Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_34636 Corchorus olitorius HOM05D006322 ORTHO05D007716 5.3e-133 477.6 231 100.0
Thecc.04G298700 Theobroma cacao HOM05D006322 ORTHO05D007716 3.6e-121 438.3 231 89.2
Duzib151G0960 Durio zibethinus HOM05D006322 ORTHO05D007716 2.4e-109 399.1 221 85.5
Duzib052G0456 Durio zibethinus HOM05D006322 ORTHO05D007716 4.1e-109 398.3 221 84.2
Gohir.A09G235000 Gossypium hirsutum HOM05D006322 ORTHO05D007716 1.4e-106 389.8 221 82.4
Gohir.D09G235800 Gossypium hirsutum HOM05D006322 ORTHO05D007716 1.9e-106 389.4 221 82.4
Gorai.006G258900 Gossypium raimondii HOM05D006322 ORTHO05D007716 1.6e-105 386.3 221 81.4
QL06p011774 Quercus lobata HOM05D006322 ORTHO05D007716 2.2e-102 375.9 229 77.3
Atru.chr4.3025 Acer truncatum HOM05D006322 ORTHO05D007716 1.8e-101 372.9 228 76.3
Haze_01283 Corylus avellana HOM05D006322 ORTHO05D007716 3.1e-101 372.1 228 76.8
Cfa015332 Carpinus fangiana HOM05D006322 ORTHO05D007716 4.5e-100 368.2 228 75.9
Ciclev10005751m.g Citrus clementina HOM05D006322 ORTHO05D007716 2.5e-98 362.5 237 72.6
MD16G1155500 Malus domestica HOM05D006322 ORTHO05D007716 8.0e-97 357.5 238 69.7
CiPaw.01G139400 Carya illinoinensis HOM05D006322 ORTHO05D007716 1.4e-96 356.7 213 75.6
TAR636G2967 Trochodendron aralioides HOM05D006322 ORTHO05D007716 2.3e-96 355.9 234 73.9
Manes.03G203000 Manihot esculenta HOM05D006322 ORTHO05D007716 3.0e-96 355.5 231 72.3
Oeu019970.1 Olea europaea HOM05D006322 ORTHO05D007716 1.2e-95 353.6 219 74.4
Actinidia40367 Actinidia chinensis HOM05D006322 ORTHO05D007716 1.3e-94 350.1 216 76.4
Peaxi162Scf00244g00413 Petunia axillaris HOM05D006322 ORTHO05D007716 1.3e-94 350.1 231 72.7
Sopen11g003410 Solanum pennellii HOM05D006322 ORTHO05D007716 1.3e-94 350.1 226 72.1
Migut.N00046 Erythranthe guttata HOM05D006322 ORTHO05D007716 1.7e-94 349.7 222 71.2
Solyc11g007570.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 4.8e-94 348.2 226 71.7
PGSC0003DMG400027315 Solanum tuberosum HOM05D006322 ORTHO05D007716 4.8e-94 348.2 219 72.6
Prupe.1G119400 Prunus persica HOM05D006322 ORTHO05D007716 3.1e-93 345.5 238 66.8
SGA_v2.0_scaffold119G32659 Striga asiatica HOM05D006322 ORTHO05D007716 1.2e-92 343.6 226 69.5
Glyma.17G032700 Glycine max HOM05D006322 ORTHO05D007716 1.6e-92 343.2 231 70.6
Nitab4.5_0001807g0060 Nicotiana tabacum HOM05D006322 ORTHO05D007716 2.0e-92 342.8 228 71.9
TWI09G0431 Tripterygium wilfordii HOM05D006322 ORTHO05D007716 7.7e-92 340.9 220 73.6
arahy.Tifrunner.gnm1.ann1.WPA2XH Arachis hypogaea HOM05D006322 ORTHO05D007716 1.7e-91 339.7 226 70.8
MSTRG.24817 Avicennia marina HOM05D006322 ORTHO05D007716 1.7e-91 339.7 222 69.8
FAN07G2163 Fragaria x ananassa HOM05D006322 ORTHO05D007716 3.8e-91 338.6 218 70.6
VMungo1215G3118 Vigna mungo HOM05D006322 ORTHO05D007716 3.8e-91 338.6 231 68.0
Cc03_g00960 Coffea canephora HOM05D006322 ORTHO05D007716 8.5e-91 337.4 233 68.2
Medtr4g121940 Medicago truncatula HOM05D006322 ORTHO05D007716 1.1e-90 337.0 228 68.4
CSS0012053 Camellia sinensis var. sinensis HOM05D006322 ORTHO05D007716 1.5e-90 336.7 224 70.1
arahy.Tifrunner.gnm1.ann1.57P81C Arachis hypogaea HOM05D006322 ORTHO05D007716 1.9e-90 336.3 226 69.9
Lju470A16T21 Lonicera japonica HOM05D006322 ORTHO05D007716 1.9e-90 336.3 212 74.5
SalBow5G5236 Salvia bowleyana HOM05D006322 ORTHO05D007716 1.9e-90 336.3 218 71.1
Cpa.g.sc9.74 Carica papaya HOM05D006322 ORTHO05D007716 3.2e-90 335.5 226 71.7
Eucgr.A00353 Eucalyptus grandis HOM05D006322 ORTHO05D007716 4.2e-90 335.1 214 73.4
Aqoxy2G02768 Aquilegia oxysepala HOM05D006322 ORTHO05D007716 7.2e-90 334.3 219 71.7
Nitab4.5_0002259g0050 Nicotiana tabacum HOM05D006322 ORTHO05D007716 7.2e-90 334.3 215 72.6
Psat4g024200 Pisum sativum HOM05D006322 ORTHO05D007716 7.2e-90 334.3 222 68.9
Lalb_Chr13g0298441 Lupinus albus HOM05D006322 ORTHO05D007716 9.4e-90 334.0 213 71.8
PGR031G3552 Punica granatum HOM05D006322 ORTHO05D007716 9.4e-90 334.0 228 69.7
CANSAT78G1173 Cannabis sativa HOM05D006322 ORTHO05D007716 1.2e-89 333.6 232 69.8
Phvul.003G113400 Phaseolus vulgaris HOM05D006322 ORTHO05D007716 1.2e-89 333.6 231 67.1
Lj4g0019910 Lotus japonicus HOM05D006322 ORTHO05D007716 1.6e-89 333.2 231 69.7
RcHm_v2.0_Chr4g0424801 Rosa chinensis HOM05D006322 ORTHO05D007716 1.6e-89 333.2 215 69.3
HanXRQChr13g0395571 Helianthus annuus HOM05D006322 ORTHO05D007716 2.7e-89 332.4 222 70.3
ECA233G0552 Erigeron canadensis HOM05D006322 ORTHO05D007716 8.0e-89 330.9 216 70.4
EL10Ac3g05469 Beta vulgaris HOM05D006322 ORTHO05D007716 8.8e-88 327.4 222 70.3
Nn3g21692 Nelumbo nucifera HOM05D006322 ORTHO05D007716 1.5e-87 326.6 230 69.1
Hma1.2p1_0078F.1_g040000 Hydrangea macrophylla HOM05D006322 ORTHO05D007716 2.6e-87 325.9 214 72.9
PSO357G0527 Papaver somniferum HOM05D006322 ORTHO05D007716 2.6e-87 325.9 225 67.1
Dinv44297 Davidia involucrata HOM05D006322 ORTHO05D007716 3.4e-87 325.5 196 79.1
Potri.008G106600 Populus trichocarpa HOM05D006322 ORTHO05D007716 4.4e-87 325.1 219 68.9
Psat4g024280 Pisum sativum HOM05D006322 ORTHO05D007716 1.7e-86 323.2 219 67.1
GSVIVG01035010001 Vitis vinifera HOM05D006322 ORTHO05D007716 1.7e-86 323.2 204 75.0
PSO170G6693 Papaver somniferum HOM05D006322 ORTHO05D007716 6.3e-86 321.2 225 68.0
Sabra08G0080400 Salix brachista HOM05D006322 ORTHO05D007716 1.1e-85 320.5 219 68.0
Sc25g0003310 Simmondsia chinensis HOM05D006322 ORTHO05D007716 5.4e-85 318.2 217 66.8
Ca_21447_v3 Cicer arietinum L. HOM05D006322 ORTHO05D007716 2.7e-84 315.8 231 63.6
Lsat_1_v5_gn_6_16821 Lactuca sativa HOM05D006322 ORTHO05D007716 3.5e-84 315.5 218 68.3
Carub.0003s1674 Capsella rubella HOM05D006322 ORTHO05D007716 3.8e-83 312.0 221 65.6
CsaV3_6G022370 Cucumis sativus L. HOM05D006322 ORTHO05D007716 5.0e-83 311.6 223 66.8
AL3G29970 Arabidopsis lyrata HOM05D006322 ORTHO05D007716 6.5e-83 311.2 221 65.6
BraA03t13148Z Brassica rapa HOM05D006322 ORTHO05D007716 1.1e-82 310.5 222 66.2
MBI19_g07237_MAGBIO Magnolia biondii HOM05D006322 ORTHO05D007716 1.5e-82 310.1 228 64.9
C03p48530 Brassica napus HOM05D006322 ORTHO05D007716 2.5e-82 309.3 223 65.5
vmacro08057 Vaccinium macrocarpon HOM05D006322 ORTHO05D007716 3.3e-82 308.9 212 67.9
BcaB04g18916 Brassica carinata HOM05D006322 ORTHO05D007716 4.2e-82 308.5 223 65.0
BcaC01g03797 Brassica carinata HOM05D006322 ORTHO05D007716 4.2e-82 308.5 223 65.0
BolC3t17131H Brassica oleracea HOM05D006322 ORTHO05D007716 4.2e-82 308.5 223 65.0
A03p40000 Brassica napus HOM05D006322 ORTHO05D007716 5.5e-82 308.1 222 65.8
Thhalv10021446m.g Eutrema salsugineum HOM05D006322 ORTHO05D007716 1.6e-81 306.6 228 61.8
Hund11963 Selenicereus undatus HOM05D006322 ORTHO05D007716 1.6e-81 306.6 213 64.3
AT3G16990 Arabidopsis thaliana HOM05D006322 ORTHO05D007716 2.8e-81 305.8 221 64.3
CARHR092240 Cardamine hirsuta HOM05D006322 ORTHO05D007716 2.8e-81 305.8 225 63.1
FAN12G2263 Fragaria x ananassa HOM05D006322 ORTHO05D007716 2.8e-81 305.8 198 70.2
MELO3C021273.2 Cucumis melo HOM05D006322 ORTHO05D007716 8.9e-80 300.8 223 65.0
DCAR_027007 Daucus carota HOM05D006322 ORTHO05D007716 8.9e-80 300.8 274 55.8
Sp3g15210 Schrenkiella parvula HOM05D006322 ORTHO05D007716 1.2e-79 300.4 216 63.9
Rhsim04G0234900 Rhododendron simsii HOM05D006322 ORTHO05D007716 1.5e-79 300.1 223 64.1
Aa31LG8G4030 Aethionema arabicum HOM05D006322 ORTHO05D007716 1.3e-78 297.0 223 61.9
ClCG06G004620 Citrullus lanatus HOM05D006322 ORTHO05D007716 1.8e-77 293.1 223 61.9
Sed0017771 Sechium edule HOM05D006322 ORTHO05D007716 2.4e-77 292.7 223 63.2
HPP92_001241 Vanilla planifolia HOM05D006322 ORTHO05D007716 1.2e-76 290.4 216 63.9
CAN.G135.71 Capsicum annuum HOM05D006322 ORTHO05D007716 3.5e-76 288.9 179 74.9
ATR0796G257 Amborella trichopoda HOM05D006322 ORTHO05D007716 2.3e-75 286.2 232 59.1
BcaB04g18918 Brassica carinata HOM05D006322 ORTHO05D007716 1.2e-73 280.4 223 60.5
FvH4_4g19550 Fragaria vesca HOM05D006322 ORTHO05D007716 3.6e-73 278.9 181 71.3
SEGI_24166 Sequoiadendron giganteum HOM05D006322 ORTHO05D007716 6.8e-72 274.6 217 61.3
Os03g0306900 Oryza sativa ssp. japonica HOM05D006322 ORTHO05D007716 2.6e-71 272.7 212 59.0
DCAR_030477 Daucus carota HOM05D006322 ORTHO05D007716 6.4e-70 268.1 226 58.8
Zm00001eb396140 Zea mays HOM05D006322 ORTHO05D007716 1.4e-69 266.9 212 58.0
AUR62041396 Chenopodium quinoa HOM05D006322 ORTHO05D007716 1.6e-68 263.5 176 71.6
SHI00180 Sapria himalayana HOM05D006322 ORTHO05D007716 1.6e-68 263.5 245 51.8
AUR62016124 Chenopodium quinoa HOM05D006322 ORTHO05D007716 2.5e-66 256.1 175 69.7
Peaxi162Scf00244g00510 Petunia axillaris HOM05D006322 ORTHO05D007716 1.2e-65 253.8 219 55.3
Actinidia27045 Actinidia chinensis HOM05D006322 ORTHO05D007716 4.7e-65 251.9 158 75.3
Ah.13g071980 Amaranthus hybridus HOM05D006322 ORTHO05D007716 4.0e-64 248.8 214 58.9
THA.LOC104802603 Tarenaya hassleriana HOM05D006322 ORTHO05D007716 1.7e-62 243.4 176 62.5
Solyc11g007560.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 5.1e-59 231.9 235 50.6
TAR362G0340 Trochodendron aralioides HOM05D006322 ORTHO05D007716 3.3e-58 229.2 215 52.6
CAN.G135.72 Capsicum annuum HOM05D006322 ORTHO05D007716 2.8e-57 226.1 239 49.0
SMO116G0484 Selaginella moellendorffii HOM05D006322 ORTHO05D007716 3.6e-57 225.7 216 49.5
TPR.G20694 Trifolium pratense HOM05D006322 ORTHO05D007716 3.1e-56 222.6 160 63.1
Mapoly0003s0261 Marchantia polymorpha HOM05D006322 ORTHO05D007716 3.4e-55 219.2 219 44.3
EL10Ac7g16563 Beta vulgaris HOM05D006322 ORTHO05D007716 1.9e-53 213.4 157 66.9
Nitab4.5_0001807g0070 Nicotiana tabacum HOM05D006322 ORTHO05D007716 2.7e-52 209.5 209 50.2
AagrBONN_evm.TU.Sc2ySwM_117.1930 Anthoceros agrestis HOM05D006322 ORTHO05D007716 3.5e-52 209.1 213 46.9
BcaB04g18915 Brassica carinata HOM05D001503 ORTHO05D003820 1.0e-51 207.6 188 55.9
Pp3c10_15580 Physcomitrium patens HOM05D006322 ORTHO05D007716 4.7e-49 198.7 218 45.9
Lalb_Chr20g0120881 Lupinus albus HOM05D006322 ORTHO05D007716 1.7e-46 190.3 141 60.3
PGSC0003DMG400040588 Solanum tuberosum HOM05D006322 ORTHO05D007716 1.0e-43 181.0 166 54.2
Actinidia15599 Actinidia chinensis HOM05D006322 ORTHO05D007716 1.9e-42 176.8 114 73.7
Atru.chr4.3023 Acer truncatum HOM05D006322 ORTHO05D007716 1.5e-34 150.6 82 85.4
CBR_g45493 Chara braunii HOM05D006322 ORTHO05D007716 1.3e-33 147.5 225 31.1
Glyma.07G240701 Glycine max HOM05D006322 ORTHO05D007716 1.3e-30 137.5 113 60.2
Cre09.g407600 Chlamydomonas reinhardtii HOM05D006322 ORTHO05D007716 1.4e-24 117.5 222 34.2
EL10Ac9g22265 Beta vulgaris HOM05D006322 ORTHO05D007716 3.1e-24 116.3 94 57.4
CANSAT54G0480 Cannabis sativa HOM05D006322 ORTHO05D007716 7.6e-15 85.1 96 51.0
Atru.chr4.2979 Acer truncatum HOM05D006322 ORTHO05D007716 3.8e-14 82.8 44 79.5
CBR_g56708 Chara braunii HOM05D009436 ORTHO05D000048 1.4e-13 80.9 123 30.9
BcaB04g18920 Brassica carinata HOM05D006322 ORTHO05D007716 9.3e-13 78.2 81 50.6
EL10Ac1g02106 Beta vulgaris HOM05D006322 ORTHO05D007716 7.9e-12 75.1 55 65.5
Lalb_Chr20g0120891 Lupinus albus HOM05D006322 ORTHO05D007716 1.6e-09 67.4 52 59.6
PSO782G2289 Papaver somniferum HOM05D000256 ORTHO05D000119 5.3e-08 62.4 46 56.5


User provided reference genes

Program Settings