Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_35933 Corchorus olitorius HOM05D000007 ORTHO05D044684 1.0e-87 326.6 157 100.0
Duzib116G0945 Durio zibethinus HOM05D000007 ORTHO05D000017 2.7e-24 115.9 134 50.0
Duzib041G0040 Durio zibethinus HOM05D000007 ORTHO05D000017 2.2e-21 106.3 134 47.8
Thecc.08G122500 Theobroma cacao HOM05D000007 ORTHO05D000017 2.2e-21 106.3 135 51.1
Thecc.01G095000 Theobroma cacao HOM05D000007 ORTHO05D000017 5.4e-20 101.7 137 46.7
Duzib160G0463 Durio zibethinus HOM05D000007 ORTHO05D000017 1.8e-12 76.6 98 42.9
Peaxi162Scf00231g00246 Petunia axillaris HOM05D000007 ORTHO05D000017 9.2e-12 74.3 119 38.7
Manes.09G077457 Manihot esculenta HOM05D000007 ORTHO05D000017 3.5e-11 72.4 98 43.9
RcHm_v2.0_Chr5g0001381 Rosa chinensis HOM05D000007 ORTHO05D000017 3.5e-11 72.4 121 33.9
Sc05g0008350 Simmondsia chinensis HOM05D000007 ORTHO05D000017 3.5e-11 72.4 113 38.1
Haze_06950 Corylus avellana HOM05D000007 ORTHO05D000017 4.5e-11 72.0 131 33.6
Prupe.4G009600 Prunus persica HOM05D000007 ORTHO05D000017 4.5e-11 72.0 131 33.6
Atru.chr1.2429 Acer truncatum HOM05D000007 ORTHO05D000017 7.8e-11 71.2 128 32.8
MD05G1358500 Malus domestica HOM05D000007 ORTHO05D000017 7.8e-11 71.2 127 31.5
Cfa000091 Carpinus fangiana HOM05D000007 ORTHO05D000017 1.0e-10 70.9 131 33.6
COL.COLO4_15716 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.0e-10 70.9 143 35.7
Gohir.D08G025866 Gossypium hirsutum HOM05D000007 ORTHO05D000017 1.0e-10 70.9 137 35.8
Gorai.004G021900 Gossypium raimondii HOM05D000007 ORTHO05D000017 1.0e-10 70.9 137 35.8
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.3e-10 70.5 144 35.4
MD10G1332600 Malus domestica HOM05D000007 ORTHO05D000017 1.3e-10 70.5 131 31.3
QL05p069347 Quercus lobata HOM05D000007 ORTHO05D000017 1.3e-10 70.5 122 36.9
Duzib192G0105 Durio zibethinus HOM05D000007 ORTHO05D000017 1.7e-10 70.1 98 40.8
Sabra06G0009400 Salix brachista HOM05D000007 ORTHO05D000017 1.7e-10 70.1 98 43.9
Potri.006G013000 Populus trichocarpa HOM05D000007 ORTHO05D000017 2.9e-10 69.3 98 41.8
Oeu009401.1 Olea europaea HOM05D000007 ORTHO05D000017 5.0e-10 68.6 109 41.3
Gohir.D08G025877 Gossypium hirsutum HOM05D000007 ORTHO05D000017 6.6e-10 68.2 137 32.8
Gorai.004G022000 Gossypium raimondii HOM05D000007 ORTHO05D000017 6.6e-10 68.2 137 32.8
Migut.J01305 Erythranthe guttata HOM05D000007 ORTHO05D000017 8.6e-10 67.8 140 31.4
Peaxi162Scf00231g00116 Petunia axillaris HOM05D000007 ORTHO05D000017 8.6e-10 67.8 133 36.8
CSS0002420 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 1.1e-09 67.4 120 35.8
CSS0024527 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 1.1e-09 67.4 120 35.0
COL.COLO4_31895 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.5e-09 67.0 97 42.3
CAN.G229.18 Capsicum annuum HOM05D000007 ORTHO05D000017 1.9e-09 66.6 96 38.5
FAN21G2540 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.5e-09 66.2 98 34.7
Gohir.A08G015500 Gossypium hirsutum HOM05D000007 ORTHO05D000017 2.5e-09 66.2 137 34.3
FAN25G3412 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.3e-09 65.9 98 34.7
Peaxi162Scf00009g02613 Petunia axillaris HOM05D000007 ORTHO05D000017 3.3e-09 65.9 131 35.9
Peaxi162Scf00231g00027 Petunia axillaris HOM05D000007 ORTHO05D000017 4.3e-09 65.5 143 32.2
Peaxi162Scf00231g00121 Petunia axillaris HOM05D000007 ORTHO05D000017 4.3e-09 65.5 131 35.9
AUR62014756 Chenopodium quinoa HOM05D000007 ORTHO05D000017 5.6e-09 65.1 139 32.4
Gorai.004G022100 Gossypium raimondii HOM05D000007 ORTHO05D000017 5.6e-09 65.1 148 31.1
FvH4_3g00900 Fragaria vesca HOM05D000007 ORTHO05D000017 7.3e-09 64.7 98 33.7
EL10As6g23636 Beta vulgaris HOM05D000007 ORTHO05D000017 9.5e-09 64.3 132 32.6
DCAR_019956 Daucus carota HOM05D000007 ORTHO05D000017 9.5e-09 64.3 135 35.6
vmacro04327 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 9.5e-09 64.3 129 31.8
Actinidia26854 Actinidia chinensis HOM05D000007 ORTHO05D000017 1.2e-08 63.9 132 34.1
Migut.A01050 Erythranthe guttata HOM05D000007 ORTHO05D000017 1.6e-08 63.5 99 37.4
Hma1.2p1_0377F.1_g139643 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 1.6e-08 63.5 98 42.9
Thecc.08G124100 Theobroma cacao HOM05D000007 ORTHO05D000017 2.1e-08 63.2 78 52.6
Oeu047068.1 Olea europaea HOM05D000007 ORTHO05D000017 2.8e-08 62.8 132 33.3
vmacro17342 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 2.8e-08 62.8 134 32.1
arahy.Tifrunner.gnm1.ann1.F3ZHRM Arachis hypogaea HOM05D000007 ORTHO05D000017 3.6e-08 62.4 113 32.7
CANSAT56G1762 Cannabis sativa HOM05D000007 ORTHO05D000017 3.6e-08 62.4 128 32.8
CiPaw.09G103200 Carya illinoinensis HOM05D000007 ORTHO05D000017 3.6e-08 62.4 98 33.7
AUR62014647 Chenopodium quinoa HOM05D000007 ORTHO05D000017 3.6e-08 62.4 133 32.3
Ciclev10013838m.g Citrus clementina HOM05D000007 ORTHO05D000017 3.6e-08 62.4 135 33.3
Migut.J01313 Erythranthe guttata HOM05D000007 ORTHO05D000017 3.6e-08 62.4 132 34.8
Gohir.D06G160200 Gossypium hirsutum HOM05D000007 ORTHO05D000017 3.6e-08 62.4 97 40.2
Lj2P689T8 Lonicera japonica HOM05D000007 ORTHO05D000017 3.6e-08 62.4 98 37.8
arahy.Tifrunner.gnm1.ann1.DDZ1HR Arachis hypogaea HOM05D000007 ORTHO05D000017 4.7e-08 62.0 113 32.7
CSS0004500 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 4.7e-08 62.0 131 31.3
CSS0046565 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 4.7e-08 62.0 131 31.3
Nitab4.5_0000097g0150 Nicotiana tabacum HOM05D000007 ORTHO05D000017 4.7e-08 62.0 99 39.4
Potri.006G012900 Populus trichocarpa HOM05D000007 ORTHO05D000017 4.7e-08 62.0 140 33.6
Cc09_g00810 Coffea canephora HOM05D000007 ORTHO05D000017 6.1e-08 61.6 129 37.2
Gorai.010G186900 Gossypium raimondii HOM05D000007 ORTHO05D000017 6.1e-08 61.6 97 40.2
Nitab4.5_0000271g0060 Nicotiana tabacum HOM05D000007 ORTHO05D000017 6.1e-08 61.6 132 35.6
Thecc.06G234200 Theobroma cacao HOM05D000007 ORTHO05D000017 6.1e-08 61.6 97 37.1
CANSAT56G1116 Cannabis sativa HOM05D000007 ORTHO05D000017 8.0e-08 61.2 131 35.9
Peaxi162Scf00009g02529 Petunia axillaris HOM05D000007 ORTHO05D000017 8.0e-08 61.2 136 33.8
Potri.001G035500 Populus trichocarpa HOM05D000007 ORTHO05D000017 8.0e-08 61.2 145 31.0
Migut.M01404 Erythranthe guttata HOM05D000007 ORTHO05D000017 1.0e-07 60.8 107 38.3
MSTRG.7163 Avicennia marina HOM05D000007 ORTHO05D000017 1.4e-07 60.5 131 35.9
DCAR_009419 Daucus carota HOM05D000007 ORTHO05D000017 1.4e-07 60.5 135 33.3
Migut.N00093 Erythranthe guttata HOM05D000007 ORTHO05D000017 1.4e-07 60.5 113 31.9
Gohir.A06G153400 Gossypium hirsutum HOM05D000007 ORTHO05D000017 1.4e-07 60.5 97 38.1
Hma1.2p1_0127F.1_g059580 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 1.4e-07 60.5 97 43.3
GSVIVG01026026001 Vitis vinifera HOM05D000007 ORTHO05D000017 1.4e-07 60.5 139 32.4
CANSAT56G0084 Cannabis sativa HOM05D000007 ORTHO05D000017 1.8e-07 60.1 131 35.9
Gohir.D08G025833 Gossypium hirsutum HOM05D000007 ORTHO05D000017 1.8e-07 60.1 148 29.7
Gorai.004G021100 Gossypium raimondii HOM05D000007 ORTHO05D000017 1.8e-07 60.1 137 30.7
Gorai.004G021600 Gossypium raimondii HOM05D000007 ORTHO05D000017 1.8e-07 60.1 135 31.1
Nitab4.5_0002184g0020 Nicotiana tabacum HOM05D000007 ORTHO05D019314 1.8e-07 60.1 97 40.2
Peaxi162Scf00009g02530 Petunia axillaris HOM05D000007 ORTHO05D000017 1.8e-07 60.1 136 33.8
vmacro03638 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 1.8e-07 60.1 101 35.6
CSS0042068 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 2.3e-07 59.7 105 33.3
DCAR_015334 Daucus carota HOM05D000007 ORTHO05D000017 2.3e-07 59.7 138 31.2
Sc05g0008360 Simmondsia chinensis HOM05D000007 ORTHO05D000017 2.3e-07 59.7 97 37.1
Dinv38200 Davidia involucrata HOM05D000007 ORTHO05D000017 3.0e-07 59.3 111 39.6
Gohir.A08G015164 Gossypium hirsutum HOM05D000007 ORTHO05D000017 3.0e-07 59.3 137 31.4
Gohir.A08G015200 Gossypium hirsutum HOM05D000007 ORTHO05D000017 3.0e-07 59.3 139 31.7
Gohir.D08G025733 Gossypium hirsutum HOM05D000007 ORTHO05D000017 3.0e-07 59.3 137 30.7
Gorai.004G021400 Gossypium raimondii HOM05D000007 ORTHO05D000017 3.0e-07 59.3 139 30.2
PSO210G5665 Papaver somniferum HOM05D000007 ORTHO05D000017 3.0e-07 59.3 140 31.4
PSO832G2356 Papaver somniferum HOM05D000007 ORTHO05D000017 3.0e-07 59.3 108 36.1
vmacro03637 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 3.0e-07 59.3 131 35.9
FAN09G3540 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.0e-07 58.9 154 30.5
SalBow1G2862 Salvia bowleyana HOM05D000007 ORTHO05D000017 4.0e-07 58.9 131 31.3
AUR62012551 Chenopodium quinoa HOM05D000007 ORTHO05D000017 5.2e-07 58.5 114 36.0
DCAR_004305 Daucus carota HOM05D000007 ORTHO05D000017 5.2e-07 58.5 96 33.3
AUR62010297 Chenopodium quinoa HOM05D000007 ORTHO05D000017 6.8e-07 58.2 141 31.9
AUR62016932 Chenopodium quinoa HOM05D000007 ORTHO05D000017 6.8e-07 58.2 102 37.3
Migut.J01307 Erythranthe guttata HOM05D000007 ORTHO05D000017 6.8e-07 58.2 114 31.6
Migut.J01308 Erythranthe guttata HOM05D000007 ORTHO05D000017 6.8e-07 58.2 114 31.6
Gohir.D08G025811 Gossypium hirsutum HOM05D000007 ORTHO05D000017 6.8e-07 58.2 139 29.5
Lsat_1_v5_gn_3_24620 Lactuca sativa HOM05D000007 ORTHO05D000017 6.8e-07 58.2 112 32.1
Peaxi162Scf00231g00013 Petunia axillaris HOM05D000007 ORTHO05D000017 6.8e-07 58.2 96 34.4
AUR62012552 Chenopodium quinoa HOM05D000007 ORTHO05D000017 8.9e-07 57.8 98 36.7
Cc06_g09830 Coffea canephora HOM05D000007 ORTHO05D000017 8.9e-07 57.8 101 36.6
Gohir.D08G025844 Gossypium hirsutum HOM05D000007 ORTHO05D000017 8.9e-07 57.8 135 31.9
Gorai.004G021700 Gossypium raimondii HOM05D000007 ORTHO05D000017 8.9e-07 57.8 135 31.9
TPR.G30455 Trifolium pratense HOM05D000007 ORTHO05D000017 8.9e-07 57.8 144 26.4
Ciclev10028697m.g Citrus clementina HOM05D000007 ORTHO05D000017 1.2e-06 57.4 143 32.9
Dinv11914 Davidia involucrata HOM05D000007 ORTHO05D000017 1.2e-06 57.4 97 39.2
FAN05G3599 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.2e-06 57.4 140 32.1
Lj2P693T12 Lonicera japonica HOM05D000007 ORTHO05D000017 1.2e-06 57.4 97 37.1
Lj2P928T12 Lonicera japonica HOM05D000007 ORTHO05D000017 1.2e-06 57.4 131 34.4
Lj2P943T5 Lonicera japonica HOM05D000007 ORTHO05D000017 1.2e-06 57.4 131 34.4
Dinv30807 Davidia involucrata HOM05D000007 ORTHO05D000017 1.5e-06 57.0 100 36.0
Dinv32031 Davidia involucrata HOM05D000007 ORTHO05D000017 1.5e-06 57.0 102 36.3
Migut.J01310 Erythranthe guttata HOM05D000007 ORTHO05D000017 1.5e-06 57.0 131 32.8
Migut.L00223 Erythranthe guttata HOM05D000007 ORTHO05D000017 1.5e-06 57.0 139 29.5
Migut.L00613 Erythranthe guttata HOM05D000007 ORTHO05D000017 1.5e-06 57.0 139 29.5
Lj2P695T9 Lonicera japonica HOM05D000007 ORTHO05D000017 1.5e-06 57.0 102 37.3
PGSC0003DMG400004709 Solanum tuberosum HOM05D000007 ORTHO05D000017 1.5e-06 57.0 113 31.0
Haze_25729 Corylus avellana HOM05D000007 ORTHO05D000017 2.0e-06 56.6 103 34.0
Lj2C692T0 Lonicera japonica HOM05D000007 ORTHO05D000017 2.0e-06 56.6 97 40.2
Oeu009398.1 Olea europaea HOM05D000007 ORTHO05D000017 2.0e-06 56.6 123 35.8
PSO170G3421 Papaver somniferum HOM05D000007 ORTHO05D000017 2.0e-06 56.6 111 32.4
AUR62012546 Chenopodium quinoa HOM05D000007 ORTHO05D000017 2.6e-06 56.2 100 35.0
Cc09_g00820 Coffea canephora HOM05D000007 ORTHO05D000017 2.6e-06 56.2 137 32.8
COL.COLO4_06115 Corchorus olitorius HOM05D000007 ORTHO05D000017 2.6e-06 56.2 134 31.3
COL.COLO4_07578 Corchorus olitorius HOM05D000007 ORTHO05D000017 2.6e-06 56.2 97 37.1
COL.COLO4_09399 Corchorus olitorius HOM05D000007 ORTHO05D000017 2.6e-06 56.2 143 28.7
Rhsim01G0117500 Rhododendron simsii HOM05D000007 ORTHO05D000017 2.6e-06 56.2 102 37.3
RcHm_v2.0_Chr1g0347321 Rosa chinensis HOM05D000007 ORTHO05D000017 2.6e-06 56.2 152 32.9
RcHm_v2.0_Chr2g0154571 Rosa chinensis HOM05D000007 ORTHO05D000017 2.6e-06 56.2 140 32.1
Atru.chr3.38 Acer truncatum HOM05D000007 ORTHO05D000017 3.4e-06 55.8 137 32.8
Migut.J01304 Erythranthe guttata HOM05D000007 ORTHO05D000017 3.4e-06 55.8 114 30.7
Gohir.A08G015180 Gossypium hirsutum HOM05D000007 ORTHO05D000017 3.4e-06 55.8 117 29.9
PSO063G7508 Papaver somniferum HOM05D000007 ORTHO05D000017 3.4e-06 55.8 138 28.3
PGR083G2787 Punica granatum HOM05D000007 ORTHO05D000017 3.4e-06 55.8 114 29.8
RcHm_v2.0_Chr1g0347171 Rosa chinensis HOM05D000007 ORTHO05D000017 3.4e-06 55.8 139 33.1
Ciclev10033971m.g Citrus clementina HOM05D000007 ORTHO05D000017 4.4e-06 55.5 135 29.6
ECA246G4363 Erigeron canadensis HOM05D000007 ORTHO05D000017 4.4e-06 55.5 138 26.8
FvH4_6g33751 Fragaria vesca HOM05D000007 ORTHO05D000017 4.4e-06 55.5 136 33.1
Medtr3g011020 Medicago truncatula HOM05D000007 ORTHO05D000017 4.4e-06 55.5 103 33.0
Medtr3g013770 Medicago truncatula HOM05D000007 ORTHO05D000017 4.4e-06 55.5 141 31.9
Peaxi162Scf00597g00053 Petunia axillaris HOM05D000007 ORTHO05D000017 4.4e-06 55.5 99 34.3
Peaxi162Scf00646g00004 Petunia axillaris HOM05D000007 ORTHO05D000017 4.4e-06 55.5 79 35.4
Rhsim05G0180800 Rhododendron simsii HOM05D000007 ORTHO05D000017 4.4e-06 55.5 116 32.8
SalBow8G4267 Salvia bowleyana HOM05D000007 ORTHO05D000017 4.4e-06 55.5 97 38.1
Solyc01g008660.4 Solanum lycopersicum HOM05D000007 ORTHO05D000017 4.4e-06 55.5 81 37.0
PGSC0003DMG400029655 Solanum tuberosum HOM05D000007 ORTHO05D000017 4.4e-06 55.5 102 33.3
CSS0038812 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 5.8e-06 55.1 117 35.9
Ciclev10033474m.g Citrus clementina HOM05D000007 ORTHO05D000017 5.8e-06 55.1 135 30.4
Haze_25722 Corylus avellana HOM05D000007 ORTHO05D000017 5.8e-06 55.1 103 33.0
DCAR_012650 Daucus carota HOM05D000007 ORTHO05D000017 5.8e-06 55.1 141 29.1
Rhsim13G0145100 Rhododendron simsii HOM05D000007 ORTHO05D000017 5.8e-06 55.1 99 39.4
Lalb_Chr18g0057011 Lupinus albus HOM05D000007 ORTHO05D000017 7.5e-06 54.7 123 27.6
Medtr2g021190 Medicago truncatula HOM05D000007 ORTHO05D000017 7.5e-06 54.7 137 29.2
PSO832G0042 Papaver somniferum HOM05D000007 ORTHO05D000017 7.5e-06 54.7 137 32.1
Sopen12g034230 Solanum pennellii HOM05D000007 ORTHO05D000017 7.5e-06 54.7 80 33.8
A03p07240 Brassica napus HOM05D000007 ORTHO05D000017 9.8e-06 54.3 108 30.6
CSS0049080 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 9.8e-06 54.3 108 31.5
CiPaw.09G103100 Carya illinoinensis HOM05D000007 ORTHO05D000017 9.8e-06 54.3 108 36.1
AUR62039091 Chenopodium quinoa HOM05D000007 ORTHO05D000017 9.8e-06 54.3 138 31.9
DCAR_019955 Daucus carota HOM05D000007 ORTHO05D000017 9.8e-06 54.3 132 31.8
Migut.J01312 Erythranthe guttata HOM05D000007 ORTHO05D000017 9.8e-06 54.3 100 33.0
Gorai.004G021500 Gossypium raimondii HOM05D000007 ORTHO05D000017 9.8e-06 54.3 137 29.2
MD16G1218600 Malus domestica HOM05D000007 ORTHO05D000017 9.8e-06 54.3 97 35.1
Medtr2g026010 Medicago truncatula HOM05D000007 ORTHO05D000017 9.8e-06 54.3 151 27.2
Nitab4.5_0000334g0270 Nicotiana tabacum HOM05D000007 ORTHO05D000017 9.8e-06 54.3 132 26.5
PSO339G1645 Papaver somniferum HOM05D000007 ORTHO05D000017 9.8e-06 54.3 106 34.0
RcHm_v2.0_Chr2g0154531 Rosa chinensis HOM05D000007 ORTHO05D000017 9.8e-06 54.3 140 31.4
Solyc12g099550.1 Solanum lycopersicum HOM05D000007 ORTHO05D000017 9.8e-06 54.3 80 33.8
SGA_v2.0_scaffold90G27929 Striga asiatica HOM05D012724 ORTHO05D010595 9.8e-06 54.3 133 28.6


User provided reference genes

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