Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_36183 Corchorus olitorius HOM05D007453 ORTHO05D009223 3.3e-91 338.6 198 100.0
Thecc.02G232500 Theobroma cacao HOM05D007453 ORTHO05D009223 3.9e-76 288.5 198 86.9
Duzib248G0401 Durio zibethinus HOM05D007453 ORTHO05D009223 2.1e-74 282.7 198 77.3
Gohir.D05G323400 Gossypium hirsutum HOM05D007453 ORTHO05D009223 1.5e-72 276.6 198 74.2
Gorai.009G347100 Gossypium raimondii HOM05D007453 ORTHO05D009223 4.9e-71 271.6 198 83.3
Duzib251G0796 Durio zibethinus HOM05D007453 ORTHO05D009223 1.9e-70 269.6 198 83.3
Duzib248G0483 Durio zibethinus HOM05D007453 ORTHO05D009223 3.2e-70 268.9 198 80.8
Prupe.1G267100 Prunus persica HOM05D007453 ORTHO05D009223 5.3e-65 251.5 204 72.5
QL03p065949 Quercus lobata HOM05D007453 ORTHO05D009223 2.6e-64 249.2 204 67.6
CiPaw.05G140500 Carya illinoinensis HOM05D007453 ORTHO05D009223 1.3e-63 246.9 200 69.0
Manes.05G095900 Manihot esculenta HOM05D007453 ORTHO05D009223 1.3e-63 246.9 199 79.9
Ciclev10032837m.g Citrus clementina HOM05D007453 ORTHO05D009223 2.2e-63 246.1 198 70.2
Gohir.A05G321200 Gossypium hirsutum HOM05D007453 ORTHO05D009223 6.5e-63 244.6 147 84.4
Atru.chr11.1862 Acer truncatum HOM05D007453 ORTHO05D009223 1.9e-62 243.0 192 81.8
TWI75G0120 Tripterygium wilfordii HOM05D007453 ORTHO05D009223 2.5e-62 242.7 200 68.5
Cfa009043 Carpinus fangiana HOM05D007453 ORTHO05D009223 5.5e-62 241.5 199 67.8
Lalb_Chr10g0097941 Lupinus albus HOM05D007453 ORTHO05D009223 5.5e-62 241.5 200 67.5
Ca_07373_v3 Cicer arietinum L. HOM05D007453 ORTHO05D009223 1.6e-61 240.0 199 67.8
TPR.G29466 Trifolium pratense HOM05D007453 ORTHO05D009223 5.1e-60 235.0 200 67.0
Medtr5g038225 Medicago truncatula HOM05D007453 ORTHO05D009223 8.7e-60 234.2 199 70.4
VMungo1215G3437 Vigna mungo HOM05D007453 ORTHO05D009223 3.3e-59 232.3 200 66.5
Lj2g0026857 Lotus japonicus HOM05D007453 ORTHO05D009223 6.3e-58 228.0 200 65.5
PGR119G1700 Punica granatum HOM05D007453 ORTHO05D009223 8.2e-58 227.6 204 63.7
Psat2g125360 Pisum sativum HOM05D007453 ORTHO05D009223 2.4e-57 226.1 200 65.5
Glyma.01G041651 Glycine max HOM05D007453 ORTHO05D009223 6.9e-57 224.6 200 65.5
CsaV3_5G032280 Cucumis sativus L. HOM05D007453 ORTHO05D009223 1.5e-56 223.4 198 63.6
Phvul.002G067300 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 4.5e-56 221.9 199 63.3
Cpa.g.sc1379.2 Carica papaya HOM05D007453 ORTHO05D009223 7.6e-56 221.1 204 62.3
arahy.Tifrunner.gnm1.ann1.QA8CWD Arachis hypogaea HOM05D007453 ORTHO05D009223 1.0e-55 220.7 200 64.0
MD13G1079700 Malus domestica HOM05D007453 ORTHO05D009223 1.0e-55 220.7 210 63.8
Haze_12073 Corylus avellana HOM05D007453 ORTHO05D009223 1.3e-55 220.3 228 58.3
arahy.Tifrunner.gnm1.ann1.D3ZUUX Arachis hypogaea HOM05D007453 ORTHO05D009223 6.5e-55 218.0 200 63.5
Dinv24949 Davidia involucrata HOM05D007453 ORTHO05D009223 1.4e-54 216.9 198 61.6
Sabra10G0030300 Salix brachista HOM05D007453 ORTHO05D009223 1.4e-54 216.9 152 74.3
Eucgr.B03407 Eucalyptus grandis HOM05D007453 ORTHO05D009223 3.2e-54 215.7 203 72.9
Glyma.02G022351 Glycine max HOM05D007453 ORTHO05D009223 4.2e-54 215.3 148 75.7
Potri.010G034500 Populus trichocarpa HOM05D007453 ORTHO05D009223 1.6e-53 213.4 201 70.1
Actinidia08212 Actinidia chinensis HOM05D007453 ORTHO05D009223 4.6e-53 211.8 198 56.6
FAN22G0202 Fragaria x ananassa HOM05D007453 ORTHO05D009223 6.1e-53 211.5 205 62.0
MELO3C012060.2 Cucumis melo HOM05D007453 ORTHO05D009223 1.0e-52 210.7 198 63.1
FvH4_4g32080 Fragaria vesca HOM05D007453 ORTHO05D009223 1.0e-52 210.7 205 61.0
FAN07G0059 Fragaria x ananassa HOM05D007453 ORTHO05D009223 1.3e-52 210.3 205 60.0
AT1G27050 Arabidopsis thaliana HOM05D007453 ORTHO05D009223 3.9e-52 208.8 207 58.0
Thhalv10008803m.g Eutrema salsugineum HOM05D007453 ORTHO05D009223 3.9e-52 208.8 204 61.3
RcHm_v2.0_Chr4g0440771 Rosa chinensis HOM05D007453 ORTHO05D009223 1.1e-51 207.2 207 61.4
Aa31LG7G8100 Aethionema arabicum HOM05D007453 ORTHO05D009223 1.6e-50 203.4 217 56.7
TAR481G0010 Trochodendron aralioides HOM05D007453 ORTHO05D009223 6.3e-50 201.4 200 57.5
Sed0013591 Sechium edule HOM05D007453 ORTHO05D009223 8.2e-50 201.1 208 62.5
AL1G38440 Arabidopsis lyrata HOM05D007453 ORTHO05D009223 1.1e-49 200.7 207 56.0
ClCG05G024650 Citrullus lanatus HOM05D007453 ORTHO05D009223 1.4e-49 200.3 191 63.4
Sp1g21730 Schrenkiella parvula HOM05D007453 ORTHO05D009223 4.1e-49 198.7 209 55.5
HanXRQChr17g0544601 Helianthus annuus HOM05D007453 ORTHO05D009223 6.9e-49 198.0 208 53.8
vmacro16323 Vaccinium macrocarpon HOM05D007453 ORTHO05D009223 6.9e-49 198.0 201 58.2
Actinidia19855 Actinidia chinensis HOM05D007453 ORTHO05D009223 1.2e-48 197.2 198 55.1
BcaC06g35095 Brassica carinata HOM05D007453 ORTHO05D009223 1.2e-48 197.2 205 57.1
CSS0012607 Camellia sinensis var. sinensis HOM05D007453 ORTHO05D009223 1.5e-48 196.8 202 58.9
Phvul.002G077900 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 2.6e-48 196.1 151 68.2
C07p19880 Brassica napus HOM05D007453 ORTHO05D009223 7.7e-48 194.5 205 56.6
BolC7t42507H Brassica oleracea HOM05D007453 ORTHO05D009223 7.7e-48 194.5 205 56.6
Carub.0001s2392 Capsella rubella HOM05D007453 ORTHO05D009223 1.3e-47 193.7 209 65.1
ECA246G4987 Erigeron canadensis HOM05D007453 ORTHO05D009223 2.2e-47 193.0 217 53.9
Hund05917 Selenicereus undatus HOM05D007453 ORTHO05D009223 2.2e-47 193.0 198 64.1
GSVIVG01020080001 Vitis vinifera HOM05D007453 ORTHO05D009223 2.2e-47 193.0 198 59.1
CARHR024860 Cardamine hirsuta HOM05D007453 ORTHO05D009223 2.9e-47 192.6 208 54.8
BcaB03g14102 Brassica carinata HOM05D007453 ORTHO05D009223 3.8e-47 192.2 208 55.3
DCAR_031058 Daucus carota HOM05D007453 ORTHO05D009223 2.1e-45 186.4 207 55.1
THA.LOC104822931 Tarenaya hassleriana HOM05D007453 ORTHO05D009223 3.6e-45 185.7 206 53.9
Cc11_g13560 Coffea canephora HOM05D007453 ORTHO05D009223 1.0e-44 184.1 223 52.0
Lsat_1_v5_gn_3_49860 Lactuca sativa HOM05D007453 ORTHO05D009223 1.0e-44 184.1 182 56.0
CiPaw.06G080300 Carya illinoinensis HOM05D007453 ORTHO05D009223 3.0e-44 182.6 161 63.4
PGSC0003DMG400017639 Solanum tuberosum HOM05D007453 ORTHO05D009223 2.0e-43 179.9 209 50.2
Solyc05g006960.3 Solanum lycopersicum HOM05D007453 ORTHO05D009223 7.4e-43 177.9 209 49.8
Sopen05g002920 Solanum pennellii HOM05D007453 ORTHO05D009223 7.4e-43 177.9 209 49.8
EL10Ac6g13141 Beta vulgaris HOM05D007453 ORTHO05D009223 9.7e-43 177.6 207 59.4
A07p13280 Brassica napus HOM05D007453 ORTHO05D009223 1.3e-42 177.2 199 56.3
FAN12G0628 Fragaria x ananassa HOM05D007453 ORTHO05D009223 1.3e-42 177.2 205 54.6
MSTRG.13399 Avicennia marina HOM05D007453 ORTHO05D009223 1.7e-42 176.8 213 49.3
BraA07t29098Z Brassica rapa HOM05D007453 ORTHO05D009223 3.7e-42 175.6 199 56.3
Nitab4.5_0000679g0070 Nicotiana tabacum HOM05D007453 ORTHO05D009223 3.1e-41 172.6 229 48.0
Rhsim12G0129600 Rhododendron simsii HOM05D007453 ORTHO05D009223 4.1e-41 172.2 252 46.0
SalBow8G2121 Salvia bowleyana HOM05D007453 ORTHO05D009223 2.0e-40 169.9 217 53.0
Migut.E00119 Erythranthe guttata HOM05D007453 ORTHO05D009223 3.8e-39 165.6 224 52.7
Nitab4.5_0002969g0020 Nicotiana tabacum HOM05D007453 ORTHO05D009223 9.4e-38 161.0 229 54.1
SGA_v2.0_scaffold87G26973 Striga asiatica HOM05D007453 ORTHO05D009223 4.7e-37 158.7 219 45.7
MSTRG.2362 Avicennia marina HOM05D007453 ORTHO05D009223 1.4e-36 157.1 218 47.2
MBI01_g12858_MAGBIO Magnolia biondii HOM05D007453 ORTHO05D009223 2.3e-36 156.4 196 46.4
Sc11g0001650 Simmondsia chinensis HOM05D007453 ORTHO05D009223 3.0e-36 156.0 204 57.4
unitig_62.g23683 Utricularia gibba HOM05D007453 ORTHO05D009223 8.8e-36 154.5 211 46.4
PSO832G2667 Papaver somniferum HOM05D007453 ORTHO05D009223 3.3e-35 152.5 211 44.5
PSO591G0176 Papaver somniferum HOM05D007453 ORTHO05D009223 4.4e-35 152.1 214 43.9
Aqoxy3G03257 Aquilegia oxysepala HOM05D007453 ORTHO05D009223 1.8e-33 146.7 148 54.7
Peaxi162Scf00209g00516 Petunia axillaris HOM05D007453 ORTHO05D009223 2.5e-30 136.3 215 53.0
ATR0665G072 Amborella trichopoda HOM05D007453 ORTHO05D009223 9.4e-30 134.4 199 44.2
CDE05G3569 Ceratophyllum demersum HOM05D007453 ORTHO05D009223 9.4e-30 134.4 199 40.2
HPP92_001648 Vanilla planifolia HOM05D007453 ORTHO05D009223 2.3e-28 129.8 151 49.0
AUR62026455 Chenopodium quinoa HOM05D007453 ORTHO05D009223 5.2e-28 128.6 122 71.3
Dinv40682 Davidia involucrata HOM05D007453 ORTHO05D009223 3.3e-27 125.9 133 57.1
AUR62026264 Chenopodium quinoa HOM05D007453 ORTHO05D009223 1.1e-25 120.9 134 64.9
Lj6C173T12 Lonicera japonica HOM05D007453 ORTHO05D009223 6.5e-23 111.7 115 55.7
A07p13630 Brassica napus HOM05D007453 ORTHO05D009223 2.3e-20 103.2 124 52.4
Nn4g23028 Nelumbo nucifera HOM05D007453 ORTHO05D009223 1.1e-17 94.4 84 59.5
HPP92_001630 Vanilla planifolia HOM05D007453 ORTHO05D009223 5.4e-17 92.0 95 53.7
Lj6C173T11 Lonicera japonica HOM05D007453 ORTHO05D009223 3.2e-14 82.8 90 53.3
Pp3c14_1800 Physcomitrium patens HOM05D030917 ORTHO05D009223 2.4e-09 66.6 156 28.2


User provided reference genes

Program Settings