Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_35712 Corchorus olitorius HOM05D004025 ORTHO05D004929 0.0e+00 1580.1 929 100.0
Thecc.01G130400 Theobroma cacao HOM05D004025 ORTHO05D004929 0.0e+00 1258.0 864 88.3
Gorai.008G094100 Gossypium raimondii HOM05D004025 ORTHO05D004929 0.0e+00 1203.7 857 83.2
Gohir.A12G090600 Gossypium hirsutum HOM05D004025 ORTHO05D004929 0.0e+00 1196.8 857 83.0
Gohir.D12G084000 Gossypium hirsutum HOM05D004025 ORTHO05D004929 0.0e+00 1113.2 856 78.7
RcHm_v2.0_Chr2g0120731 Rosa chinensis HOM05D004025 ORTHO05D004929 1.6e-305 1052.7 874 72.8
CANSAT01G1331 Cannabis sativa HOM05D004025 ORTHO05D004929 2.6e-303 1045.4 878 72.8
Cpa.g.sc42.143 Carica papaya HOM05D004025 ORTHO05D004929 3.7e-302 1041.6 880 73.4
MD17G1256600 Malus domestica HOM05D004025 ORTHO05D004929 4.5e-300 1034.6 873 73.3
TWI75G0726 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 5.9e-300 1034.2 865 73.1
TWI31G0593 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 7.7e-300 1033.9 866 72.1
FvH4_1g24240 Fragaria vesca HOM05D004025 ORTHO05D004929 8.5e-299 1030.4 879 73.2
FAN19G0688 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.9e-298 1029.2 879 72.9
Manes.12G154400 Manihot esculenta HOM05D004025 ORTHO05D004929 2.7e-297 1025.4 882 72.4
FAN28G0438 Fragaria x ananassa HOM05D004025 ORTHO05D004929 2.3e-296 1022.3 879 71.2
FAN26G1692 Fragaria x ananassa HOM05D004025 ORTHO05D004929 8.8e-296 1020.4 879 72.6
CsaV3_6G041660 Cucumis sativus L. HOM05D004025 ORTHO05D004929 1.1e-295 1020.0 876 71.3
MELO3C008054.2 Cucumis melo HOM05D004025 ORTHO05D004929 3.3e-295 1018.5 876 71.5
ClCG01G015430 Citrullus lanatus HOM05D004025 ORTHO05D004929 4.8e-294 1014.6 876 71.1
PGR079G0002 Punica granatum HOM05D004025 ORTHO05D004929 3.1e-293 1011.9 859 73.5
PGR119G0653 Punica granatum HOM05D004025 ORTHO05D004929 3.1e-293 1011.9 859 73.5
Potri.007G109000 Populus trichocarpa HOM05D004025 ORTHO05D004929 3.5e-292 1008.4 913 66.2
FAN23G0558 Fragaria x ananassa HOM05D004025 ORTHO05D004929 7.7e-292 1007.3 879 71.9
FAN23G0951 Fragaria x ananassa HOM05D004025 ORTHO05D004929 2.5e-290 1002.3 879 71.6
CiPaw.03G122700 Carya illinoinensis HOM05D004025 ORTHO05D004929 1.2e-289 1000.0 882 70.3
Sed0015970 Sechium edule HOM05D004025 ORTHO05D004929 1.2e-289 1000.0 875 70.7
Lj1g0010712 Lotus japonicus HOM05D004025 ORTHO05D004929 9.8e-287 990.3 891 68.0
Glyma.05G191200 Glycine max HOM05D004025 ORTHO05D004929 2.2e-286 989.2 895 68.4
Phvul.009G149800 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 3.5e-284 981.9 894 67.4
Sabra07G0089100 Salix brachista HOM05D004025 ORTHO05D004929 5.9e-284 981.1 968 64.0
TAR625G0443 Trochodendron aralioides HOM05D004025 ORTHO05D004929 7.7e-284 980.7 867 68.2
Glyma.06G152800 Glycine max HOM05D004025 ORTHO05D004929 2.2e-283 979.2 892 68.0
arahy.Tifrunner.gnm1.ann1.P4XMCK Arachis hypogaea HOM05D004025 ORTHO05D004929 2.9e-283 978.8 895 68.6
Glyma.08G156400 Glycine max HOM05D004025 ORTHO05D004929 2.5e-282 975.7 895 67.7
Glyma.04G213400 Glycine max HOM05D004025 ORTHO05D004929 1.2e-281 973.4 893 67.6
CiPaw.04G083500 Carya illinoinensis HOM05D004025 ORTHO05D004929 1.6e-281 973.0 880 67.3
Hma1.2p1_0476F.1_g160915 Hydrangea macrophylla HOM05D004025 ORTHO05D004929 2.7e-281 972.2 874 69.5
Phvul.002G271500 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 4.7e-281 971.5 875 70.2
Potri.005G059000 Populus trichocarpa HOM05D004025 ORTHO05D004929 4.7e-281 971.5 897 66.3
Ciclev10000085m.g Citrus clementina HOM05D004025 ORTHO05D004929 4.0e-280 968.4 874 73.5
Dinv24344 Davidia involucrata HOM05D004025 ORTHO05D004929 2.0e-279 966.1 902 67.2
Aqoxy6G00339 Aquilegia oxysepala HOM05D004025 ORTHO05D004929 3.4e-279 965.3 868 66.5
Lalb_Chr08g0238391 Lupinus albus HOM05D004025 ORTHO05D004929 3.4e-279 965.3 881 69.8
Manes.13G083201 Manihot esculenta HOM05D004025 ORTHO05D004929 4.4e-279 964.9 884 67.8
Medtr8g093570 Medicago truncatula HOM05D004025 ORTHO05D004929 2.8e-278 962.2 897 67.0
Cfa002885 Carpinus fangiana HOM05D004025 ORTHO05D004929 1.1e-277 960.3 881 72.2
Haze_25220 Corylus avellana HOM05D004025 ORTHO05D004929 1.4e-277 959.9 881 72.0
Nn1g06239 Nelumbo nucifera HOM05D004025 ORTHO05D004929 1.8e-277 959.5 857 64.1
MD09G1261800 Malus domestica HOM05D004025 ORTHO05D004929 2.0e-276 956.1 878 69.0
Lalb_Chr12g0203161 Lupinus albus HOM05D004025 ORTHO05D004929 1.0e-275 953.7 897 66.7
Nn5g28584 Nelumbo nucifera HOM05D004025 ORTHO05D004929 3.8e-275 951.8 868 63.0
Rhsim10G0135700 Rhododendron simsii HOM05D004025 ORTHO05D004929 3.3e-274 948.7 965 61.1
THA.LOC104800034 Tarenaya hassleriana HOM05D004025 ORTHO05D004929 7.2e-274 947.6 920 64.1
Sc09g0002360 Simmondsia chinensis HOM05D004025 ORTHO05D004929 1.4e-272 943.3 893 65.7
Peaxi162Scf00589g00320 Petunia axillaris HOM05D004025 ORTHO05D004929 2.3e-272 942.6 892 67.4
TPR.G37364 Trifolium pratense HOM05D004025 ORTHO05D004929 2.0e-271 939.5 862 65.4
Psat7g045720 Pisum sativum HOM05D004025 ORTHO05D004929 1.8e-269 932.9 899 65.3
Solyc11g005910.2 Solanum lycopersicum HOM05D004025 ORTHO05D004929 5.4e-269 931.4 929 62.8
Sopen11g001850 Solanum pennellii HOM05D004025 ORTHO05D004929 7.0e-269 931.0 929 63.6
CAN.G652.7 Capsicum annuum HOM05D004025 ORTHO05D004929 7.8e-268 927.5 929 62.9
Carub.0008s2485 Capsella rubella HOM05D004025 ORTHO05D004929 2.3e-267 926.0 920 63.6
AT5G64070 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 3.0e-267 925.6 919 62.9
GSVIVG01026496001 Vitis vinifera HOM05D004025 ORTHO05D004929 8.6e-267 924.1 1022 53.2
Aa31LG1G17850 Aethionema arabicum HOM05D004025 ORTHO05D004929 1.1e-266 923.7 919 63.2
Ca_16939_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 4.3e-266 921.8 863 62.2
TPR.G34649 Trifolium pratense HOM05D004025 ORTHO05D004929 9.5e-266 920.6 907 61.9
Ca_16958_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 2.8e-265 919.1 857 62.2
Hund21821 Selenicereus undatus HOM05D004025 ORTHO05D004929 1.7e-262 909.8 898 63.4
arahy.Tifrunner.gnm1.ann1.GI519K Arachis hypogaea HOM05D004025 ORTHO05D004929 2.9e-262 909.1 900 63.3
Actinidia06630 Actinidia chinensis HOM05D004025 ORTHO05D004929 6.4e-262 907.9 911 65.3
arahy.Tifrunner.gnm1.ann1.T69UQ6 Arachis hypogaea HOM05D004025 ORTHO05D004929 8.3e-262 907.5 900 63.2
PSO675G2111 Papaver somniferum HOM05D004025 ORTHO05D004929 4.1e-261 905.2 884 64.1
SGA_v2.0_scaffold132G34527 Striga asiatica HOM05D004025 ORTHO05D004929 1.6e-260 903.3 945 63.1
PSO541G3336 Papaver somniferum HOM05D004025 ORTHO05D004929 2.0e-260 902.9 884 64.7
AUR62006840 Chenopodium quinoa HOM05D004025 ORTHO05D004929 3.0e-259 899.0 896 64.7
VMungo0251G2658 Vigna mungo HOM05D004025 ORTHO05D004929 6.6e-259 897.9 1008 59.8
AL8G41330 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 1.5e-258 896.7 920 61.8
Carub.0006s0789 Capsella rubella HOM05D004025 ORTHO05D004929 3.3e-258 895.6 919 60.2
CARHR277980 Cardamine hirsuta HOM05D004025 ORTHO05D004929 4.4e-255 885.2 919 61.3
Eucgr.I00214 Eucalyptus grandis HOM05D004025 ORTHO05D004929 4.4e-255 885.2 860 64.5
Ah.06g190860 Amaranthus hybridus HOM05D004025 ORTHO05D004929 1.3e-254 883.6 896 63.7
Sp2g27140 Schrenkiella parvula HOM05D004025 ORTHO05D004929 3.7e-254 882.1 919 61.3
AL6G19740 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 1.9e-253 879.8 881 65.0
Migut.L00888 Erythranthe guttata HOM05D004025 ORTHO05D004929 1.9e-253 879.8 921 62.4
AT5G09350 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 3.2e-253 879.0 881 64.5
Eucgr.L02369 Eucalyptus grandis HOM05D004025 ORTHO05D004929 3.5e-252 875.5 860 61.2
Oeu047692.2 Olea europaea HOM05D004025 ORTHO05D004929 2.3e-251 872.8 921 64.9
A06p30780 Brassica napus HOM05D004025 ORTHO05D004929 1.1e-250 870.5 895 63.6
CSS0008777 Camellia sinensis var. sinensis HOM05D004025 ORTHO05D004929 1.5e-250 870.2 868 64.9
Thhalv10003553m.g Eutrema salsugineum HOM05D004025 ORTHO05D004929 1.9e-250 869.8 919 60.3
BraA06t26020Z Brassica rapa HOM05D004025 ORTHO05D004929 9.5e-250 867.5 895 63.5
Psat0s2140g0080 Pisum sativum HOM05D004025 ORTHO05D004929 1.6e-249 866.7 864 65.4
BolC3t18483H Brassica oleracea HOM05D004025 ORTHO05D004929 3.6e-249 865.5 883 64.1
BcaC01g02663 Brassica carinata HOM05D004025 ORTHO05D004929 6.2e-249 864.8 883 64.1
C03p62200 Brassica napus HOM05D004025 ORTHO05D004929 6.2e-249 864.8 883 64.1
BraA02t09234Z Brassica rapa HOM05D004025 ORTHO05D004929 6.2e-249 864.8 888 62.6
DCAR_014341 Daucus carota HOM05D004025 ORTHO05D004929 8.1e-249 864.4 869 64.6
SalBow1G5432 Salvia bowleyana HOM05D004025 ORTHO05D004929 1.4e-248 863.6 944 60.2
MBI06_g29665_MAGBIO Magnolia biondii HOM05D004025 ORTHO05D004929 2.0e-247 859.8 873 64.8
BcaB02g09789 Brassica carinata HOM05D004025 ORTHO05D004929 9.9e-247 857.4 921 60.9
Lj4g0019129 Lotus japonicus HOM05D004025 ORTHO05D004929 1.7e-246 856.7 903 64.9
BcaC03g18241 Brassica carinata HOM05D004025 ORTHO05D004929 2.9e-246 855.9 884 63.1
MSTRG.2662 Avicennia marina HOM05D004025 ORTHO05D004929 1.1e-245 854.0 957 61.5
C02p63120 Brassica napus HOM05D004025 ORTHO05D004929 1.9e-245 853.2 884 62.0
BolC2t12384H Brassica oleracea HOM05D004025 ORTHO05D004929 2.4e-245 852.8 884 61.8
A02p43140 Brassica napus HOM05D004025 ORTHO05D004929 3.2e-245 852.4 888 62.0
Cc07_g18300 Coffea canephora HOM05D004025 ORTHO05D004929 4.1e-245 852.0 1050 54.5
BcaB07g29718 Brassica carinata HOM05D004025 ORTHO05D004929 1.1e-242 844.0 883 62.9
AUR62000495 Chenopodium quinoa HOM05D004025 ORTHO05D004929 1.8e-240 836.6 892 61.1
Lj4C845G3 Lonicera japonica HOM05D004025 ORTHO05D004929 8.9e-240 834.3 801 66.9
ATR0721G093 Amborella trichopoda HOM05D004025 ORTHO05D004929 1.5e-239 833.6 880 57.6
EL10Ac4g09596 Beta vulgaris HOM05D004025 ORTHO05D004929 1.5e-239 833.6 994 55.8
Aa31LG3G17690 Aethionema arabicum HOM05D004025 ORTHO05D004929 1.3e-238 830.5 901 60.4
SHI11475 Sapria himalayana HOM05D004025 ORTHO05D004929 1.7e-238 830.1 883 62.4
Lsat_1_v5_gn_8_116820 Lactuca sativa HOM05D004025 ORTHO05D004929 1.1e-234 817.4 897 56.4
CDE06G1971 Ceratophyllum demersum HOM05D004025 ORTHO05D004929 9.9e-231 804.3 970 56.5
TAR381G0182 Trochodendron aralioides HOM05D004025 ORTHO05D004929 4.2e-229 798.9 700 69.0
Prupe.3G159200 Prunus persica HOM05D004025 ORTHO05D004929 9.3e-229 797.7 774 67.6
HanXRQChr09g0258681 Helianthus annuus HOM05D004025 ORTHO05D004929 6.0e-228 795.0 870 61.7
Ca_17642_v3 Cicer arietinum L. HOM05D002604 ORTHO05D004929 1.3e-214 750.7 786 58.7
Actinidia20083 Actinidia chinensis HOM05D004025 ORTHO05D004929 3.5e-212 742.7 836 61.7
Zm00001eb168670 Zea mays HOM05D004025 ORTHO05D004929 1.2e-207 727.6 956 54.7
HPP92_019399 Vanilla planifolia HOM05D004025 ORTHO05D004929 2.2e-201 706.8 1103 48.0
SEGI_16906 Sequoiadendron giganteum HOM05D004025 ORTHO05D004929 4.8e-201 705.7 888 53.3
ECA232G2812 Erigeron canadensis HOM05D004025 ORTHO05D004929 6.9e-200 701.8 820 57.3
Lsat_1_v5_gn_5_42641 Lactuca sativa HOM05D004025 ORTHO05D004929 3.9e-195 686.0 858 50.8
unitig_52.g17244 Utricularia gibba HOM05D004025 ORTHO05D004929 6.3e-177 625.5 1042 46.5
CARHR204050 Cardamine hirsuta HOM05D004025 ORTHO05D004929 1.8e-176 624.0 651 64.7
VMungo1309G0837 Vigna mungo HOM05D004025 ORTHO05D004929 9.5e-165 585.1 599 65.8
QL06p028827 Quercus lobata HOM05D004025 ORTHO05D004929 6.8e-155 552.4 369 77.0
SMO182G0011 Selaginella moellendorffii HOM05D004025 ORTHO05D004929 2.0e-154 550.8 872 41.6
SMO134G0131 Selaginella moellendorffii HOM05D004025 ORTHO05D004929 1.6e-151 541.2 878 41.6
Mapoly0091s0020 Marchantia polymorpha HOM05D004025 ORTHO05D004929 1.3e-145 521.5 990 39.3
Pp3c5_11330 Physcomitrium patens HOM05D004025 ORTHO05D004929 4.9e-145 519.6 965 41.1
Nitab4.5_0005674g0020 Nicotiana tabacum HOM05D004025 ORTHO05D004929 2.4e-136 490.7 362 71.8
Pp3c6_11330 Physcomitrium patens HOM05D004025 ORTHO05D004929 4.1e-136 490.0 943 39.9
BcaC01g02666 Brassica carinata HOM05D004025 ORTHO05D004929 1.5e-133 481.5 407 65.8
Nitab4.5_0005674g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 2.1e-132 477.6 564 58.9
AagrBONN_evm.TU.Sc2ySwM_228.921 Anthoceros agrestis HOM05D004025 ORTHO05D004929 1.6e-127 461.5 1000 40.0
PGSC0003DMG401028661 Solanum tuberosum HOM05D004025 ORTHO05D004929 4.6e-127 459.9 564 56.9
Nitab4.5_0002667g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 1.5e-125 454.9 564 57.4
vmacro12812 Vaccinium macrocarpon HOM05D004025 ORTHO05D004929 8.9e-123 445.7 555 58.6
QL06p028841 Quercus lobata HOM05D004025 ORTHO05D004929 7.3e-117 426.0 381 71.7
Os11g0209700 Oryza sativa ssp. japonica HOM05D004025 ORTHO05D004929 1.5e-109 401.7 364 58.2
arahy.Tifrunner.gnm1.ann1.H0R63D Arachis hypogaea HOM05D004025 ORTHO05D004929 1.7e-105 388.3 280 72.9
Nitab4.5_0002667g0030 Nicotiana tabacum HOM05D004025 ORTHO05D004929 3.3e-101 374.0 284 69.4
vmacro12810 Vaccinium macrocarpon HOM05D004025 ORTHO05D004929 4.8e-100 370.2 293 67.9
VMungo1309G1675 Vigna mungo HOM05D004025 ORTHO05D004929 1.1e-99 369.0 276 71.0
Ca_05857_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 1.3e-89 335.5 271 65.3
Medtr3g096110 Medicago truncatula HOM05D004025 ORTHO05D004929 1.0e-81 309.3 209 73.7
CDE08G1435 Ceratophyllum demersum HOM05D004025 ORTHO05D004929 6.9e-75 286.6 228 68.4
CBR_g34503 Chara braunii HOM05D004025 ORTHO05D004929 1.0e-57 229.6 405 39.8
Zm00001eb087390 Zea mays HOM05D004025 ORTHO05D004929 3.7e-44 184.5 180 54.4
TAR381G0306 Trochodendron aralioides HOM05D004025 ORTHO05D004929 5.8e-37 160.6 96 85.4
Zm00001eb027210 Zea mays HOM05D004025 ORTHO05D021029 3.9e-33 147.9 133 57.9
Zm00001eb326430 Zea mays HOM05D004025 ORTHO05D021029 3.9e-33 147.9 135 57.8
Zm00001eb361560 Zea mays HOM05D004025 ORTHO05D021029 3.9e-33 147.9 135 57.8
Zm00001eb377950 Zea mays HOM05D004025 ORTHO05D021029 5.6e-32 144.1 133 57.1
arahy.Tifrunner.gnm1.ann1.EA5EP6 Arachis hypogaea HOM05D004025 ORTHO05D004929 1.6e-31 142.5 80 81.2
Zm00001eb114410 Zea mays HOM05D004025 ORTHO05D021029 1.8e-30 139.0 132 54.5
vmacro12811 Vaccinium macrocarpon HOM05D004025 ORTHO05D021029 6.0e-26 124.0 101 66.3
Lj4A845G44 Lonicera japonica HOM05D004025 ORTHO05D004929 1.1e-24 119.8 69 85.5
arahy.Tifrunner.gnm1.ann1.AFH0P4 Arachis hypogaea HOM05D004025 ORTHO05D004929 2.2e-20 105.5 60 78.3
arahy.Tifrunner.gnm1.ann1.YT22YU Arachis hypogaea HOM05D004025 ORTHO05D004929 3.7e-20 104.8 59 79.7
CDE08G0496 Ceratophyllum demersum HOM05D021779 ORTHO05D004929 8.3e-20 103.6 69 71.0
Cre06.g304650 Chlamydomonas reinhardtii HOM05D004025 ORTHO05D004929 4.6e-18 97.8 173 31.8
VMungo1127G1876 Vigna mungo HOM05D001773 ORTHO05D001710 2.5e-16 92.0 73 65.8
TPR.G7026 Trifolium pratense HOM05D004025 ORTHO05D004929 1.2e-13 83.2 58 72.4
arahy.Tifrunner.gnm1.ann1.WA1G5B Arachis hypogaea HOM05D001872 ORTHO05D001859 7.6e-13 80.5 45 82.2
arahy.Tifrunner.gnm1.ann1.9PS12T Arachis hypogaea HOM05D004025 ORTHO05D004929 1.4e-11 76.3 48 70.8
Zm00001eb352480 Zea mays HOM05D004025 ORTHO05D021029 5.4e-11 74.3 71 54.9
arahy.Tifrunner.gnm1.ann1.2KJI71 Arachis hypogaea HOM05D003753 ORTHO05D011061 8.7e-09 67.0 34 85.3


User provided reference genes

Program Settings