Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_36634 Corchorus olitorius HOM05D024970 ORTHO05D005362 1.1e-33 146.0 69 100.0
COL.COLO4_15679 Corchorus olitorius HOM05D024970 ORTHO05D005362 2.7e-24 114.8 69 82.6
COL.COLO4_34385 Corchorus olitorius HOM05D002054 ORTHO05D005362 1.3e-23 112.5 58 89.7
COL.COLO4_07565 Corchorus olitorius HOM05D024970 ORTHO05D005362 1.5e-22 109.0 69 79.7
COL.COLO4_07566 Corchorus olitorius HOM05D024970 ORTHO05D005362 7.3e-22 106.7 69 78.3
Gohir.A01G130300 Gossypium hirsutum HOM05D002054 ORTHO05D005362 4.9e-18 94.0 56 78.6
Thecc.10G103600 Theobroma cacao HOM05D002054 ORTHO05D005362 8.4e-18 93.2 56 78.6
Gohir.D01G119300 Gossypium hirsutum HOM05D002054 ORTHO05D005362 5.4e-17 90.5 56 76.8
Gorai.002G145600 Gossypium raimondii HOM05D002054 ORTHO05D005362 5.4e-17 90.5 56 76.8
Duzib128G0063 Durio zibethinus HOM05D002054 ORTHO05D005362 7.1e-17 90.1 56 76.8
COL.COLO4_19628 Corchorus olitorius HOM05D024970 ORTHO05D005362 3.5e-16 87.8 52 82.7
Gohir.A10G198200 Gossypium hirsutum HOM05D002054 ORTHO05D005362 3.5e-16 87.8 56 73.2
Gohir.D10G205300 Gossypium hirsutum HOM05D002054 ORTHO05D005362 3.5e-16 87.8 56 73.2
Gorai.011G230300 Gossypium raimondii HOM05D002054 ORTHO05D005362 3.5e-16 87.8 56 73.2
Duzib114G0207 Durio zibethinus HOM05D002054 ORTHO05D005362 4.6e-16 87.4 56 75.0
Ciclev10030776m.g Citrus clementina HOM05D002054 ORTHO05D005362 1.8e-12 75.5 56 66.1
Prupe.2G084200 Prunus persica HOM05D002054 ORTHO05D005362 9.0e-12 73.2 60 60.0
TAR633G2241 Trochodendron aralioides HOM05D002054 ORTHO05D005362 1.7e-10 68.9 62 58.1
GSVIVG01034750001 Vitis vinifera HOM05D002054 ORTHO05D005362 1.7e-10 68.9 55 60.0
CiPaw.13G037500 Carya illinoinensis HOM05D002054 ORTHO05D005362 2.2e-10 68.6 51 58.8
Atru.chr12.979 Acer truncatum HOM05D002054 ORTHO05D005362 3.8e-10 67.8 62 56.5
MD07G1067000 Malus domestica HOM05D002054 ORTHO05D005362 3.8e-10 67.8 61 52.5
QL04p043028 Quercus lobata HOM05D002054 ORTHO05D005362 3.8e-10 67.8 62 54.8
TAR636G2980 Trochodendron aralioides HOM05D002054 ORTHO05D005362 3.8e-10 67.8 62 58.1
Cfa011246 Carpinus fangiana HOM05D002054 ORTHO05D005362 1.9e-09 65.5 55 56.4
Rhsim03G0104800 Rhododendron simsii HOM05D002054 ORTHO05D005362 1.9e-09 65.5 56 53.6
Eucgr.G02706 Eucalyptus grandis HOM05D002054 ORTHO05D005362 3.2e-09 64.7 56 57.1
Oeu014439.1 Olea europaea HOM05D002054 ORTHO05D005362 3.2e-09 64.7 46 60.9
Actinidia06702 Actinidia chinensis HOM05D002054 ORTHO05D005362 4.2e-09 64.3 60 55.0
RcHm_v2.0_Chr1g0332951 Rosa chinensis HOM05D002054 ORTHO05D005362 4.2e-09 64.3 55 60.0
Dinv02552 Davidia involucrata HOM05D002054 ORTHO05D005362 5.4e-09 63.9 62 54.8
Lj5g0009616 Lotus japonicus HOM05D002054 ORTHO05D005362 5.4e-09 63.9 62 53.2
Phvul.007G247300 Phaseolus vulgaris HOM05D002054 ORTHO05D005362 5.4e-09 63.9 43 65.1
FAN10G0279 Fragaria x ananassa HOM05D000139 ORTHO05D008955 7.1e-09 63.5 56 57.1
FvH4_7g05840 Fragaria vesca HOM05D002054 ORTHO05D005362 9.3e-09 63.2 56 57.1
FAN01G1518 Fragaria x ananassa HOM05D002054 ORTHO05D005362 9.3e-09 63.2 56 57.1
FAN01G3140 Fragaria x ananassa HOM05D002054 ORTHO05D005362 9.3e-09 63.2 56 57.1
FAN06G1605 Fragaria x ananassa HOM05D002054 ORTHO05D005362 9.3e-09 63.2 56 57.1
FAN10G1126 Fragaria x ananassa HOM05D002054 ORTHO05D005362 9.3e-09 63.2 56 57.1
Actinidia18585 Actinidia chinensis HOM05D002054 ORTHO05D005362 1.2e-08 62.8 60 53.3
Ca_26320_v3 Cicer arietinum L. HOM05D002054 ORTHO05D005362 1.2e-08 62.8 45 62.2
arahy.Tifrunner.gnm1.ann1.9TB0NK Arachis hypogaea HOM05D002054 ORTHO05D005362 1.6e-08 62.4 57 52.6
vmacro07231 Vaccinium macrocarpon HOM05D002054 ORTHO05D005362 1.6e-08 62.4 56 51.8
Ca_10503_v3 Cicer arietinum L. HOM05D002054 ORTHO05D005362 2.1e-08 62.0 63 49.2
FAN03G2655 Fragaria x ananassa HOM05D002054 ORTHO05D005362 2.1e-08 62.0 56 55.4
arahy.Tifrunner.gnm1.ann1.KWLN2P Arachis hypogaea HOM05D002054 ORTHO05D005362 2.7e-08 61.6 55 54.5
FAN06G2071 Fragaria x ananassa HOM05D002054 ORTHO05D005362 2.7e-08 61.6 56 55.4
Sed0012473 Sechium edule HOM05D002054 ORTHO05D005362 3.5e-08 61.2 62 50.0
Sed0015776 Sechium edule HOM05D002054 ORTHO05D005362 3.5e-08 61.2 60 50.0
VMungo0720G2884 Vigna mungo HOM05D002054 ORTHO05D005362 3.5e-08 61.2 43 62.8
Lalb_Chr19g0129221 Lupinus albus HOM05D002054 ORTHO05D005362 4.6e-08 60.8 60 50.0
FAN10G2249 Fragaria x ananassa HOM05D002054 ORTHO05D005362 6.0e-08 60.5 56 53.6
MD02G1255000 Malus domestica HOM05D002054 ORTHO05D005362 6.0e-08 60.5 40 65.0
Glyma.10G112500 Glycine max HOM05D002054 ORTHO05D005362 1.0e-07 59.7 61 50.8
CiPaw.14G029800 Carya illinoinensis HOM05D002054 ORTHO05D005362 1.3e-07 59.3 56 50.0
Haze_02583 Corylus avellana HOM05D002054 ORTHO05D005362 1.3e-07 59.3 51 54.9
Psat6g177320 Pisum sativum HOM05D002054 ORTHO05D005362 1.3e-07 59.3 61 50.8
Potri.008G024300 Populus trichocarpa HOM05D002054 ORTHO05D005362 1.3e-07 59.3 50 52.0
Lj3A930T58 Lonicera japonica HOM05D002054 ORTHO05D005362 1.8e-07 58.9 49 53.1
Potri.010G235900 Populus trichocarpa HOM05D002054 ORTHO05D005362 1.8e-07 58.9 50 52.0
TWI38G0197 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 1.8e-07 58.9 43 60.5
Ah.04g163740 Amaranthus hybridus HOM05D002054 ORTHO05D005362 2.3e-07 58.5 58 51.7
ClCG08G008170 Citrullus lanatus HOM05D002054 ORTHO05D005362 2.3e-07 58.5 62 48.4
Lalb_Chr02g0151451 Lupinus albus HOM05D002054 ORTHO05D005362 2.3e-07 58.5 62 48.4
SalBow3G0957 Salvia bowleyana HOM05D002054 ORTHO05D005362 2.3e-07 58.5 62 46.8
SalBow3G2625 Salvia bowleyana HOM05D002054 ORTHO05D005362 2.3e-07 58.5 62 46.8
Cpa.g.sc19.5 Carica papaya HOM05D002054 ORTHO05D005362 3.0e-07 58.2 61 50.8
Lalb_Chr21g0313271 Lupinus albus HOM05D002054 ORTHO05D005362 3.9e-07 57.8 62 46.8
Glyma.02G160100 Glycine max HOM05D002054 ORTHO05D005362 5.1e-07 57.4 61 50.8
Lsat_1_v5_gn_2_105021 Lactuca sativa HOM05D002054 ORTHO05D005362 6.7e-07 57.0 49 53.1
Actinidia31094 Actinidia chinensis HOM05D002054 ORTHO05D005362 8.7e-07 56.6 54 53.7
Aqoxy4G02845 Aquilegia oxysepala HOM05D002054 ORTHO05D005362 1.1e-06 56.2 57 54.4
HanXRQChr05g0146881 Helianthus annuus HOM05D002054 ORTHO05D005362 1.1e-06 56.2 42 57.1
Sabra10G0183000 Salix brachista HOM05D002054 ORTHO05D005362 1.1e-06 56.2 50 52.0
Lj5g0007986 Lotus japonicus HOM05D002054 ORTHO05D005362 1.5e-06 55.8 63 50.8
Sabra08G0016300 Salix brachista HOM05D002054 ORTHO05D005362 1.5e-06 55.8 61 49.2
TWI63G1527 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 1.5e-06 55.8 43 60.5
ECA238G3010 Erigeron canadensis HOM05D002054 ORTHO05D005362 1.9e-06 55.5 50 54.0
CsaV3_6G004140 Cucumis sativus L. HOM05D002054 ORTHO05D005362 2.5e-06 55.1 59 49.2
Hund06770 Selenicereus undatus HOM05D002054 ORTHO05D005362 2.5e-06 55.1 41 58.5
Migut.F01813 Erythranthe guttata HOM05D002054 ORTHO05D005362 3.3e-06 54.7 56 48.2
Lsat_1_v5_gn_0_7461 Lactuca sativa HOM05D002054 ORTHO05D005362 3.3e-06 54.7 43 53.5
PGR142G4193 Punica granatum HOM05D002054 ORTHO05D005362 3.3e-06 54.7 65 47.7
Oeu055045.1 Olea europaea HOM05D002054 ORTHO05D005362 5.6e-06 53.9 53 45.3
Actinidia34712 Actinidia chinensis HOM05D002054 ORTHO05D005362 7.4e-06 53.5 54 51.9
Psat6g092960 Pisum sativum HOM05D002054 ORTHO05D005362 7.4e-06 53.5 42 52.4
CSS0009565 Camellia sinensis var. sinensis HOM05D002054 ORTHO05D005362 9.6e-06 53.1 47 55.3
Manes.10G057400 Manihot esculenta HOM05D002054 ORTHO05D005362 9.6e-06 53.1 54 48.1
Medtr1g050512 Medicago truncatula HOM05D002054 ORTHO05D005362 9.6e-06 53.1 60 46.7
Sc20g0001250 Simmondsia chinensis HOM05D002054 ORTHO05D005362 9.6e-06 53.1 43 58.1
THA.LOC104823188 Tarenaya hassleriana HOM05D002054 ORTHO05D005362 9.6e-06 53.1 59 49.2


User provided reference genes

Program Settings