D003633 2.0e-71 273.9 330 53.6
Hma1.2p1_0316F.1_g123020 Hydrangea macrophylla HOM05D003141 ORTHO05D003633 2.0e-71 273.9 300 54.7
arahy.Tifrunner.gnm1.ann1.YK7683 Arachis hypogaea HOM05D003141 ORTHO05D003633 9.9e-71 271.6 330 52.7
Phvul.003G221300 Phaseolus vulgaris HOM05D003141 ORTHO05D003633 2.9e-70 270.0 334 50.9
MELO3C013931.2 Cucumis melo HOM05D003141 ORTHO05D003633 3.8e-70 269.6 326 50.3
Nn6g33922 Nelumbo nucifera HOM05D003141 ORTHO05D003633 3.8e-70 269.6 331 49.8
PGR042G4011 Punica granatum HOM05D003141 ORTHO05D003633 8.4e-70 268.5 334 50.6
MSTRG.12108 Avicennia marina HOM05D003141 ORTHO05D003633 1.1e-69 268.1 330 51.8
ClCG10G002580 Citrullus lanatus HOM05D003141 ORTHO05D003633 1.1e-69 268.1 324 50.9
Medtr5g012780 Medicago truncatula HOM05D003141 ORTHO05D003633 1.9e-69 267.3 331 51.7
Glyma.11G033600 Glycine max HOM05D003141 ORTHO05D003633 3.2e-69 266.5 324 51.5
Phvul.002G057800 Phaseolus vulgaris HOM05D003141 ORTHO05D003633 4.2e-69 266.2 320 49.7
Glyma.01G208600 Glycine max HOM05D003141 ORTHO05D003633 7.1e-69 265.4 323 51.4
Migut.A01111 Erythranthe guttata HOM05D003141 ORTHO05D003633 9.3e-69 265.0 333 51.7
Ca_24583_v3 Cicer arietinum L. HOM05D003141 ORTHO05D003633 1.2e-68 264.6 331 51.7
DCAR_006836 Daucus carota HOM05D003141 ORTHO05D003633 2.1e-68 263.8 326 52.1
CANSAT21G0191 Cannabis sativa HOM05D003141 ORTHO05D003633 3.9e-67 259.6 329 49.8
SalBow6G4258 Salvia bowleyana HOM05D003141 ORTHO05D003633 3.9e-67 259.6 326 50.0
TPR.G18122 Trifolium pratense HOM05D003141 ORTHO05D003633 1.1e-66 258.1 329 50.2
MBI04_g09516_MAGBIO Magnolia biondii HOM05D003141 ORTHO05D003633 1.5e-66 257.7 336 50.0
Hund14553 Selenicereus undatus HOM05D003141 ORTHO05D003633 1.5e-66 257.7 331 48.3
THA.LOC104806728 Tarenaya hassleriana HOM05D003141 ORTHO05D003633 2.5e-66 256.9 333 48.9
FAN08G3437 Fragaria x ananassa HOM05D003141 ORTHO05D003633 2.8e-65 253.4 304 51.0
VMungo1215G1426 Vigna mungo HOM05D003141 ORTHO05D003633 3.6e-65 253.1 320 49.1
Lj4g0011011 Lotus japonicus HOM05D003141 ORTHO05D003633 8.1e-65 251.9 332 49.4
Aa31LG6G80 Aethionema arabicum HOM05D003141 ORTHO05D003633 4.0e-64 249.6 334 48.2
Lj2g0024874 Lotus japonicus HOM05D003141 ORTHO05D003633 1.2e-63 248.1 328 52.4
Sed0019628 Sechium edule HOM05D003141 ORTHO05D003633 1.2e-63 248.1 324 49.4
Ca_21973_v3 Cicer arietinum L. HOM05D003141 ORTHO05D003633 3.4e-63 246.5 333 51.7
Medtr4g100800 Medicago truncatula HOM05D003141 ORTHO05D003633 4.4e-63 246.1 332 48.2
Sc07g0009290 Simmondsia chinensis HOM05D003141 ORTHO05D003633 9.9e-63 245.0 330 49.1
MSTRG.25519 Avicennia marina HOM05D003141 ORTHO05D003633 1.1e-61 241.5 330 48.8
Ah.12g053640 Amaranthus hybridus HOM05D003141 ORTHO05D003633 1.9e-61 240.7 335 45.4
Carub.0007s2408 Capsella rubella HOM05D003141 ORTHO05D003633 7.1e-61 238.8 331 46.8
COL.COLO4_17037 Corchorus olitorius HOM05D003141 ORTHO05D003633 2.1e-60 237.3 278 54.0
Lj8A264T56 Lonicera japonica HOM05D003141 ORTHO05D003633 7.9e-60 235.3 336 48.2
AT4G17330 Arabidopsis thaliana HOM05D003141 ORTHO05D003633 1.3e-59 234.6 330 46.7
Sp7g16850 Schrenkiella parvula HOM05D003141 ORTHO05D003633 1.3e-59 234.6 330 45.2
TPR.G37647 Trifolium pratense HOM05D003141 ORTHO05D003633 6.6e-59 232.3 332 46.7
AUR62007092 Chenopodium quinoa HOM05D003141 ORTHO05D003633 3.3e-58 229.9 326 46.9
Thhalv10024186m.g Eutrema salsugineum HOM05D003141 ORTHO05D003633 4.3e-58 229.6 330 45.5
Psat4g072560 Pisum sativum HOM05D003141 ORTHO05D003633 2.8e-57 226.9 332 47.3
Oeu020432.4 Olea europaea HOM05D003141 ORTHO05D003633 6.2e-57 225.7 327 44.6
AL7G37390 Arabidopsis lyrata HOM05D003141 ORTHO05D003633 1.8e-56 224.2 330 46.1
Lalb_Chr09g0330011 Lupinus albus HOM05D003141 ORTHO05D003633 6.9e-56 222.2 328 47.0
Nitab4.5_0001381g0110 Nicotiana tabacum HOM05D003141 ORTHO05D003633 6.9e-56 222.2 327 47.4
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 9.0e-56 221.9 299 48.8
PGSC0003DMG400004819 Solanum tuberosum HOM05D003141 ORTHO05D003633 2.0e-55 220.7 331 47.1
Nitab4.5_0002289g0020 Nicotiana tabacum HOM05D003141 ORTHO05D003633 2.6e-55 220.3 328 46.6
Hund11601 Selenicereus undatus HOM05D003141 ORTHO05D003633 4.5e-55 219.5 328 44.5
Psat2g177640 Pisum sativum HOM05D003141 ORTHO05D003633 9.9e-55 218.4 331 48.3
EL10Ac5g12387 Beta vulgaris HOM05D003141 ORTHO05D003633 1.3e-54 218.0 308 44.8
AUR62019955 Chenopodium quinoa HOM05D003141 ORTHO05D003633 3.8e-54 216.5 325 45.2
CAN.G1058.41 Capsicum annuum HOM05D003141 ORTHO05D003633 1.1e-53 214.9 328 47.6
Lalb_Chr05g0221221 Lupinus albus HOM05D003141 ORTHO05D003633 5.4e-53 212.6 333 42.9
Solyc08g078530.4 Solanum lycopersicum HOM05D003141 ORTHO05D003633 7.1e-53 212.2 328 45.1
Sopen08g027010 Solanum pennellii HOM05D003141 ORTHO05D003633 2.1e-52 210.7 328 45.1
Sc22g0000930 Simmondsia chinensis HOM05D003141 ORTHO05D003633 2.7e-52 210.3 351 44.2
ECA233G3821 Erigeron canadensis HOM05D003141 ORTHO05D003633 3.0e-51 206.8 322 43.2
A08p13070 Brassica napus HOM05D003141 ORTHO05D003633 3.9e-51 206.5 330 41.8
BcaC06g33544 Brassica carinata HOM05D003141 ORTHO05D003633 1.5e-50 204.5 326 41.4
BcaC07g38061 Brassica carinata HOM05D003141 ORTHO05D003633 1.5e-50 204.5 329 41.6
BolC8t48454H Brassica oleracea HOM05D003141 ORTHO05D003633 1.5e-50 204.5 329 41.6
A08p13000 Brassica napus HOM05D003141 ORTHO05D003633 1.3e-49 201.4 333 40.5
BraA08t33289Z Brassica rapa HOM05D003141 ORTHO05D003633 3.7e-49 199.9 330 41.2
Aqoxy7G00802 Aquilegia oxysepala HOM05D003141 ORTHO05D003633 6.2e-49 199.1 350 38.9
Peaxi162Scf00209g00005 Petunia axillaris HOM05D003141 ORTHO05D003633 2.6e-47 193.7 384 42.4
DCAR_027770 Daucus carota HOM05D003141 ORTHO05D003633 1.7e-46 191.0 334 46.4
Oeu019602.2 Olea europaea HOM05D003141 ORTHO05D003633 1.7e-46 191.0 328 40.9
BcaNung00101 Brassica carinata HOM05D003141 ORTHO05D003633 2.2e-46 190.7 335 39.4
HanXRQChr16g0510701 Helianthus annuus HOM05D003141 ORTHO05D003633 1.1e-45 188.3 321 44.2
ATR0317G002 Amborella trichopoda HOM05D003141 ORTHO05D003633 1.4e-45 188.0 331 39.6
HanXRQChr03g0087821 Helianthus annuus HOM05D003141 ORTHO05D003633 2.5e-45 187.2 321 42.4
CDE02G1173 Ceratophyllum demersum HOM05D003141 ORTHO05D003633 7.9e-44 182.2 322 43.2
PSO170G6315 Papaver somniferum HOM05D003141 ORTHO05D003633 7.9e-44 182.2 337 41.5
SGA_v2.0_scaffold104G30161 Striga asiatica HOM05D003141 ORTHO05D003633 1.0e-43 181.8 303 43.2
PSO017G2158 Papaver somniferum HOM05D003141 ORTHO05D003633 1.3e-43 181.4 339 40.7
unitig_21.g20317 Utricularia gibba HOM05D003141 ORTHO05D003633 3.1e-40 170.2 320 41.9
Lj2C219G10 Lonicera japonica HOM05D003141 ORTHO05D003633 2.2e-38 164.1 327 39.1
ECA240G2052 Erigeron canadensis HOM05D003141 ORTHO05D003633 8.4e-38 162.2 328 39.9
SGA_v2.0_scaffold199G41175 Striga asiatica HOM05D003141 ORTHO05D003633 3.2e-37 160.2 300 37.3
HPP92_022419 Vanilla planifolia HOM05D003141 ORTHO05D003633 3.2e-37 160.2 345 36.8
Gohir.D12G218900 Gossypium hirsutum HOM05D003141 ORTHO05D003633 1.6e-36 157.9 101 75.2
CDE04G1375 Ceratophyllum demersum HOM05D003141 ORTHO05D003633 2.7e-36 157.1 324 38.6
Zm00001eb023270 Zea mays HOM05D003141 ORTHO05D003633 8.7e-35 152.1 353 37.4
HanXRQChr17g0549311 Helianthus annuus HOM05D003141 ORTHO05D003633 8.2e-33 145.6 329 39.8
Lsat_1_v5_gn_6_90740 Lactuca sativa HOM05D003141 ORTHO05D003633 1.8e-32 144.4 336 38.1
Os10g0559600 Oryza sativa ssp. japonica HOM05D003141 ORTHO05D003633 4.1e-32 143.3 343 37.9
unitig_744.g24473 Utricularia gibba HOM05D003141 ORTHO05D003633 3.8e-30 136.7 322 36.3
Actinidia14420 Actinidia chinensis HOM05D003141 ORTHO05D003633 5.5e-29 132.9 300 35.7
Zm00001eb391270 Zea mays HOM05D003141 ORTHO05D003633 2.7e-28 130.6 351 35.9
Actinidia28207 Actinidia chinensis HOM05D003141 ORTHO05D003633 3.1e-24 117.1 147 44.9
SEGI_19130 Sequoiadendron giganteum HOM05D003141 ORTHO05D003633 8.2e-17 92.4 160 38.1
Actinidia02141 Actinidia chinensis HOM05D003141 ORTHO05D003633 5.3e-16 89.7 132 48.5
BcaC07g38057 Brassica carinata HOM05D003141 ORTHO05D003633 2.0e-15 87.8 82 59.8
BcaC07g38056 Brassica carinata HOM05D003141 ORTHO05D003633 1.0e-14 85.5 164 34.1
ECA240G3943 Erigeron canadensis HOM05D003141 ORTHO05D003633 2.9e-14 84.0 141 42.6
SEGI_09106 Sequoiadendron giganteum HOM05D003141 ORTHO05D003633 1.0e-11 75.5 111 45.0
SHI20296 Sapria himalayana HOM05D003141 ORTHO05D003633 9.7e-10 68.9 124 40.3


User provided reference genes

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