Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 1.0e-84 316.6 151 100.0
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 5.1e-68 261.2 140 89.3
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 1.2e-64 250.0 140 85.0
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 1.2e-64 250.0 140 85.0
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 3.4e-64 248.4 140 84.3
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 2.7e-53 212.2 144 69.4
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 1.8e-52 209.5 140 70.7
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 1.8e-52 209.5 140 70.0
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 1.9e-51 206.1 140 69.3
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 3.3e-51 205.3 142 69.0
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 9.6e-51 203.8 140 68.6
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 2.1e-50 202.6 140 70.0
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 3.7e-50 201.8 140 68.6
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 8.1e-50 200.7 140 70.0
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 8.1e-50 200.7 140 65.7
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 1.1e-49 200.3 140 70.0
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 2.4e-49 199.1 140 63.6
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.4e-49 199.1 140 63.6
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.4e-49 199.1 140 63.6
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 4.0e-49 198.4 140 63.6
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 5.3e-49 198.0 140 62.9
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 5.3e-49 198.0 140 67.1
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 5.3e-49 198.0 140 67.1
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 6.9e-49 197.6 140 67.9
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 6.9e-49 197.6 140 67.9
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 6.9e-49 197.6 140 65.0
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 6.9e-49 197.6 140 65.7
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 1.5e-48 196.4 140 66.4
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 2.0e-48 196.1 140 66.4
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 3.4e-48 195.3 140 64.3
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 4.5e-48 194.9 140 62.9
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 5.8e-48 194.5 140 65.7
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 5.8e-48 194.5 150 64.0
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 5.8e-48 194.5 151 60.9
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 1.0e-47 193.7 141 67.4
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 2.2e-47 192.6 140 62.9
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 3.8e-47 191.8 140 66.4
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 3.8e-47 191.8 137 66.4
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 3.8e-47 191.8 137 67.2
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 1.4e-46 189.9 140 62.1
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 1.2e-45 186.8 140 67.1
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.6e-45 186.4 140 61.4
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.6e-45 186.4 140 61.4
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 2.1e-45 186.0 140 62.1
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 4.6e-45 184.9 140 62.9
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 4.6e-45 184.9 142 60.6
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 6.0e-45 184.5 142 59.9
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 1.0e-44 183.7 140 61.4
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 3.9e-44 181.8 177 53.7
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 6.7e-44 181.0 139 60.4
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.5e-43 179.9 140 58.6
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 1.5e-43 179.9 140 61.4
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.9e-43 179.5 140 59.3
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 2.5e-43 179.1 140 60.0
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 2.5e-43 179.1 140 60.0
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 2.5e-43 179.1 140 60.0
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 2.5e-43 179.1 140 60.0
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 4.3e-43 178.3 140 58.6
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 5.7e-43 177.9 140 56.4
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 9.6e-43 177.2 140 60.0
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 1.6e-42 176.4 142 59.2
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 2.8e-42 175.6 140 57.9
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 3.7e-42 175.3 140 59.3
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 3.7e-42 175.3 140 57.1
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 4.8e-42 174.9 140 59.3
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 6.3e-42 174.5 140 57.1
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 6.3e-42 174.5 140 57.1
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 6.3e-42 174.5 140 57.9
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 8.2e-42 174.1 140 57.9
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 1.1e-41 173.7 140 57.9
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 1.1e-41 173.7 140 57.9
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 1.4e-41 173.3 140 57.9
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 1.8e-41 172.9 140 58.6
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 2.4e-41 172.6 140 57.1
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 2.4e-41 172.6 140 56.4
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 3.1e-41 172.2 139 58.3
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 3.1e-41 172.2 139 58.3
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 3.1e-41 172.2 140 57.1
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 4.1e-41 171.8 140 57.1
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 6.9e-41 171.0 140 64.3
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 9.0e-41 170.6 140 56.4
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 9.0e-41 170.6 140 56.4
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 1.5e-40 169.9 140 55.7
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 1.5e-40 169.9 140 55.7
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 2.6e-40 169.1 140 57.1
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 1.0e-39 167.2 140 55.7
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 1.0e-39 167.2 140 57.1
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 1.3e-39 166.8 142 56.3
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 1.3e-39 166.8 141 56.7
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 1.7e-39 166.4 140 56.4
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 2.2e-39 166.0 140 57.9
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 2.2e-39 166.0 140 57.9
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 2.2e-39 166.0 140 57.9
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 5.0e-39 164.9 140 57.1
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 6.5e-39 164.5 141 59.6
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 6.5e-39 164.5 140 56.4
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 8.5e-39 164.1 141 59.6
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 1.9e-38 162.9 141 56.0
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 1.9e-38 162.9 140 55.7
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 3.2e-38 162.2 191 45.0
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 7.2e-38 161.0 160 49.4
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 2.1e-37 159.5 161 49.1
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 4.6e-37 158.3 145 54.5
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 6.1e-37 157.9 141 56.0
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 6.1e-37 157.9 141 56.0
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 3.9e-36 155.2 153 47.7
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 1.5e-35 153.3 144 52.1
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 1.5e-35 153.3 132 50.8
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 3.3e-35 152.1 168 45.2
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 3.7e-34 148.7 165 46.7
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 6.3e-34 147.9 140 50.0
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 1.4e-33 146.7 160 45.0
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 2.4e-33 146.0 125 57.6
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 4.1e-33 145.2 137 48.2
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 1.5e-32 143.3 140 50.7
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 2.9e-31 139.0 140 45.0
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 1.9e-30 136.3 140 54.3
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 9.4e-30 134.0 106 58.5
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 4.6e-29 131.7 162 41.4
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 1.4e-28 130.2 163 44.8
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 1.8e-28 129.8 97 64.9
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 4.4e-27 125.2 141 44.7
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 2.2e-26 122.9 140 49.3
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.2e-26 122.9 95 54.7
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 8.2e-26 120.9 141 44.0
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 3.1e-25 119.0 141 41.8
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 4.1e-25 118.6 84 67.9
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 4.1e-25 118.6 141 39.7
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 9.4e-22 107.5 106 46.2
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 2.1e-21 106.3 145 40.0
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 2.7e-21 105.9 91 62.6
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 6.1e-21 104.8 81 56.8
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 8.8e-20 100.9 76 63.2
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 8.2e-18 94.4 146 36.3
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 1.4e-17 93.6 143 39.2
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 2.0e-16 89.7 140 38.6
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 3.5e-16 89.0 158 34.2
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 1.0e-15 87.4 138 32.6
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 2.5e-14 82.8 67 58.2
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 5.5e-14 81.6 143 33.6
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 3.6e-13 79.0 137 32.1
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 3.6e-13 79.0 135 34.8
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 1.6e-08 63.5 140 27.9
Sc15g0004100 Simmondsia chinensis HOM05D001775 ORTHO05D006205 7.7e-08 61.2 147 30.6
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 3.2e-06 55.8 64 39.1


User provided reference genes

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