Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 2.6e-83 312.0 157 100.0
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.9e-66 255.4 179 74.3
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.9e-66 255.4 179 74.3
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 6.5e-66 254.2 179 73.7
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 8.4e-66 253.8 179 73.7
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.9e-65 252.7 179 72.6
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 4.2e-65 251.5 183 72.1
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 5.5e-65 251.1 179 73.2
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 5.5e-65 251.1 179 73.7
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 2.8e-61 238.8 179 70.9
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 3.1e-52 208.8 179 62.0
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 5.3e-52 208.0 185 58.9
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 1.4e-49 199.9 175 57.7
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 4.2e-49 198.4 177 57.1
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 1.2e-48 196.8 157 59.2
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 1.6e-48 196.4 177 57.1
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.1e-48 196.1 157 58.6
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 4.6e-48 194.9 174 58.0
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 1.0e-47 193.7 178 56.7
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.4e-47 193.4 180 56.7
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 1.8e-47 193.0 174 58.6
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.3e-47 192.6 185 55.1
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 3.0e-47 192.2 177 55.4
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 3.0e-47 192.2 166 58.4
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 3.0e-47 192.2 177 55.4
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.9e-47 191.8 178 55.6
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 6.7e-47 191.0 177 52.5
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.5e-46 189.9 174 58.6
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 3.3e-46 188.7 175 54.3
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 3.3e-46 188.7 185 56.8
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 7.4e-46 187.6 176 58.0
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 9.7e-46 187.2 176 56.8
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 1.7e-45 186.4 177 56.5
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 2.2e-45 186.0 179 56.4
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 2.8e-45 185.7 179 53.6
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 3.7e-45 185.3 175 53.1
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 4.8e-45 184.9 177 53.7
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 6.3e-45 184.5 179 54.7
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 1.1e-44 183.7 176 54.0
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 1.4e-44 183.3 178 53.9
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 1.4e-44 183.3 177 54.8
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 2.4e-44 182.6 180 53.3
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 3.1e-44 182.2 178 51.7
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 3.1e-44 182.2 178 54.5
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 4.1e-44 181.8 179 55.3
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 6.9e-44 181.0 175 52.6
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 1.5e-43 179.9 175 52.6
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 2.6e-43 179.1 175 57.7
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 3.4e-43 178.7 181 54.1
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 7.7e-43 177.6 172 51.7
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 7.7e-43 177.6 179 52.5
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 1.0e-42 177.2 189 50.3
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 1.3e-42 176.8 177 50.8
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 1.3e-42 176.8 175 51.4
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 2.2e-42 176.0 174 53.4
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 2.9e-42 175.6 176 54.0
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 5.0e-42 174.9 176 54.0
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 5.0e-42 174.9 177 53.1
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 1.4e-41 173.3 177 52.5
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 9.4e-41 170.6 178 51.1
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 9.4e-41 170.6 177 48.6
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.7e-40 169.1 189 52.4
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 4.7e-40 168.3 206 47.6
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 6.1e-40 167.9 179 50.3
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 7.9e-40 167.5 176 49.4
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 7.9e-40 167.5 178 50.6
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.0e-39 167.2 176 51.1
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.0e-39 167.2 178 50.0
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.8e-39 166.4 176 51.1
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 3.9e-39 165.2 146 59.6
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 8.8e-39 164.1 176 50.0
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 1.5e-38 163.3 176 47.7
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 1.5e-38 163.3 176 47.7
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 3.7e-37 158.7 170 48.2
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 4.8e-37 158.3 178 47.2
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.1e-36 157.1 165 49.1
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.1e-36 157.1 173 49.1
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 1.4e-36 156.8 175 49.1
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 2.4e-36 156.0 179 48.0
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 4.1e-36 155.2 175 48.0
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 1.2e-35 153.7 175 48.0
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.6e-35 153.3 145 54.5
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 2.0e-35 152.9 178 46.6
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 2.6e-35 152.5 181 45.9
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 5.9e-35 151.4 145 51.7
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.0e-34 150.6 140 56.4
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 1.7e-34 149.8 186 47.8
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.8e-34 148.7 178 45.5
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 6.5e-34 147.9 150 52.7
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 3.2e-33 145.6 182 47.3
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.2e-33 145.2 185 48.6
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 4.2e-33 145.2 179 45.3
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 2.1e-32 142.9 149 51.0
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 2.7e-32 142.5 179 45.3
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 8.0e-32 141.0 143 55.9
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 2.3e-31 139.4 137 53.3
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 2.3e-31 139.4 148 48.6
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 2.0e-30 136.3 143 51.7
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 3.3e-30 135.6 140 53.6
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 7.5e-30 134.4 105 63.8
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 1.7e-29 133.3 141 47.5
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.7e-29 132.1 140 53.6
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.8e-28 129.8 181 43.1
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 1.8e-28 129.8 181 43.1
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 4.1e-28 128.6 153 48.4
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 4.1e-28 128.6 182 42.9
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 7.7e-27 124.4 196 40.3
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.0e-26 124.0 128 50.8
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 2.9e-26 122.5 186 37.1
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 1.1e-25 120.6 171 39.2
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 1.5e-25 120.2 191 40.3
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.5e-25 119.4 135 53.3
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.6e-24 116.7 132 47.0
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 2.1e-24 116.3 180 41.7
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 4.7e-24 115.2 155 41.9
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 4.7e-24 115.2 74 77.0
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 6.1e-24 114.8 114 53.5
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 6.1e-24 114.8 114 53.5
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.8e-23 113.2 143 44.1
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 5.7e-22 108.2 79 63.3
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 2.2e-21 106.3 156 42.9
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.7e-21 105.5 75 68.0
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 2.4e-20 102.8 158 39.9
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 3.1e-20 102.4 184 33.2
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 5.4e-20 101.7 156 38.5
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.6e-19 100.1 135 47.4
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 4.5e-19 98.6 190 33.7
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.5e-18 94.7 139 41.0
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 8.0e-16 87.8 148 41.9
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 5.7e-14 81.6 124 43.5
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 1.3e-13 80.5 157 33.8
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.2e-11 73.9 60 60.0
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 5.9e-11 71.6 74 44.6
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 2.5e-09 66.2 48 60.4
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 7.3e-09 64.7 80 43.8
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 9.5e-09 64.3 173 27.7
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.6e-06 56.2 76 40.8
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 5.8e-06 55.1 207 22.7


User provided reference genes

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