Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 1.3e-229 799.7 507 100.0
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 8.3e-155 551.2 508 76.8
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 1.1e-151 540.8 476 77.7
Gorai.006G225200 Gossypium raimondii HOM05D007897 ORTHO05D010061 3.1e-125 453.0 509 64.2
Gohir.D09G201400 Gossypium hirsutum HOM05D007897 ORTHO05D010061 4.4e-124 449.1 509 64.2
QL06p027281 Quercus lobata HOM05D007897 ORTHO05D010061 4.6e-105 386.0 511 61.4
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 7.3e-103 378.6 505 60.0
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 3.1e-101 373.2 509 58.9
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 5.3e-101 372.5 485 64.1
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 5.8e-100 369.0 484 63.8
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 5.8e-100 369.0 487 60.2
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 2.9e-99 366.7 439 61.5
TAR633G2792 Trochodendron aralioides HOM05D007897 ORTHO05D010061 7.1e-98 362.1 443 65.7
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 9.3e-98 361.7 444 64.4
Cpa.g.sc157.16 Carica papaya HOM05D007897 ORTHO05D010061 3.5e-97 359.8 508 58.9
Dinv32167 Davidia involucrata HOM05D007897 ORTHO05D010061 1.1e-95 354.8 452 61.9
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 5.6e-95 352.4 444 62.8
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 1.3e-94 351.3 448 60.7
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 2.4e-93 347.1 502 59.6
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 1.2e-92 344.7 471 61.6
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 2.6e-92 343.6 500 60.2
TAR633G2399 Trochodendron aralioides HOM05D007897 ORTHO05D010061 1.1e-90 338.2 491 58.2
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 2.4e-90 337.0 478 60.7
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 1.2e-89 334.7 480 60.6
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 7.9e-89 332.0 447 60.4
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 1.8e-88 330.9 473 55.0
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 2.3e-88 330.5 483 60.2
Gohir.A09G207900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 6.7e-88 328.9 233 71.2
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 2.5e-87 327.0 474 59.7
RcHm_v2.0_Chr4g0412521 Rosa chinensis HOM05D007897 ORTHO05D010061 2.5e-87 327.0 502 57.2
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 5.6e-87 325.9 507 56.0
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 2.1e-86 323.9 475 58.1
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 5.3e-85 319.3 474 55.5
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 6.9e-85 318.9 507 55.2
Glyma.11G253700 Glycine max HOM05D007897 ORTHO05D010061 4.5e-84 316.2 486 58.8
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 2.5e-82 310.5 492 44.9
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 7.1e-82 308.9 492 44.7
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 1.1e-77 295.0 371 69.0
AL7G42190 Arabidopsis lyrata HOM05D007897 ORTHO05D010061 5.3e-77 292.7 466 53.6
CARHR220230 Cardamine hirsuta HOM05D007897 ORTHO05D010061 6.9e-77 292.4 446 54.0
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 4.5e-76 289.7 447 60.6
Thhalv10027442m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 3.5e-73 280.0 442 54.3
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 1.3e-72 278.1 414 58.9
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 2.3e-72 277.3 449 56.6
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 6.7e-72 275.8 373 66.2
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 1.1e-71 275.0 377 64.7
AT4G14190 Arabidopsis thaliana HOM05D007897 ORTHO05D010061 2.5e-71 273.9 465 52.5
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 4.3e-71 273.1 478 50.6
BcaB08g35766 Brassica carinata HOM05D007897 ORTHO05D010061 8.2e-70 268.9 441 51.5
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 4.1e-69 266.5 183 67.8
Aa31LG9G3200 Aethionema arabicum HOM05D007897 ORTHO05D010061 1.4e-66 258.1 452 54.2
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 6.1e-65 252.7 455 51.0
HanXRQChr17g0535531 Helianthus annuus HOM05D007897 ORTHO05D010061 6.1e-65 252.7 460 50.7
Lsat_1_v5_gn_1_70121 Lactuca sativa HOM05D007897 ORTHO05D010061 1.8e-64 251.1 466 48.3
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 1.1e-63 248.4 485 46.2
C09p44340 Brassica napus HOM05D007897 ORTHO05D010061 2.0e-63 247.7 468 48.9
A10p11440 Brassica napus HOM05D007897 ORTHO05D010061 9.7e-63 245.4 460 50.0
Sp6g16180 Schrenkiella parvula HOM05D007897 ORTHO05D010061 2.2e-62 244.2 427 51.1
BraA10t43238Z Brassica rapa HOM05D007897 ORTHO05D010061 4.8e-62 243.0 460 49.6
BolC9t57304H Brassica oleracea HOM05D007897 ORTHO05D010061 3.4e-60 236.9 460 49.1
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 7.2e-58 229.2 364 63.2
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 9.4e-58 228.8 175 63.4
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 6.1e-57 226.1 378 57.7
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 3.1e-53 213.8 461 49.5
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 5.9e-52 209.5 166 61.4
BcaC04g20377 Brassica carinata HOM05D007897 ORTHO05D010061 1.0e-48 198.7 459 45.8
Manes.05G199032 Manihot esculenta HOM05D007897 ORTHO05D010061 5.7e-47 193.0 366 57.7
arahy.Tifrunner.gnm1.ann1.EZRM4Y Arachis hypogaea HOM05D007897 ORTHO05D010061 4.1e-45 186.8 350 61.7
Prupe.1G171300 Prunus persica HOM05D007897 ORTHO05D010061 1.4e-40 171.8 190 52.6
Gorai.001G135500 Gossypium raimondii HOM05D007897 ORTHO05D010061 1.2e-31 142.1 125 60.8
Gohir.D01G146401 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.1e-29 135.6 120 60.8
Gorai.002G182100 Gossypium raimondii HOM05D007897 ORTHO05D010061 3.5e-28 130.6 122 58.2
Gohir.D13G096925 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.1e-26 125.6 97 64.9
Gohir.D07G125650 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.6e-25 121.7 86 70.9
HanXRQChr09g0243521 Helianthus annuus HOM05D007897 ORTHO05D010061 4.6e-20 103.6 129 48.8
FAN22G1963 Fragaria x ananassa HOM05D007897 ORTHO05D010061 5.6e-18 96.7 131 48.1
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 5.6e-18 96.7 218 33.0
Gohir.D02G105900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 2.1e-17 94.7 53 77.4
Thhalv10027431m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 4.7e-17 93.6 84 57.1
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 6.2e-17 93.2 235 31.5
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 1.2e-15 89.0 218 32.6
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 2.6e-15 87.8 223 30.9
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 5.8e-15 86.7 223 30.5
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 7.5e-15 86.3 220 32.3
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 9.8e-15 85.9 235 29.8
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 1.3e-14 85.5 231 31.6
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 2.9e-14 84.3 237 29.1
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 2.9e-14 84.3 237 29.1
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 2.9e-14 84.3 237 29.1
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 3.7e-14 84.0 234 29.1
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 4.9e-14 83.6 225 30.2
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 4.9e-14 83.6 440 35.7
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 6.4e-14 83.2 218 31.2
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 8.3e-14 82.8 215 31.2
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 8.3e-14 82.8 235 29.8
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 8.3e-14 82.8 223 27.8
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 1.1e-13 82.4 225 30.2
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 1.4e-13 82.0 237 28.7
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.4e-13 82.0 215 31.2
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 1.4e-13 82.0 234 29.1
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 1.9e-13 81.6 226 29.6
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 2.4e-13 81.3 215 30.7
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 3.2e-13 80.9 431 30.2
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 4.1e-13 80.5 215 31.2
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 5.4e-13 80.1 218 29.4
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 7.0e-13 79.7 235 29.4
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 9.2e-13 79.3 218 29.4
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 1.2e-12 79.0 235 29.8
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 1.2e-12 79.0 219 30.1
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 2.0e-12 78.2 220 27.7
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 2.7e-12 77.8 194 32.0
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 6.0e-12 76.6 220 28.6
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 1.0e-11 75.9 215 29.3
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 1.0e-11 75.9 219 29.7
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 3.0e-11 74.3 216 28.2
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 3.0e-11 74.3 219 29.7
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 3.0e-11 74.3 219 29.7
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 3.0e-11 74.3 219 29.2
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 1.9e-10 71.6 178 32.6
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 3.3e-10 70.9 226 28.3
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 7.3e-10 69.7 165 28.5
A02p10540 Brassica napus HOM05D007897 ORTHO05D010061 1.2e-09 68.9 66 54.5
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 4.7e-09 67.0 194 28.4
Hund24443 Selenicereus undatus HOM05D007897 ORTHO05D010061 6.2e-09 66.6 83 43.4
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 2.6e-07 61.2 218 28.0
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 2.6e-07 61.2 98 36.7


User provided reference genes

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