Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 3.8e-45 184.5 96 100.0
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 2.9e-32 141.7 124 63.7
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 7.0e-31 137.1 96 75.0
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 6.0e-30 134.0 102 71.6
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 2.3e-21 105.5 94 63.8
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 3.3e-20 101.7 96 61.5
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 5.6e-20 100.9 96 61.5
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 7.3e-20 100.5 96 58.3
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 7.3e-20 100.5 96 58.3
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 3.1e-18 95.1 96 57.3
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 4.0e-18 94.7 96 56.2
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 4.0e-18 94.7 97 58.8
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 5.2e-18 94.4 96 58.3
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 8.9e-18 93.6 96 55.2
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 8.9e-18 93.6 96 55.2
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 1.2e-17 93.2 96 56.2
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 1.2e-17 93.2 96 56.2
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.2e-17 93.2 95 55.8
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 1.5e-17 92.8 94 54.3
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 2.0e-17 92.4 96 55.2
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 2.0e-17 92.4 91 56.0
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 2.6e-17 92.0 96 54.2
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 2.6e-17 92.0 96 55.2
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.4e-17 91.7 96 55.2
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 4.4e-17 91.3 95 54.7
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 5.8e-17 90.9 96 55.2
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 7.6e-17 90.5 96 53.1
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 9.9e-17 90.1 96 54.2
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 9.9e-17 90.1 96 54.2
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 9.9e-17 90.1 96 54.2
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 9.9e-17 90.1 95 52.6
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 1.3e-16 89.7 94 52.1
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.3e-16 89.7 96 54.2
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 1.3e-16 89.7 96 53.1
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 1.7e-16 89.4 96 53.1
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 1.7e-16 89.4 96 54.2
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.2e-16 89.0 96 54.2
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 2.2e-16 89.0 96 55.2
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 2.2e-16 89.0 96 55.2
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 2.9e-16 88.6 96 52.1
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.9e-16 88.6 96 54.2
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.9e-16 88.6 96 54.2
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.9e-16 88.6 96 54.2
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.9e-16 88.6 96 53.1
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 2.9e-16 88.6 96 55.2
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 3.7e-16 88.2 96 53.1
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 3.7e-16 88.2 96 55.2
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 3.7e-16 88.2 96 54.2
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 3.7e-16 88.2 96 53.1
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 4.9e-16 87.8 96 53.1
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 4.9e-16 87.8 96 53.1
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 6.4e-16 87.4 96 53.1
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 6.4e-16 87.4 96 53.1
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 6.4e-16 87.4 96 53.1
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 8.3e-16 87.0 96 53.1
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 8.3e-16 87.0 96 53.1
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 8.3e-16 87.0 96 52.1
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 1.1e-15 86.7 96 51.0
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 1.1e-15 86.7 96 51.0
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-15 86.3 96 52.1
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 1.4e-15 86.3 96 52.1
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 1.4e-15 86.3 96 52.1
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 1.9e-15 85.9 96 52.1
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.9e-15 85.9 93 53.8
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.9e-15 85.9 93 53.8
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 1.9e-15 85.9 96 50.0
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 1.9e-15 85.9 96 53.1
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 1.9e-15 85.9 96 51.0
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 1.9e-15 85.9 96 51.0
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 2.4e-15 85.5 96 54.2
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 2.4e-15 85.5 96 52.1
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 3.2e-15 85.1 96 52.1
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 3.2e-15 85.1 96 52.1
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.2e-15 85.1 96 52.1
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 3.2e-15 85.1 96 53.1
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 4.1e-15 84.7 96 52.1
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 5.4e-15 84.3 96 51.0
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 7.1e-15 84.0 96 51.0
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 1.2e-14 83.2 96 51.0
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 1.6e-14 82.8 96 50.0
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 2.1e-14 82.4 93 51.6
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 2.1e-14 82.4 51 84.3
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 2.1e-14 82.4 51 84.3
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 2.1e-14 82.4 96 46.9
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 2.1e-14 82.4 95 49.5
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 2.1e-14 82.4 96 49.0
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.7e-14 82.0 131 38.2
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.7e-14 82.0 131 38.2
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 2.7e-14 82.0 48 79.2
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 3.5e-14 81.6 96 50.0
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 6.0e-14 80.9 96 50.0
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 6.0e-14 80.9 96 50.0
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 6.0e-14 80.9 94 51.1
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 1.0e-13 80.1 96 49.0
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 1.7e-13 79.3 96 45.8
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 2.3e-13 79.0 96 47.9
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 2.3e-13 79.0 128 36.7
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 3.0e-13 78.6 96 49.0
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 5.1e-13 77.8 96 47.9
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 5.1e-13 77.8 96 52.1
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 5.1e-13 77.8 94 48.9
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 5.1e-13 77.8 48 77.1
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 1.5e-12 76.3 44 79.5
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 1.9e-12 75.9 49 71.4
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 3.3e-12 75.1 93 47.3
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 4.3e-12 74.7 96 49.0
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 7.3e-12 73.9 58 63.8
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 7.3e-12 73.9 58 63.8
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 5.8e-09 64.3 81 46.9
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 9.9e-09 63.5 42 69.0
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 2.9e-08 62.0 71 43.7
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 2.9e-08 62.0 94 38.3
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 3.8e-08 61.6 55 52.7
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 1.9e-07 59.3 31 100.0
Cre14.g625550 Chlamydomonas reinhardtii HOM05D038377 ORTHO05D034447 9.3e-07 57.0 89 33.7
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 1.6e-06 56.2 56 58.9
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.6e-06 56.2 69 47.8
CAN.G400.4 Capsicum annuum HOM05D004175 ORTHO05D115597 2.7e-06 55.5 35 74.3
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 3.5e-06 55.1 71 47.9


User provided reference genes

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