Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_37022 Corchorus olitorius HOM05D006666 ORTHO05D008276 2.6e-19 97.8 52 100.0
COL.COLO4_25502 Corchorus olitorius HOM05D006666 ORTHO05D008276 2.2e-18 94.7 52 98.1
Duzib205G1681 Durio zibethinus HOM05D006666 ORTHO05D008276 8.5e-15 82.8 52 82.7
COL.COLO4_36658 Corchorus olitorius HOM05D006666 ORTHO05D008276 2.3e-12 74.7 40 100.0
Eucgr.H00663 Eucalyptus grandis HOM05D006666 ORTHO05D008276 2.3e-12 74.7 53 77.4
Potri.004G066900 Populus trichocarpa HOM05D006666 ORTHO05D008276 2.3e-12 74.7 52 76.9
Sabra04G0044800 Salix brachista HOM05D006666 ORTHO05D008276 3.0e-12 74.3 52 75.0
Sabra11G0106200 Salix brachista HOM05D006666 ORTHO05D008276 3.0e-12 74.3 52 75.0
Sabra17G0092500 Salix brachista HOM05D006666 ORTHO05D008276 3.0e-12 74.3 52 75.0
Prupe.5G245400 Prunus persica HOM05D006666 ORTHO05D008276 4.0e-12 73.9 52 73.1
Gohir.A07G062700 Gossypium hirsutum HOM05D006666 ORTHO05D008276 5.2e-12 73.6 52 76.9
Gorai.001G070900 Gossypium raimondii HOM05D006666 ORTHO05D008276 5.2e-12 73.6 52 76.9
Aa31sc45G80 Aethionema arabicum HOM05D006666 ORTHO05D008276 8.8e-12 72.8 52 69.2
CDE06G1954 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 8.8e-12 72.8 53 73.6
PGR083G1370 Punica granatum HOM05D006666 ORTHO05D008276 8.8e-12 72.8 52 73.1
GSVIVG01024243001 Vitis vinifera HOM05D006666 ORTHO05D008276 8.8e-12 72.8 52 78.8
MBI06_g22566_MAGBIO Magnolia biondii HOM05D006666 ORTHO05D008276 1.2e-11 72.4 52 73.1
PSO063G5885 Papaver somniferum HOM05D006666 ORTHO05D008276 1.2e-11 72.4 52 71.2
PSO782G1773 Papaver somniferum HOM05D006666 ORTHO05D008276 1.2e-11 72.4 52 71.2
RcHm_v2.0_Chr7g0176901 Rosa chinensis HOM05D006666 ORTHO05D008276 1.2e-11 72.4 52 69.2
THA.LOC104812606 Tarenaya hassleriana HOM05D006666 ORTHO05D008276 1.2e-11 72.4 53 71.7
Thecc.03G072200 Theobroma cacao HOM05D006666 ORTHO05D008276 1.5e-11 72.0 52 75.0
MD06G1241100 Malus domestica HOM05D006666 ORTHO05D008276 2.0e-11 71.6 52 71.2
Atru.chr9.23 Acer truncatum HOM05D006666 ORTHO05D008276 3.4e-11 70.9 52 71.2
Dinv09758 Davidia involucrata HOM05D006666 ORTHO05D008276 5.7e-11 70.1 52 69.2
Gohir.D07G067300 Gossypium hirsutum HOM05D006666 ORTHO05D008276 5.7e-11 70.1 52 75.0
Sp1g24340 Schrenkiella parvula HOM05D006666 ORTHO05D008276 5.7e-11 70.1 53 69.8
CSS0032824 Camellia sinensis var. sinensis HOM05D006666 ORTHO05D008276 7.5e-11 69.7 53 73.6
MSTRG.11567 Avicennia marina HOM05D006666 ORTHO05D008276 9.8e-11 69.3 52 67.3
Cfa017808 Carpinus fangiana HOM05D006666 ORTHO05D008276 9.8e-11 69.3 52 69.2
Haze_18405 Corylus avellana HOM05D006666 ORTHO05D008276 9.8e-11 69.3 52 69.2
AT1G28150 Arabidopsis thaliana HOM05D006666 ORTHO05D008276 1.3e-10 68.9 53 67.9
FAN13G2387 Fragaria x ananassa HOM05D006666 ORTHO05D008276 1.3e-10 68.9 52 67.3
vmacro17828 Vaccinium macrocarpon HOM05D006666 ORTHO05D008276 1.3e-10 68.9 52 69.2
Actinidia02653 Actinidia chinensis HOM05D006666 ORTHO05D008276 1.7e-10 68.6 52 69.2
Thhalv10009115m.g Eutrema salsugineum HOM05D006666 ORTHO05D008276 1.7e-10 68.6 54 66.7
Ciclev10023646m.g Citrus clementina HOM05D006666 ORTHO05D008276 2.2e-10 68.2 52 67.3
AL1G41680 Arabidopsis lyrata HOM05D006666 ORTHO05D008276 2.8e-10 67.8 53 66.0
BraA07t28933Z Brassica rapa HOM05D006666 ORTHO05D008276 2.8e-10 67.8 53 66.0
AUR62037011 Chenopodium quinoa HOM05D006666 ORTHO05D008276 2.8e-10 67.8 52 67.3
FAN04G1657 Fragaria x ananassa HOM05D006666 ORTHO05D008276 2.8e-10 67.8 52 65.4
FAN08G1977 Fragaria x ananassa HOM05D006666 ORTHO05D008276 2.8e-10 67.8 52 65.4
BcaC06g35338 Brassica carinata HOM05D006666 ORTHO05D008276 3.7e-10 67.4 53 66.0
C07p17240 Brassica napus HOM05D006666 ORTHO05D008276 3.7e-10 67.4 53 66.0
BolC7t42228H Brassica oleracea HOM05D006666 ORTHO05D008276 3.7e-10 67.4 53 66.0
MD14G1247300 Malus domestica HOM05D006666 ORTHO05D008276 3.7e-10 67.4 52 67.3
BcaC05g26820 Brassica carinata HOM05D006666 ORTHO05D008276 4.8e-10 67.0 54 68.5
C05p26900 Brassica napus HOM05D006666 ORTHO05D008276 4.8e-10 67.0 54 68.5
BolC5t31408H Brassica oleracea HOM05D006666 ORTHO05D008276 4.8e-10 67.0 54 68.5
Oeu038394.2 Olea europaea HOM05D006666 ORTHO05D008276 4.8e-10 67.0 52 71.2
Rhsim08G0006200 Rhododendron simsii HOM05D006666 ORTHO05D008276 4.8e-10 67.0 52 69.2
TAR629G2781 Trochodendron aralioides HOM05D006666 ORTHO05D008276 4.8e-10 67.0 52 75.0
CARHR027620 Cardamine hirsuta HOM05D006666 ORTHO05D008276 6.3e-10 66.6 53 66.0
FvH4_5g18600 Fragaria vesca HOM05D006666 ORTHO05D008276 6.3e-10 66.6 52 65.4
FAN18G1406 Fragaria x ananassa HOM05D006666 ORTHO05D008276 6.3e-10 66.6 52 65.4
VMungo0720G1342 Vigna mungo HOM05D006666 ORTHO05D008276 6.3e-10 66.6 52 71.2
A07p11450 Brassica napus HOM05D006666 ORTHO05D008276 1.1e-09 65.9 53 66.0
CDE04G3444 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 1.1e-09 65.9 54 66.7
BcaB03g13950 Brassica carinata HOM05D006666 ORTHO05D008276 1.8e-09 65.1 53 66.0
Ca_09926_v3 Cicer arietinum L. HOM05D006666 ORTHO05D008276 1.8e-09 65.1 52 71.2
Ah.15g090740 Amaranthus hybridus HOM05D006666 ORTHO05D008276 2.4e-09 64.7 53 64.2
AUR62006207 Chenopodium quinoa HOM05D006666 ORTHO05D008276 2.4e-09 64.7 52 65.4
ATR0124G047 Amborella trichopoda HOM05D006666 ORTHO05D008276 3.1e-09 64.3 52 67.3
EL10Ac7g16891 Beta vulgaris HOM05D006666 ORTHO05D008276 3.1e-09 64.3 52 61.5
ECA233G5286 Erigeron canadensis HOM05D006666 ORTHO05D008276 3.1e-09 64.3 52 67.3
Glyma.10G174200 Glycine max HOM05D006666 ORTHO05D008276 4.1e-09 63.9 52 71.2
A09p37900 Brassica napus HOM05D006666 ORTHO05D008276 5.4e-09 63.5 54 66.7
BraA09t39302Z Brassica rapa HOM05D006666 ORTHO05D008276 5.4e-09 63.5 54 66.7
TWI81G0077 Tripterygium wilfordii HOM05D006666 ORTHO05D008276 5.4e-09 63.5 52 61.5
Hund06740 Selenicereus undatus HOM05D006666 ORTHO05D008276 7.0e-09 63.2 52 63.5
Sopen03g029740 Solanum pennellii HOM05D006666 ORTHO05D008276 7.0e-09 63.2 52 63.5
arahy.Tifrunner.gnm1.ann1.UGS5Z8 Arachis hypogaea HOM05D006666 ORTHO05D008276 9.1e-09 62.8 52 67.3
Nn4g25066 Nelumbo nucifera HOM05D006666 ORTHO05D008276 9.1e-09 62.8 49 65.3
PGSC0003DMG400015210 Solanum tuberosum HOM05D006666 ORTHO05D008276 9.1e-09 62.8 52 67.3
Carub.0001s2658 Capsella rubella HOM05D006666 ORTHO05D008276 1.2e-08 62.4 53 62.3
Glyma.20G216200 Glycine max HOM05D006666 ORTHO05D008276 1.2e-08 62.4 52 69.2
Solyc03g019880.3 Solanum lycopersicum HOM05D006666 ORTHO05D008276 1.2e-08 62.4 52 65.4
Nitab4.5_0008182g0010 Nicotiana tabacum HOM05D006666 ORTHO05D008276 1.6e-08 62.0 52 67.3
Phvul.L006501 Phaseolus vulgaris HOM05D006666 ORTHO05D008276 1.6e-08 62.0 52 71.2
SalBow5G0154 Salvia bowleyana HOM05D006666 ORTHO05D008276 1.6e-08 62.0 52 65.4
SGA_v2.0_scaffold25G10726 Striga asiatica HOM05D006666 ORTHO05D008276 1.6e-08 62.0 52 63.5
HPP92_021068 Vanilla planifolia HOM05D006666 ORTHO05D008276 1.6e-08 62.0 55 63.6
CiPaw.16G075700 Carya illinoinensis HOM05D006666 ORTHO05D008276 2.7e-08 61.2 52 65.4
Migut.O00284 Erythranthe guttata HOM05D006666 ORTHO05D008276 2.7e-08 61.2 54 63.0
Lj5g0025802 Lotus japonicus HOM05D006666 ORTHO05D008276 2.7e-08 61.2 52 67.3
QL10p036089 Quercus lobata HOM05D006666 ORTHO05D008276 2.7e-08 61.2 53 69.8
TPR.G8870 Trifolium pratense HOM05D006666 ORTHO05D008276 2.7e-08 61.2 52 65.4
CAN.G861.22 Capsicum annuum HOM05D006666 ORTHO05D008276 4.5e-08 60.5 53 62.3
Os04g0528100 Oryza sativa ssp. japonica HOM05D006666 ORTHO05D008276 4.5e-08 60.5 53 58.5
QL10p036477 Quercus lobata HOM05D006666 ORTHO05D008276 4.5e-08 60.5 53 67.9
SalBow1G4610 Salvia bowleyana HOM05D006666 ORTHO05D008276 4.5e-08 60.5 45 66.7
Cc00_g07700 Coffea canephora HOM05D006666 ORTHO05D008276 5.9e-08 60.1 52 63.5
Nitab4.5_0009307g0050 Nicotiana tabacum HOM05D006666 ORTHO05D008276 5.9e-08 60.1 52 67.3
ClCG04G012450 Citrullus lanatus HOM05D006666 ORTHO05D008276 7.7e-08 59.7 52 59.6
Sc10g0008660 Simmondsia chinensis HOM05D006666 ORTHO05D008276 7.7e-08 59.7 52 63.5
Lsat_1_v5_gn_8_1660 Lactuca sativa HOM05D006666 ORTHO05D008276 1.0e-07 59.3 55 58.2
Medtr1g077550 Medicago truncatula HOM05D006666 ORTHO05D008276 1.0e-07 59.3 52 69.2
DCAR_011403 Daucus carota HOM05D006666 ORTHO05D008276 1.3e-07 58.9 52 59.6
Psat6g054440 Pisum sativum HOM05D006666 ORTHO05D008276 1.3e-07 58.9 59 62.7
Hma1.2p1_0816F.1_g222970 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 1.7e-07 58.5 55 61.8
Hma1.2p1_0816F.1_g222980 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 1.7e-07 58.5 55 61.8
MELO3C001965.2 Cucumis melo HOM05D006666 ORTHO05D008276 2.9e-07 57.8 52 61.5
Manes.02G219900 Manihot esculenta HOM05D006666 ORTHO05D008276 3.8e-07 57.4 52 63.5
Peaxi162Scf00171g00030 Petunia axillaris HOM05D006666 ORTHO05D008276 3.8e-07 57.4 52 61.5
Lalb_Chr21g0311701 Lupinus albus HOM05D006666 ORTHO05D008276 5.0e-07 57.0 52 61.5
unitig_749.g13724 Utricularia gibba HOM05D006666 ORTHO05D008276 5.0e-07 57.0 52 57.7
Sed0024015 Sechium edule HOM05D006666 ORTHO05D008276 1.5e-06 55.5 52 59.6
HanXRQChr05g0141151 Helianthus annuus HOM05D006666 ORTHO05D008276 1.9e-06 55.1 52 61.5


User provided reference genes

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