Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 9.9e-118 426.8 214 100.0
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 3.9e-90 335.1 219 79.5
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 5.1e-90 334.7 214 82.7
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 1.4e-82 310.1 215 76.3
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.3e-71 271.6 217 71.0
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 5.3e-71 271.6 217 71.0
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.8e-69 265.4 217 69.1
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.7e-67 259.2 221 66.1
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.7e-67 258.5 220 67.7
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.4e-66 256.9 181 74.0
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.8e-66 256.5 220 67.3
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.3e-66 256.1 221 64.7
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.0e-66 255.8 220 67.3
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 8.8e-66 254.2 221 65.6
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.6e-65 252.7 222 64.4
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.2e-61 239.6 212 62.7
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 3.8e-61 238.8 216 63.4
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 6.5e-61 238.0 222 61.7
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 6.5e-61 238.0 213 63.8
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 8.5e-61 237.7 216 62.5
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 2.1e-59 233.0 237 59.1
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.7e-59 232.6 218 61.0
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 2.7e-59 232.6 211 62.6
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 6.1e-59 231.5 211 64.5
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 6.1e-59 231.5 220 61.4
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 6.1e-59 231.5 218 59.6
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.0e-58 229.2 211 63.5
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 3.0e-58 229.2 219 62.1
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 4.0e-58 228.8 211 63.0
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 8.8e-58 227.6 209 62.2
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 8.8e-58 227.6 210 60.0
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.2e-57 227.3 211 64.0
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 2.6e-57 226.1 189 64.6
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 4.4e-57 225.3 211 62.6
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 4.4e-57 225.3 233 55.4
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 9.8e-57 224.2 209 59.8
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 1.7e-56 223.4 219 58.9
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 3.7e-56 222.2 209 60.8
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 4.8e-56 221.9 232 56.9
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 4.8e-56 221.9 227 58.6
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.1e-55 220.7 214 56.5
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 4.1e-55 218.8 219 60.3
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 9.1e-55 217.6 215 60.0
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.6e-54 216.9 219 58.4
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.0e-54 216.5 214 58.4
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.5e-54 215.3 207 59.9
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 7.7e-54 214.5 214 59.8
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 8.5e-53 211.1 216 55.6
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 2.1e-51 206.5 212 54.7
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 8.8e-50 201.1 216 53.7
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 5.7e-49 198.4 234 51.3
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 4.9e-48 195.3 218 54.6
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 1.1e-47 194.1 216 54.6
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 1.4e-47 193.7 218 55.5
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 3.1e-47 192.6 223 52.9
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 3.1e-47 192.6 223 52.9
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 5.4e-47 191.8 216 54.2
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.6e-46 190.3 212 54.2
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 2.7e-46 189.5 251 47.8
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 7.7e-46 188.0 212 51.9
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 1.0e-45 187.6 227 48.5
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 1.0e-45 187.6 216 52.8
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 1.0e-45 187.6 224 50.9
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.3e-45 186.4 218 55.5
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 3.8e-45 185.7 212 51.9
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 6.6e-45 184.9 224 54.0
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 8.6e-45 184.5 236 49.2
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.5e-44 183.7 218 51.4
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.9e-44 183.3 212 53.3
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 2.5e-44 183.0 213 54.0
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.3e-44 182.6 220 51.8
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 7.3e-44 181.4 237 48.5
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 7.3e-44 181.4 213 50.2
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.8e-43 179.5 212 50.5
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 3.6e-43 179.1 212 49.5
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 3.6e-43 179.1 212 49.5
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 3.6e-43 179.1 212 49.5
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 4.7e-43 178.7 213 50.7
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 6.1e-43 178.3 213 52.6
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.1e-43 178.3 182 56.0
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 1.8e-42 176.8 212 49.1
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 1.8e-42 176.8 212 49.1
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 4.0e-42 175.6 215 49.8
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 5.2e-42 175.3 215 49.3
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 5.2e-42 175.3 213 49.8
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 6.8e-42 174.9 192 53.6
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 6.8e-42 174.9 213 49.3
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 6.8e-42 174.9 155 63.9
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 8.9e-42 174.5 182 55.5
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.0e-41 173.3 213 52.6
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 2.6e-41 172.9 215 47.0
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 3.4e-41 172.6 212 49.1
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 3.4e-41 172.6 212 49.1
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 3.4e-41 172.6 212 49.1
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 4.4e-41 172.2 228 48.7
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 9.8e-41 171.0 212 48.6
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 9.8e-41 171.0 199 56.8
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 2.9e-40 169.5 205 48.8
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 8.3e-40 167.9 212 48.1
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 8.3e-40 167.9 224 50.9
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 2.4e-39 166.4 209 48.3
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 7.0e-39 164.9 215 47.9
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 7.0e-39 164.9 216 47.7
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 7.0e-39 164.9 216 47.7
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 7.0e-39 164.9 216 47.7
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 9.2e-39 164.5 216 47.2
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 9.2e-39 164.5 216 47.2
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.2e-38 164.1 214 48.1
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 1.6e-38 163.7 211 47.4
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 3.5e-38 162.5 225 44.0
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 3.5e-38 162.5 227 41.9
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 7.8e-38 161.4 190 52.6
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 5.0e-37 158.7 227 48.5
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 1.1e-36 157.5 217 47.9
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 1.5e-36 157.1 213 47.4
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.5e-36 156.4 205 48.8
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 7.3e-36 154.8 220 48.2
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.1e-35 153.3 226 48.2
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 3.6e-35 152.5 210 47.1
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.7e-35 152.1 195 48.2
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 6.2e-35 151.8 215 47.9
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 1.8e-34 150.2 204 50.0
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 4.0e-34 149.1 200 45.0
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 4.0e-34 149.1 229 45.9
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 1.9e-31 140.2 204 44.1
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.9e-31 140.2 210 41.4
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 2.4e-31 139.8 186 44.6
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 4.1e-31 139.0 131 63.4
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 5.4e-31 138.7 216 40.7
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 9.2e-31 137.9 187 43.9
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 1.6e-30 137.1 207 44.0
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 2.7e-30 136.3 213 41.3
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 2.7e-30 136.3 193 44.6
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 4.6e-30 135.6 198 44.4
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 6.0e-30 135.2 252 38.1
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 7.8e-30 134.8 190 45.8
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.7e-29 133.7 195 43.1
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.0e-29 132.1 131 58.8
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 8.6e-29 131.3 262 38.2
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 7.3e-28 128.3 211 38.9
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 8.1e-27 124.8 215 39.5
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.5e-25 120.6 190 41.1
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 2.6e-25 119.8 101 63.4
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 4.4e-25 119.0 214 37.4
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 5.8e-25 118.6 206 38.3
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 7.5e-25 118.2 130 56.9
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 1.3e-24 117.5 206 40.3
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 4.9e-24 115.5 104 58.7
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 5.4e-23 112.1 213 39.0
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 5.4e-23 112.1 159 48.4
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.2e-22 110.9 175 40.6
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 1.2e-22 110.9 225 36.9
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 3.0e-21 106.3 207 36.2
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 5.1e-21 105.5 202 36.6
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.1e-20 104.4 170 40.6
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 3.3e-20 102.8 171 42.1
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 2.3e-18 96.7 105 55.2
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 2.6e-17 93.2 186 39.2
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 2.6e-17 93.2 186 39.2
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 2.6e-17 93.2 87 58.6
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 3.4e-17 92.8 186 38.7
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 7.6e-17 91.7 186 38.7
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 7.6e-17 91.7 186 38.7
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.9e-16 89.7 208 34.6
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 7.1e-15 85.1 257 31.9
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.1e-12 77.8 81 49.4
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.6e-12 75.5 158 33.5
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 7.3e-12 75.1 207 29.0
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 3.6e-11 72.8 99 42.4
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 8.1e-11 71.6 193 32.1
Ah.05g171110 Amaranthus hybridus HOM05D004006 ORTHO05D004585 3.1e-10 69.7 95 46.3
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 8.9e-10 68.2 191 34.0


User provided reference genes

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