Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 2.4e-237 825.1 412 100.0
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 1.1e-200 703.4 409 84.4
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 8.9e-200 700.3 412 83.7
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 2.0e-199 699.1 403 85.1
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 3.8e-190 668.3 410 80.0
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 4.9e-190 667.9 412 78.4
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 4.9e-190 667.9 412 78.9
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 2.7e-188 662.1 410 79.5
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.5e-186 656.4 410 78.0
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 1.6e-172 609.8 404 71.5
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 8.7e-171 604.0 403 70.2
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 8.7e-171 604.0 412 70.6
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 8.7e-171 604.0 404 70.5
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 1.1e-170 603.6 410 70.7
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 7.4e-170 600.9 407 69.0
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 2.1e-169 599.4 412 67.5
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 2.8e-169 599.0 405 70.6
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 1.4e-168 596.7 405 70.4
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 9.0e-168 594.0 409 68.0
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 7.6e-167 590.9 411 69.6
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 8.4e-166 587.4 409 70.7
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 1.1e-165 587.0 405 67.9
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 5.5e-165 584.7 405 67.7
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 5.5e-165 584.7 405 67.7
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 9.3e-165 583.9 404 68.1
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 1.2e-164 583.6 405 67.4
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.6e-164 583.2 405 66.9
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 2.1e-164 582.8 403 68.2
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 3.0e-163 578.9 405 68.6
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 3.0e-163 578.9 405 70.1
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 3.9e-163 578.6 405 67.2
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 6.7e-163 577.8 411 66.2
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 1.9e-162 576.2 401 68.6
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.9e-162 576.2 405 68.4
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 3.3e-162 575.5 405 67.9
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 5.7e-162 574.7 405 68.1
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 5.7e-162 574.7 411 68.4
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 9.7e-162 573.9 409 66.7
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 1.3e-161 573.5 405 66.7
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 1.4e-160 570.1 405 67.4
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 1.4e-160 570.1 405 67.4
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 6.9e-160 567.8 405 66.7
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 6.9e-160 567.8 403 67.0
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 6.9e-160 567.8 405 67.2
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.0e-159 566.2 412 66.5
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 5.9e-159 564.7 405 67.2
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 7.7e-159 564.3 409 65.8
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 1.3e-158 563.5 405 66.9
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 2.9e-158 562.4 406 67.0
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 3.8e-158 562.0 404 65.8
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 4.2e-157 558.5 404 66.8
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 4.2e-157 558.5 413 66.6
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 7.2e-157 557.8 404 67.1
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 1.2e-156 557.0 405 65.7
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 1.2e-156 557.0 405 68.1
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 1.2e-156 557.0 405 68.1
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 1.2e-156 557.0 404 67.1
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 2.7e-156 555.8 405 65.2
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 1.8e-155 553.1 405 66.7
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 2.3e-155 552.7 403 66.0
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 5.7e-154 548.1 405 64.2
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 7.4e-154 547.7 405 65.9
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 7.4e-154 547.7 402 65.2
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 1.7e-153 546.6 405 65.7
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 3.7e-153 545.4 404 66.3
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 4.8e-153 545.0 405 64.2
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 1.1e-152 543.9 403 65.0
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 1.1e-152 543.9 405 65.7
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 1.4e-152 543.5 406 65.8
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 6.9e-152 541.2 407 63.6
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 9.1e-152 540.8 405 64.9
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 3.4e-151 538.9 405 64.9
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 5.0e-150 535.0 405 64.0
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 8.5e-150 534.3 403 63.0
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 8.5e-150 534.3 405 64.7
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 1.4e-149 533.5 403 63.0
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.2e-148 530.4 416 61.8
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 6.1e-148 528.1 403 62.3
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 1.4e-147 526.9 401 63.3
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 1.8e-147 526.6 400 63.5
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 1.5e-146 523.5 412 62.4
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 1.7e-145 520.0 403 61.8
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 1.4e-144 516.9 412 61.4
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 4.1e-144 515.4 300 82.7
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 5.3e-144 515.0 453 57.0
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 7.7e-143 511.1 405 61.7
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 1.7e-142 510.0 440 58.2
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 3.2e-141 505.8 420 59.8
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 3.2e-141 505.8 404 60.1
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 1.4e-139 500.4 420 59.0
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 1.7e-137 493.4 413 60.5
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 4.1e-136 488.8 411 58.6
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 4.1e-136 488.8 411 59.4
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 4.1e-136 488.8 404 58.7
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 7.0e-136 488.0 414 59.9
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 2.6e-135 486.1 390 61.0
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 1.3e-134 483.8 411 57.7
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 1.9e-133 479.9 410 58.5
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 1.9e-133 479.9 347 65.7
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 5.5e-133 478.4 354 65.0
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 2.7e-132 476.1 417 56.6
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 4.7e-132 475.3 348 65.8
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 1.8e-131 473.4 372 61.8
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 1.5e-130 470.3 372 61.3
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 2.4e-128 463.0 351 62.1
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 5.9e-127 458.4 401 57.4
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.1e-125 454.1 346 63.6
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 3.7e-105 386.0 285 66.0
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 5.4e-88 328.9 248 65.3
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 1.1e-85 321.2 407 44.7
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 2.9e-81 306.6 416 41.6
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 8.7e-78 295.0 212 69.8
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 9.6e-77 291.6 216 66.2
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 8.1e-76 288.5 200 70.0
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 6.9e-75 285.4 211 66.4
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 1.2e-71 274.6 409 39.1
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 1.5e-66 257.7 404 39.9
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 3.5e-63 246.5 435 36.6
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 1.5e-58 231.1 188 58.5
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 1.6e-55 221.1 364 39.3
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 5.0e-49 199.5 170 57.1
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 7.4e-45 185.7 424 30.4
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 1.4e-38 164.9 199 46.7
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 3.0e-38 163.7 236 38.1
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 5.3e-35 152.9 338 31.1
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 6.9e-35 152.5 276 37.0
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.7e-31 140.6 123 58.5
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.0e-30 138.7 112 61.6
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 3.3e-29 133.7 116 57.8
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 3.1e-27 127.1 82 69.5
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.4e-22 111.7 111 48.6
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 1.1e-19 102.1 73 68.5
Hma1.2p1_2773F.1_g328260 Hydrangea macrophylla HOM05D005741 ORTHO05D228475 1.4e-14 85.1 89 50.6
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 6.5e-09 66.2 51 56.9


User provided reference genes

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