Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 2.4e-284 981.5 499 100.0
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 4.8e-272 940.6 499 94.6
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 5.3e-263 910.6 499 91.6
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 2.1e-259 898.7 499 90.4
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.7e-259 898.3 499 90.4
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.4e-247 858.6 499 87.2
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 6.1e-219 764.2 499 81.0
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 5.5e-212 741.1 530 75.7
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 9.4e-212 740.3 499 76.0
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 9.4e-212 740.3 497 75.7
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 2.8e-208 728.8 499 72.9
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 3.8e-205 718.4 499 72.7
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 7.2e-204 714.1 500 73.0
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 4.0e-202 708.4 499 71.3
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 5.2e-202 708.0 539 70.1
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 1.2e-201 706.8 499 69.3
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.5e-201 706.4 499 71.1
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 1.7e-200 703.0 498 71.9
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 4.1e-199 698.4 499 71.1
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 7.0e-199 697.6 501 71.1
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 3.5e-198 695.3 499 71.5
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.9e-196 689.5 506 70.6
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 1.9e-196 689.5 503 70.4
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 3.3e-196 688.7 504 69.4
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.6e-196 688.0 506 70.6
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 3.6e-195 685.3 499 69.1
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 6.1e-195 684.5 499 70.9
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.8e-194 682.9 503 71.0
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 2.0e-193 679.5 500 69.2
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.4e-193 678.3 506 70.0
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 2.2e-192 676.0 499 67.9
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 4.9e-192 674.9 499 68.5
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 2.4e-191 672.5 499 67.7
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 2.4e-191 672.5 499 67.7
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 4.1e-191 671.8 499 68.1
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 4.1e-191 671.8 499 67.7
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 7.0e-191 671.0 506 67.2
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 7.0e-191 671.0 499 67.5
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 9.2e-191 670.6 499 67.9
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 9.2e-191 670.6 504 66.9
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.2e-190 670.2 499 68.1
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 2.0e-190 669.5 499 66.9
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 5.0e-189 664.8 499 66.9
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 1.9e-188 662.9 499 67.3
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 2.5e-188 662.5 499 67.5
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 4.3e-188 661.8 499 67.7
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 1.6e-187 659.8 501 68.7
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 2.1e-187 659.4 499 66.9
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 2.1e-187 659.4 499 67.7
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 3.6e-187 658.7 499 68.3
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 6.2e-187 657.9 499 66.5
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 8.0e-187 657.5 499 67.5
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 2.3e-186 656.0 524 63.9
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 4.0e-186 655.2 499 68.1
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 2.6e-185 652.5 535 63.6
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 3.4e-185 652.1 499 65.9
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 9.8e-185 650.6 453 73.5
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 2.9e-184 649.0 498 67.3
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 4.9e-184 648.3 500 66.6
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 6.4e-184 647.9 499 65.5
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 8.3e-184 647.5 499 67.1
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 2.4e-183 646.0 499 66.1
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 2.4e-183 646.0 498 66.9
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 3.2e-183 645.6 513 64.9
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 2.3e-181 639.4 498 66.9
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 3.0e-181 639.0 436 70.9
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 8.6e-181 637.5 498 66.7
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 1.1e-180 637.1 499 64.5
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 3.3e-180 635.6 501 67.1
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 7.3e-180 634.4 518 65.1
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 2.8e-179 632.5 499 65.1
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 3.6e-179 632.1 504 65.5
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 6.8e-178 627.9 500 65.0
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 6.8e-178 627.9 500 65.0
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 2.6e-177 625.9 500 64.8
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.6e-177 625.9 349 90.3
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 4.4e-177 625.2 501 63.9
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 1.1e-175 620.5 504 63.9
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 3.2e-175 619.0 500 64.0
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 4.1e-175 618.6 504 64.1
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 1.2e-174 617.1 464 67.7
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 2.5e-172 609.4 498 61.8
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 2.1e-171 606.3 507 62.3
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 6.2e-171 604.7 518 62.5
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 8.1e-171 604.4 461 66.2
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 5.4e-167 591.7 499 61.1
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 9.3e-167 590.9 461 65.3
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 4.6e-166 588.6 503 61.4
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 8.7e-165 584.3 586 57.0
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 2.5e-164 582.8 440 66.8
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 4.3e-164 582.0 499 63.1
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 1.3e-163 580.5 499 61.7
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.1e-162 577.4 499 62.1
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 1.3e-160 570.5 535 57.8
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 2.7e-158 562.8 501 61.1
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 4.6e-158 562.0 521 58.3
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 8.1e-155 551.2 431 68.7
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 1.1e-154 550.8 513 59.3
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 1.2e-153 547.4 407 70.3
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 1.0e-144 517.7 418 62.2
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 2.2e-144 516.5 506 54.0
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 8.4e-144 514.6 500 57.2
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.3e-141 507.3 506 53.2
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 1.9e-140 503.4 502 57.4
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 8.2e-139 498.0 349 72.5
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.8e-133 480.3 516 54.3
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 5.1e-133 478.8 340 70.9
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 1.3e-128 464.2 475 52.2
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 1.4e-127 460.7 403 61.8
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 1.4e-122 444.1 410 56.6
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 4.2e-119 432.6 365 62.5
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 7.4e-116 421.8 326 65.0
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 5.0e-112 409.1 305 67.9
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 2.5e-111 406.8 242 82.6
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 2.5e-111 406.8 242 82.6
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 9.4e-111 404.8 240 85.0
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 3.5e-105 386.3 429 53.4
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 1.1e-103 381.3 346 58.7
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.2e-102 377.9 234 78.2
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 2.7e-102 376.7 349 57.3
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 4.7e-102 375.9 420 49.5
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 8.0e-94 348.6 279 64.2
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 5.7e-92 342.4 192 87.5
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 1.8e-85 320.9 328 54.3
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 1.3e-80 304.7 510 36.5
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 6.2e-78 295.8 346 49.7
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 2.3e-77 293.9 159 87.4
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 1.5e-76 291.2 520 36.7
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 1.9e-74 284.3 462 41.8
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 3.0e-72 276.9 266 51.9
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.3e-67 261.5 308 48.4
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.0e-64 251.9 143 89.5
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 6.6e-64 249.2 143 84.6
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.5e-63 247.3 143 87.4
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 3.2e-58 230.3 239 56.9
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 1.6e-57 228.0 134 86.6
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.9e-55 221.1 128 86.7
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-49 200.3 515 30.9
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.5e-41 173.7 98 86.7
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 1.1e-39 168.7 436 29.1
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 1.2e-36 158.7 170 48.8
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.4e-35 152.9 88 86.4
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.5e-33 147.1 92 81.5
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.5e-31 141.7 138 52.9
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 3.0e-24 117.5 257 34.2
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 5.3e-21 106.7 132 46.2
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.3e-19 102.1 159 42.1
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 5.0e-19 100.1 210 30.5
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 1.9e-18 98.2 258 29.8
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.6e-17 94.0 52 88.5
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 1.9e-15 88.2 45 88.9
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.4e-13 82.0 135 40.0
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 1.1e-07 62.4 318 25.5
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 2.6e-07 61.2 199 28.1
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 4.4e-07 60.5 32 100.0


User provided reference genes

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