Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_36480 Corchorus olitorius HOM05D003167 ORTHO05D003929 5.8e-130 467.6 243 100.0
Potri.001G242900 Populus trichocarpa HOM05D003167 ORTHO05D003929 2.2e-60 236.5 274 50.4
Aqoxy1G01021 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 2.1e-55 219.9 179 63.7
Hund04098 Selenicereus undatus HOM05D003167 ORTHO05D003929 2.1e-55 219.9 181 65.2
Gohir.A04G067800 Gossypium hirsutum HOM05D003167 ORTHO05D003929 6.1e-55 218.4 180 64.4
Gohir.D04G106400 Gossypium hirsutum HOM05D003167 ORTHO05D003929 6.1e-55 218.4 180 64.4
Gorai.009G410400 Gossypium raimondii HOM05D003167 ORTHO05D003929 6.1e-55 218.4 180 64.4
Ciclev10011207m.g Citrus clementina HOM05D003167 ORTHO05D003929 1.0e-54 217.6 179 63.1
Thecc.05G076300 Theobroma cacao HOM05D003167 ORTHO05D003929 1.0e-54 217.6 180 64.4
Zm00001eb061170 Zea mays HOM05D003167 ORTHO05D003929 1.0e-54 217.6 161 69.6
Eucgr.K02416 Eucalyptus grandis HOM05D003167 ORTHO05D003929 1.8e-54 216.9 180 64.4
Potri.006G118700 Populus trichocarpa HOM05D003167 ORTHO05D003929 1.8e-54 216.9 204 57.8
arahy.Tifrunner.gnm1.ann1.P92TZX Arachis hypogaea HOM05D003167 ORTHO05D003929 2.3e-54 216.5 179 62.6
arahy.Tifrunner.gnm1.ann1.WY8M22 Arachis hypogaea HOM05D003167 ORTHO05D003929 2.3e-54 216.5 179 62.6
FAN05G3981 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.3e-54 216.5 181 63.5
QL07p041296 Quercus lobata HOM05D003167 ORTHO05D003929 2.3e-54 216.5 179 62.0
CDE04G1328 Ceratophyllum demersum HOM05D003167 ORTHO05D003929 3.0e-54 216.1 163 67.5
Cc10_g12700 Coffea canephora HOM05D003167 ORTHO05D003929 3.0e-54 216.1 171 67.3
Haze_19497 Corylus avellana HOM05D003167 ORTHO05D003929 3.0e-54 216.1 180 62.2
VMungo0720G2588 Vigna mungo HOM05D003167 ORTHO05D003929 3.0e-54 216.1 179 63.1
GSVIVG01033725001 Vitis vinifera HOM05D003167 ORTHO05D003929 3.0e-54 216.1 179 62.6
CSS0014862 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 3.9e-54 215.7 179 63.1
CSS0043785 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 3.9e-54 215.7 179 63.1
Cfa016494 Carpinus fangiana HOM05D003167 ORTHO05D003929 3.9e-54 215.7 180 61.7
Lj3C1008T14 Lonicera japonica HOM05D003167 ORTHO05D003929 3.9e-54 215.7 180 64.4
Sed0027110 Sechium edule HOM05D003167 ORTHO05D003929 3.9e-54 215.7 163 69.9
Aqoxy1G01022 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 5.1e-54 215.3 179 63.1
ClCG10G019590 Citrullus lanatus HOM05D003167 ORTHO05D003929 5.1e-54 215.3 180 63.9
Dinv35839 Davidia involucrata HOM05D003167 ORTHO05D003929 5.1e-54 215.3 180 63.3
TAR623G0013 Trochodendron aralioides HOM05D003167 ORTHO05D003929 5.1e-54 215.3 179 63.7
CsaV3_3G036590 Cucumis sativus L. HOM05D003167 ORTHO05D003929 6.7e-54 214.9 180 63.9
Duzib093G1992 Durio zibethinus HOM05D003167 ORTHO05D003929 6.7e-54 214.9 180 63.9
FAN05G5009 Fragaria x ananassa HOM05D003167 ORTHO05D003929 6.7e-54 214.9 181 63.5
Psat6g078080 Pisum sativum HOM05D003167 ORTHO05D003929 6.7e-54 214.9 179 63.1
TPR.G27088 Trifolium pratense HOM05D003167 ORTHO05D003929 6.7e-54 214.9 179 63.1
TAR636G1269 Trochodendron aralioides HOM05D003167 ORTHO05D003929 6.7e-54 214.9 179 62.0
MSTRG.21603 Avicennia marina HOM05D003167 ORTHO05D003929 8.8e-54 214.5 161 68.9
EL10Ac7g16722 Beta vulgaris HOM05D003167 ORTHO05D003929 8.8e-54 214.5 165 68.5
MELO3C009413.2 Cucumis melo HOM05D003167 ORTHO05D003929 8.8e-54 214.5 180 63.9
FvH4_6g17312 Fragaria vesca HOM05D003167 ORTHO05D003929 8.8e-54 214.5 181 63.5
FAN14G2907 Fragaria x ananassa HOM05D003167 ORTHO05D003929 8.8e-54 214.5 181 63.5
Manes.08G017200 Manihot esculenta HOM05D003167 ORTHO05D003929 8.8e-54 214.5 180 63.3
CANSAT80G1311 Cannabis sativa HOM05D003167 ORTHO05D003929 1.1e-53 214.2 180 63.3
Cpa.g.sc5.120 Carica papaya HOM05D003167 ORTHO05D003929 1.1e-53 214.2 179 63.7
AUR62040188 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.1e-53 214.2 187 61.5
AUR62042696 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.1e-53 214.2 187 61.5
FAN05G3544 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.1e-53 214.2 181 63.5
Psat3g037760 Pisum sativum HOM05D003167 ORTHO05D003929 1.1e-53 214.2 204 57.8
Sabra06G0093300 Salix brachista HOM05D003167 ORTHO05D003929 1.1e-53 214.2 204 57.4
Medtr7g102700 Medicago truncatula HOM05D003167 ORTHO05D003929 1.5e-53 213.8 179 62.6
PGR142G4079 Punica granatum HOM05D003167 ORTHO05D003929 1.5e-53 213.8 173 65.3
CiPaw.10G002600 Carya illinoinensis HOM05D003167 ORTHO05D003929 2.0e-53 213.4 180 62.2
COL.COLO4_22264 Corchorus olitorius HOM05D003167 ORTHO05D003929 2.0e-53 213.4 181 64.1
Lj1g0005916 Lotus japonicus HOM05D003167 ORTHO05D003929 2.0e-53 213.4 179 63.1
RcHm_v2.0_Chr3g0471451 Rosa chinensis HOM05D003167 ORTHO05D003929 2.0e-53 213.4 164 68.9
TPR.G31678 Trifolium pratense HOM05D003167 ORTHO05D003929 2.0e-53 213.4 204 57.8
Cc07_g17880 Coffea canephora HOM05D003167 ORTHO05D003929 2.6e-53 213.0 345 40.0
FAN02G2003 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.6e-53 213.0 181 63.0
Hma1.2p1_0564F.1_g179130 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 2.6e-53 213.0 180 63.3
Prupe.7G122300 Prunus persica HOM05D003167 ORTHO05D003929 2.6e-53 213.0 163 68.7
Glyma.19G188800 Glycine max HOM05D003167 ORTHO05D003929 3.3e-53 212.6 179 62.0
vmacro07353 Vaccinium macrocarpon HOM05D003167 ORTHO05D003929 3.3e-53 212.6 162 69.1
Ah.15g091340 Amaranthus hybridus HOM05D003167 ORTHO05D003929 4.4e-53 212.2 159 69.8
CARHR003250 Cardamine hirsuta HOM05D003167 ORTHO05D003929 4.4e-53 212.2 180 63.9
Lalb_Chr21g0315291 Lupinus albus HOM05D003167 ORTHO05D003929 4.4e-53 212.2 179 62.0
Medtr1g061860 Medicago truncatula HOM05D003167 ORTHO05D003929 4.4e-53 212.2 179 62.0
Phvul.001G184000 Phaseolus vulgaris HOM05D003167 ORTHO05D003929 4.4e-53 212.2 179 62.0
SalBow8G1467 Salvia bowleyana HOM05D003167 ORTHO05D003929 4.4e-53 212.2 171 66.7
SalBow8G3947 Salvia bowleyana HOM05D003167 ORTHO05D003929 4.4e-53 212.2 171 66.7
Atru.chr8.1695 Acer truncatum HOM05D003167 ORTHO05D003929 5.7e-53 211.8 168 66.7
Aa31LG1G9100 Aethionema arabicum HOM05D003167 ORTHO05D003929 5.7e-53 211.8 180 63.9
AL1G13510 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 5.7e-53 211.8 180 63.9
AT1G03910 Arabidopsis thaliana HOM05D003167 ORTHO05D003929 5.7e-53 211.8 180 63.9
Carub.0001s0306 Capsella rubella HOM05D003167 ORTHO05D003929 5.7e-53 211.8 180 63.9
A10p02430 Brassica napus HOM05D003167 ORTHO05D003929 7.4e-53 211.5 163 68.7
Carub.0004s1866 Capsella rubella HOM05D003167 ORTHO05D003929 7.4e-53 211.5 175 65.7
Ca_08942_v3 Cicer arietinum L. HOM05D003167 ORTHO05D003929 7.4e-53 211.5 179 62.0
Thhalv10006994m.g Eutrema salsugineum HOM05D003167 ORTHO05D003929 7.4e-53 211.5 180 63.9
Sp1g02770 Schrenkiella parvula HOM05D003167 ORTHO05D003929 7.4e-53 211.5 163 68.7
THA.LOC104816364 Tarenaya hassleriana HOM05D003167 ORTHO05D003929 7.4e-53 211.5 217 57.6
ECA238G2918 Erigeron canadensis HOM05D003167 ORTHO05D003929 1.7e-52 210.3 180 62.2
Glyma.03G188600 Glycine max HOM05D003167 ORTHO05D003929 2.2e-52 209.9 179 61.5
C05p02250 Brassica napus HOM05D003167 ORTHO05D003929 2.8e-52 209.5 163 68.1
BolC5t29003H Brassica oleracea HOM05D003167 ORTHO05D003929 2.8e-52 209.5 163 68.1
Lalb_Chr25g0288761 Lupinus albus HOM05D003167 ORTHO05D003929 2.8e-52 209.5 174 63.2
VMungo1383G0302 Vigna mungo HOM05D003167 ORTHO05D003929 2.8e-52 209.5 179 61.5
MD14G1096200 Malus domestica HOM05D003167 ORTHO05D003929 3.7e-52 209.1 182 63.2
PSO339G0841 Papaver somniferum HOM05D003167 ORTHO05D003929 4.8e-52 208.8 181 61.3
SMO169G0108 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 6.3e-52 208.4 165 64.8
BcaC07g42222 Brassica carinata HOM05D003167 ORTHO05D003929 1.1e-51 207.6 163 67.5
HanXRQChr11g0325191 Helianthus annuus HOM05D003167 ORTHO05D003929 1.1e-51 207.6 180 62.8
Oeu027192.1 Olea europaea HOM05D003167 ORTHO05D003929 1.1e-51 207.6 154 69.5
Peaxi162Scf00732g00028 Petunia axillaris HOM05D003167 ORTHO05D003929 1.1e-51 207.6 192 60.9
SEGI_34935 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 1.1e-51 207.6 215 54.4
A09p68130 Brassica napus HOM05D003167 ORTHO05D003929 1.4e-51 207.2 163 67.5
C08p52570 Brassica napus HOM05D003167 ORTHO05D003929 1.4e-51 207.2 163 67.5
BolC8t52784H Brassica oleracea HOM05D003167 ORTHO05D003929 1.4e-51 207.2 163 67.5
BraA09t42148Z Brassica rapa HOM05D003167 ORTHO05D003929 1.4e-51 207.2 163 67.5
Lsat_1_v5_gn_2_23140 Lactuca sativa HOM05D003167 ORTHO05D003929 1.4e-51 207.2 163 66.9
CAN.G738.3 Capsicum annuum HOM05D003167 ORTHO05D003929 1.8e-51 206.8 163 66.3
DCAR_020795 Daucus carota HOM05D003167 ORTHO05D003929 2.4e-51 206.5 181 63.0
Mapoly0001s0156 Marchantia polymorpha HOM05D003167 ORTHO05D003929 2.4e-51 206.5 185 60.5
Peaxi162Scf01089g10011 Petunia axillaris HOM05D003167 ORTHO05D003929 2.4e-51 206.5 163 66.9
QL10p005646 Quercus lobata HOM05D003167 ORTHO05D003929 2.4e-51 206.5 235 49.4
Solyc10g085410.3 Solanum lycopersicum HOM05D003167 ORTHO05D003929 2.4e-51 206.5 163 66.3
Sopen10g034860 Solanum pennellii HOM05D003167 ORTHO05D003929 2.4e-51 206.5 163 66.3
Pp3c27_420 Physcomitrium patens HOM05D003167 ORTHO05D003929 3.1e-51 206.1 185 60.0
Migut.G00710 Erythranthe guttata HOM05D003167 ORTHO05D003929 4.1e-51 205.7 162 67.3
ATR0724G050 Amborella trichopoda HOM05D003167 ORTHO05D003929 5.3e-51 205.3 209 56.0
PGSC0003DMG400040194 Solanum tuberosum HOM05D003167 ORTHO05D003929 5.3e-51 205.3 163 66.3
SGA_v2.0_scaffold312G48279 Striga asiatica HOM05D003167 ORTHO05D003929 7.0e-51 204.9 158 67.1
Nitab4.5_0002027g0020 Nicotiana tabacum HOM05D003167 ORTHO05D003929 9.1e-51 204.5 179 60.9
AL4G33010 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 2.0e-50 203.4 163 68.1
Thecc.06G013600 Theobroma cacao HOM05D003167 ORTHO05D003929 2.0e-50 203.4 180 63.3
ECA232G4074 Erigeron canadensis HOM05D003167 ORTHO05D003929 2.6e-50 203.0 181 59.7
SHI27742 Sapria himalayana HOM05D003167 ORTHO05D003929 4.5e-50 202.2 164 65.9
AUR62018820 Chenopodium quinoa HOM05D003167 ORTHO05D003929 5.9e-50 201.8 184 60.9
Hma1.2p1_2996F.1_g331470 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 1.3e-49 200.7 155 67.1
Thecc.08G192100 Theobroma cacao HOM05D003167 ORTHO05D003929 1.7e-49 200.3 429 36.4
PSO210G0575 Papaver somniferum HOM05D003167 ORTHO05D003929 2.9e-49 199.5 164 64.6
Hma1.2p1_0033F.1_g020920 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 1.1e-48 197.6 155 66.5
AUR62007183 Chenopodium quinoa HOM05D003167 ORTHO05D003929 2.5e-48 196.4 184 59.8
AUR62007182 Chenopodium quinoa HOM05D003167 ORTHO05D003929 4.2e-48 195.7 184 59.8
SEGI_27063 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 4.2e-48 195.7 156 64.7
Lj8P306T56 Lonicera japonica HOM05D003167 ORTHO05D003929 2.1e-47 193.4 135 69.6
Aqoxy3G01485 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 2.7e-47 193.0 185 56.2
SMO364G0524 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 3.6e-47 192.6 137 67.9
CARHR131270 Cardamine hirsuta HOM05D003167 ORTHO05D003929 4.7e-47 192.2 129 67.4
BcaNung06144 Brassica carinata HOM05D003167 ORTHO05D003929 1.1e-45 187.6 149 64.4
FvH4_1g06450 Fragaria vesca HOM05D003167 ORTHO05D003929 1.1e-45 187.6 171 55.6
FAN19G3088 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.1e-45 187.6 171 55.6
Atru.chr10.2404 Acer truncatum HOM05D003167 ORTHO05D003929 1.5e-45 187.2 138 66.7
RcHm_v2.0_Chr2g0092191 Rosa chinensis HOM05D003167 ORTHO05D003929 1.5e-45 187.2 220 49.1
FAN23G0551 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.0e-45 186.8 201 50.7
Cc04_g07780 Coffea canephora HOM05D003167 ORTHO05D003929 4.4e-45 185.7 157 63.1
HPP92_017793 Vanilla planifolia HOM05D003167 ORTHO05D003929 5.7e-45 185.3 160 63.8
FAN26G0867 Fragaria x ananassa HOM05D003167 ORTHO05D003929 9.7e-45 184.5 186 50.5
FAN26G2184 Fragaria x ananassa HOM05D003167 ORTHO05D003929 9.7e-45 184.5 186 50.5
Cre09.g398650 Chlamydomonas reinhardtii HOM05D003167 ORTHO05D003929 1.3e-44 184.1 173 54.9
AUR62022073 Chenopodium quinoa HOM05D003167 ORTHO05D003929 2.2e-44 183.3 153 58.8
AUR62022074 Chenopodium quinoa HOM05D003167 ORTHO05D003929 2.2e-44 183.3 153 58.8
Aqoxy3G01613 Aquilegia oxysepala HOM05D003167 ORTHO05D000007 1.1e-43 181.0 135 65.2
FAN28G1035 Fragaria x ananassa HOM05D003167 ORTHO05D003929 7.7e-42 174.9 164 54.3
Lj1P1240T21 Lonicera japonica HOM05D003167 ORTHO05D003929 3.2e-40 169.5 125 65.6
Cfa022090 Carpinus fangiana HOM05D003167 ORTHO05D003929 1.2e-37 161.0 167 49.1
EL10Ac3g06890 Beta vulgaris HOM05D003167 ORTHO05D003929 2.0e-37 160.2 152 58.6
AagrBONN_evm.TU.Sc2ySwM_344.2239 Anthoceros agrestis HOM05D003167 ORTHO05D003929 1.8e-35 153.7 134 61.9
MD12G1102100 Malus domestica HOM05D003167 ORTHO05D003929 1.8e-35 153.7 166 54.2
Glyma.13G148300 Glycine max HOM05D003167 ORTHO05D003929 5.3e-35 152.1 144 56.2
PRCOL_00002534 Prasinoderma coloniale HOM05D003167 ORTHO05D003929 1.2e-34 151.0 169 49.1
Rhsim03G0085500 Rhododendron simsii HOM05D003167 ORTHO05D003929 1.6e-34 150.6 125 67.2
FAN19G0600 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.0e-34 150.2 107 62.6
unitig_578.g16659 Utricularia gibba HOM05D003167 ORTHO05D003929 9.4e-32 141.4 163 52.1
CBR_g4119 Chara braunii HOM05D003167 ORTHO05D003929 1.2e-31 141.0 173 50.9
Eucgr.D02277 Eucalyptus grandis HOM05D003167 ORTHO05D003929 4.4e-29 132.5 167 50.9
FAN23G2272 Fragaria x ananassa HOM05D003167 ORTHO05D003929 7.5e-29 131.7 122 51.6
Os04g0558200 Oryza sativa ssp. japonica HOM05D003167 ORTHO05D003929 2.8e-28 129.8 93 63.4
Actinidia26630 Actinidia chinensis HOM05D003167 ORTHO05D003929 5.9e-26 122.1 98 67.3
CAN.G1459.3 Capsicum annuum HOM05D003167 ORTHO05D003929 1.3e-25 120.9 140 50.0
Hma1.2p1_2596F.1_g325110 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 8.9e-22 108.2 206 38.3
BcaNung00709 Brassica carinata HOM05D003167 ORTHO05D003929 1.2e-21 107.8 79 67.1
QL10p008780 Quercus lobata HOM05D003167 ORTHO05D033269 2.0e-21 107.1 224 35.7
Nitab4.5_0000883g0040 Nicotiana tabacum HOM05D003167 ORTHO05D003929 1.4e-19 100.9 92 59.8
COL.COLO4_17620 Corchorus olitorius HOM05D003167 ORTHO05D003929 1.0e-17 94.7 113 54.0
Ah.15g091330 Amaranthus hybridus HOM05D003167 ORTHO05D003929 3.9e-17 92.8 83 60.2
Cc00_g14960 Coffea canephora HOM05D003167 ORTHO05D003929 3.3e-16 89.7 83 59.0
Cc00_g14970 Coffea canephora HOM05D003167 ORTHO05D003929 4.3e-16 89.4 83 59.0
Nitab4.5_0007768g0040 Nicotiana tabacum HOM05D003167 ORTHO05D003929 4.7e-15 85.9 169 36.7
CARHR003240 Cardamine hirsuta HOM05D003167 ORTHO05D003929 1.0e-14 84.7 83 60.2
ECA232G4802 Erigeron canadensis HOM05D003167 ORTHO05D003929 6.8e-14 82.0 83 55.4
BcaC05g24486 Brassica carinata HOM05D003167 ORTHO05D003929 2.0e-13 80.5 89 53.9
C07p61860 Brassica napus HOM05D003167 ORTHO05D033269 4.4e-13 79.3 48 72.9
Sc01g0003900 Simmondsia chinensis HOM05D003167 ORTHO05D003929 5.8e-13 79.0 72 59.7
Rhsim10G0051300 Rhododendron simsii HOM05D000001 ORTHO05D009071 1.3e-12 77.8 56 66.1
Os03g0800100 Oryza sativa ssp. japonica HOM05D003167 ORTHO05D003929 7.0e-11 72.0 132 43.2
Oeu005667.1 Olea europaea HOM05D003167 ORTHO05D003929 1.2e-10 71.2 71 62.0
Atru.chr10.1911 Acer truncatum HOM05D003167 ORTHO05D003929 2.0e-10 70.5 83 51.8
SEGI_06196 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 2.0e-10 70.5 45 73.3
SEGI_13117 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 2.0e-10 70.5 45 73.3
Oeu026917.1 Olea europaea HOM05D003167 ORTHO05D003929 3.9e-09 66.2 34 88.2
Zm00001eb382350 Zea mays HOM05D003167 ORTHO05D003929 1.6e-07 60.8 71 53.5
Rhsim03G0079100 Rhododendron simsii HOM05D003167 ORTHO05D003929 2.8e-07 60.1 35 74.3
Atru.chr10.2405 Acer truncatum HOM05D003167 ORTHO05D003929 6.2e-07 58.9 59 54.2
PGR083G2067 Punica granatum HOM05D003167 ORTHO05D003929 1.1e-06 58.2 78 44.9


User provided reference genes

Program Settings