Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_34522 Corchorus olitorius HOM05D000753 ORTHO05D017534 2.0e-40 168.7 87 100.0
Duzib212G0655 Durio zibethinus HOM05D000753 ORTHO05D003622 1.4e-25 119.4 93 71.0
Thecc.04G312300 Theobroma cacao HOM05D000753 ORTHO05D003622 5.2e-25 117.5 92 70.7
Duzib151G0280 Durio zibethinus HOM05D000753 ORTHO05D003622 1.4e-22 109.4 92 66.3
Gohir.D01G023595 Gossypium hirsutum HOM05D000753 ORTHO05D003622 1.2e-18 96.3 88 62.5
Gorai.002G032000 Gossypium raimondii HOM05D000753 ORTHO05D003622 1.2e-18 96.3 88 62.5
Gohir.A01G036200 Gossypium hirsutum HOM05D000753 ORTHO05D003622 2.8e-18 95.1 88 61.4
arahy.Tifrunner.gnm1.ann1.G9V4C0 Arachis hypogaea HOM05D000753 ORTHO05D003622 4.7e-18 94.4 76 64.5
Ca_26461_v3 Cicer arietinum L. HOM05D000753 ORTHO05D003622 2.4e-17 92.0 74 63.5
arahy.Tifrunner.gnm1.ann1.EDF5ZB Arachis hypogaea HOM05D000753 ORTHO05D003622 3.1e-17 91.7 76 63.2
Phvul.009G219500 Phaseolus vulgaris HOM05D000753 ORTHO05D003622 3.1e-17 91.7 76 61.8
Ciclev10005167m.g Citrus clementina HOM05D000753 ORTHO05D003622 4.0e-17 91.3 91 58.2
Lj6g0005825 Lotus japonicus HOM05D000753 ORTHO05D003622 5.2e-17 90.9 73 67.1
Glyma.09G078700 Glycine max HOM05D000753 ORTHO05D003622 6.8e-17 90.5 77 63.6
Gohir.A09G067300 Gossypium hirsutum HOM05D000753 ORTHO05D003622 1.5e-16 89.4 92 58.7
Gohir.D09G066900 Gossypium hirsutum HOM05D000753 ORTHO05D003622 2.6e-16 88.6 92 57.6
Glyma.15G188900 Glycine max HOM05D000753 ORTHO05D003622 4.4e-16 87.8 77 62.3
Medtr4g123900 Medicago truncatula HOM05D000753 ORTHO05D003622 4.4e-16 87.8 75 61.3
TPR.G12557 Trifolium pratense HOM05D000753 ORTHO05D003622 4.4e-16 87.8 75 61.3
Gorai.006G081400 Gossypium raimondii HOM05D000753 ORTHO05D003622 5.8e-16 87.4 92 57.6
Cpa.g.sc146.29 Carica papaya HOM05D000753 ORTHO05D003622 7.6e-16 87.0 79 67.1
CiPaw.01G129900 Carya illinoinensis HOM05D000753 ORTHO05D003622 7.6e-16 87.0 89 61.8
TWI09G0158 Tripterygium wilfordii HOM05D000753 ORTHO05D003622 9.9e-16 86.7 78 61.5
VMungo1309G2024 Vigna mungo HOM05D000753 ORTHO05D003622 9.9e-16 86.7 77 59.7
QL06p014135 Quercus lobata HOM05D000753 ORTHO05D003622 1.7e-15 85.9 73 67.1
Glyma.13G120000 Glycine max HOM05D000753 ORTHO05D003622 2.2e-15 85.5 74 56.8
Lalb_Chr11g0073531 Lupinus albus HOM05D000753 ORTHO05D003622 2.2e-15 85.5 73 63.0
Manes.03G211400 Manihot esculenta HOM05D000753 ORTHO05D003622 2.9e-15 85.1 79 64.6
MELO3C006748.2 Cucumis melo HOM05D000753 ORTHO05D003622 3.8e-15 84.7 91 58.2
Psat0s2012g0120 Pisum sativum HOM05D000753 ORTHO05D003622 3.8e-15 84.7 75 58.7
VMungo1215G1179 Vigna mungo HOM05D000753 ORTHO05D003622 3.8e-15 84.7 76 59.2
ClCG05G006840 Citrullus lanatus HOM05D000753 ORTHO05D003622 6.4e-15 84.0 74 63.5
Ca_21380_v3 Cicer arietinum L. HOM05D000753 ORTHO05D003622 8.4e-15 83.6 74 58.1
Ca_30148_v3 Cicer arietinum L. HOM05D000753 ORTHO05D003622 8.4e-15 83.6 74 58.1
TAR365G0528 Trochodendron aralioides HOM05D000753 ORTHO05D010249 1.1e-14 83.2 77 58.4
TAR365G0537 Trochodendron aralioides HOM05D000753 ORTHO05D003622 1.1e-14 83.2 78 59.0
GSVIVG01017682001 Vitis vinifera HOM05D000753 ORTHO05D003622 1.9e-14 82.4 80 61.2
ClCG04G007460 Citrullus lanatus HOM05D000753 ORTHO05D003622 2.4e-14 82.0 74 62.2
CsaV3_3G015490 Cucumis sativus L. HOM05D000753 ORTHO05D003622 2.4e-14 82.0 74 62.2
MELO3C003206.2 Cucumis melo HOM05D000753 ORTHO05D003622 3.2e-14 81.6 74 62.2
CARHR092750 Cardamine hirsuta HOM05D000753 ORTHO05D003622 4.2e-14 81.3 92 50.0
CsaV3_4G025800 Cucumis sativus L. HOM05D000753 ORTHO05D003622 4.2e-14 81.3 74 60.8
Dinv29515 Davidia involucrata HOM05D000753 ORTHO05D003622 4.2e-14 81.3 78 62.8
Sed0025915 Sechium edule HOM05D000753 ORTHO05D003622 4.2e-14 81.3 74 60.8
Phvul.003G121200 Phaseolus vulgaris HOM05D000753 ORTHO05D003622 9.2e-14 80.1 75 57.3
Atru.chr4.3141 Acer truncatum HOM05D000753 ORTHO05D003622 1.2e-13 79.7 73 61.6
DCAR_030422 Daucus carota HOM05D000753 ORTHO05D003622 1.2e-13 79.7 78 61.5
Glyma.17G040300 Glycine max HOM05D000753 ORTHO05D003622 1.6e-13 79.3 91 50.5
BolC5t33640H Brassica oleracea HOM05D000753 ORTHO05D003622 2.1e-13 79.0 92 48.9
Prupe.1G106200 Prunus persica HOM05D000753 ORTHO05D003622 2.1e-13 79.0 77 59.7
Cfa015724 Carpinus fangiana HOM05D000753 ORTHO05D003622 3.5e-13 78.2 88 55.7
BcaB04g20843 Brassica carinata HOM05D000753 ORTHO05D003622 4.6e-13 77.8 92 51.1
A01p36920 Brassica napus HOM05D000753 ORTHO05D003622 4.6e-13 77.8 92 48.9
BraA01t03751Z Brassica rapa HOM05D000753 ORTHO05D003622 4.6e-13 77.8 92 48.9
Thhalv10020956m.g Eutrema salsugineum HOM05D000753 ORTHO05D003622 4.6e-13 77.8 92 51.1
CANSAT78G2121 Cannabis sativa HOM05D000753 ORTHO05D003622 6.0e-13 77.4 86 51.2
BcaC09g48700 Brassica carinata HOM05D000753 ORTHO05D003622 7.8e-13 77.0 92 48.9
C01p46810 Brassica napus HOM05D000753 ORTHO05D003622 7.8e-13 77.0 92 48.9
BolC1t04654H Brassica oleracea HOM05D000753 ORTHO05D003622 7.8e-13 77.0 92 48.9
THA.LOC104802615 Tarenaya hassleriana HOM05D000753 ORTHO05D003622 7.8e-13 77.0 94 50.0
AT3G17430 Arabidopsis thaliana HOM05D000753 ORTHO05D003622 1.0e-12 76.6 92 50.0
BcaC07g38529 Brassica carinata HOM05D000753 ORTHO05D017534 1.0e-12 76.6 69 58.0
Lj6C700T8 Lonicera japonica HOM05D000753 ORTHO05D003622 1.0e-12 76.6 79 58.2
PSO210G5412 Papaver somniferum HOM05D000753 ORTHO05D003622 1.0e-12 76.6 95 50.5
Carub.0003s1715 Capsella rubella HOM05D000753 ORTHO05D003622 1.7e-12 75.9 92 48.9
AL3G30510 Arabidopsis lyrata HOM05D000753 ORTHO05D003622 3.0e-12 75.1 92 48.9
C04p33010 Brassica napus HOM05D000753 ORTHO05D017534 3.0e-12 75.1 69 58.0
BolC4t24864H Brassica oleracea HOM05D000753 ORTHO05D017534 3.0e-12 75.1 69 58.0
HanXRQChr09g0245821 Helianthus annuus HOM05D000753 ORTHO05D003622 3.0e-12 75.1 95 49.5
BcaC01g06826 Brassica carinata HOM05D000753 ORTHO05D017534 3.9e-12 74.7 69 56.5
BcaC02g10079 Brassica carinata HOM05D016796 ORTHO05D017534 3.9e-12 74.7 69 56.5
C08p51100 Brassica napus HOM05D000753 ORTHO05D017534 3.9e-12 74.7 69 56.5
BolC8t52636H Brassica oleracea HOM05D000753 ORTHO05D017534 3.9e-12 74.7 69 56.5
Eucgr.B03955 Eucalyptus grandis HOM05D000753 ORTHO05D003622 3.9e-12 74.7 78 52.6
BcaC05g28791 Brassica carinata HOM05D000753 ORTHO05D003622 5.1e-12 74.3 92 47.8
PSO832G0943 Papaver somniferum HOM05D000753 ORTHO05D003622 6.6e-12 73.9 95 49.5
Psat6g077920 Pisum sativum HOM05D003208 ORTHO05D009148 6.6e-12 73.9 65 58.5
Potri.010G001700 Populus trichocarpa HOM05D000753 ORTHO05D003622 6.6e-12 73.9 74 58.1
MD13G1141000 Malus domestica HOM05D000753 ORTHO05D003622 1.1e-11 73.2 77 57.1
Aa31LG8G4380 Aethionema arabicum HOM05D000753 ORTHO05D003622 1.5e-11 72.8 86 47.7
Sabra10G0001400 Salix brachista HOM05D000753 ORTHO05D003622 1.5e-11 72.8 86 53.5
Hund26619 Selenicereus undatus HOM05D000753 ORTHO05D003622 1.5e-11 72.8 96 50.0
MD16G1137100 Malus domestica HOM05D000753 ORTHO05D003622 1.9e-11 72.4 77 53.2
AL1G54820 Arabidopsis lyrata HOM05D000753 ORTHO05D003622 2.5e-11 72.0 91 49.5
CSS0042988 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 2.5e-11 72.0 77 55.8
Actinidia18504 Actinidia chinensis HOM05D000753 ORTHO05D003622 4.3e-11 71.2 76 55.3
AT1G48230 Arabidopsis thaliana HOM05D000753 ORTHO05D003622 5.6e-11 70.9 91 48.4
RcHm_v2.0_Chr4g0427391 Rosa chinensis HOM05D000753 ORTHO05D003622 5.6e-11 70.9 95 48.4
THA.LOC104821811 Tarenaya hassleriana HOM05D000753 ORTHO05D003622 9.6e-11 70.1 86 48.8
FvH4_4g21460 Fragaria vesca HOM05D000753 ORTHO05D003622 1.3e-10 69.7 95 46.3
Sc10g0008510 Simmondsia chinensis HOM05D000753 ORTHO05D003622 1.3e-10 69.7 68 57.4
Aa31LG10G5530 Aethionema arabicum HOM05D000753 ORTHO05D003622 1.6e-10 69.3 92 45.7
FAN12G3361 Fragaria x ananassa HOM05D000753 ORTHO05D003622 1.6e-10 69.3 73 53.4
CSS0036063 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 2.1e-10 68.9 77 58.4
Dinv18026 Davidia involucrata HOM05D000753 ORTHO05D003622 2.1e-10 68.9 86 52.3
Nn6g35752 Nelumbo nucifera HOM05D000753 ORTHO05D003622 2.1e-10 68.9 76 52.6
Sp3g15600 Schrenkiella parvula HOM05D000753 ORTHO05D003622 2.8e-10 68.6 92 47.8
Carub.0001s3737 Capsella rubella HOM05D000753 ORTHO05D003622 3.6e-10 68.2 91 47.3
FAN07G0388 Fragaria x ananassa HOM05D000753 ORTHO05D003622 3.6e-10 68.2 95 48.4
FAN17G2049 Fragaria x ananassa HOM05D000753 ORTHO05D003622 3.6e-10 68.2 95 48.4
Oeu037625.1 Olea europaea HOM05D000753 ORTHO05D003622 3.6e-10 68.2 73 53.4
Sp1g35190 Schrenkiella parvula HOM05D000753 ORTHO05D003622 3.6e-10 68.2 91 48.4
CARHR037860 Cardamine hirsuta HOM05D000753 ORTHO05D003622 4.8e-10 67.8 91 47.3
Aqoxy5G00334 Aquilegia oxysepala HOM05D000753 ORTHO05D003622 6.2e-10 67.4 77 48.1
AUR62039325 Chenopodium quinoa HOM05D000753 ORTHO05D003622 8.1e-10 67.0 69 53.6
Lalb_Chr08g0233031 Lupinus albus HOM05D000753 ORTHO05D003622 8.1e-10 67.0 74 56.8
Peaxi162Scf00166g00427 Petunia axillaris HOM05D000753 ORTHO05D003622 1.4e-09 66.2 78 48.7
Thhalv10011587m.g Eutrema salsugineum HOM05D000753 ORTHO05D003622 1.8e-09 65.9 91 45.1
Ah.05g168870 Amaranthus hybridus HOM05D000753 ORTHO05D003622 2.4e-09 65.5 66 60.6
BcaB04g17456 Brassica carinata HOM05D000753 ORTHO05D003622 4.0e-09 64.7 92 48.9
BcaC07g37162 Brassica carinata HOM05D000753 ORTHO05D003622 4.0e-09 64.7 92 48.9
A08p05000 Brassica napus HOM05D000753 ORTHO05D003622 4.0e-09 64.7 92 48.9
A08p05030 Brassica napus HOM05D000753 ORTHO05D003622 4.0e-09 64.7 92 48.9
C08p05330 Brassica napus HOM05D000753 ORTHO05D003622 4.0e-09 64.7 92 48.9
BraA08t32522Z Brassica rapa HOM05D000753 ORTHO05D003622 4.0e-09 64.7 92 48.9
CSS0038867 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 4.0e-09 64.7 78 48.7
Haze_00774 Corylus avellana HOM05D000753 ORTHO05D003622 4.0e-09 64.7 57 70.2
AUR62022452 Chenopodium quinoa HOM05D000753 ORTHO05D003622 5.3e-09 64.3 69 52.2
ECA246G1535 Erigeron canadensis HOM05D000753 ORTHO05D003622 6.9e-09 63.9 94 48.9
BcaB06g25846 Brassica carinata HOM05D000753 ORTHO05D017534 9.0e-09 63.5 64 53.1
DCAR_026950 Daucus carota HOM05D000753 ORTHO05D003622 1.5e-08 62.8 94 47.9
Sopen02g033590 Solanum pennellii HOM05D000753 ORTHO05D003622 1.5e-08 62.8 76 46.1
CAN.G497.100 Capsicum annuum HOM05D000753 ORTHO05D003622 2.0e-08 62.4 77 46.8
Eucgr.H04120 Eucalyptus grandis HOM05D000753 ORTHO05D003622 2.0e-08 62.4 72 51.4
Solyc02g088900.3 Solanum lycopersicum HOM05D000753 ORTHO05D003622 2.0e-08 62.4 76 46.1
DCAR_023400 Daucus carota HOM05D000753 ORTHO05D003622 2.6e-08 62.0 94 43.6
TAR633G1520 Trochodendron aralioides HOM05D000753 ORTHO05D003622 3.4e-08 61.6 59 49.2
EL10Ac1g01769 Beta vulgaris HOM05D000753 ORTHO05D003622 4.4e-08 61.2 68 55.9
CiPaw.08G084100 Carya illinoinensis HOM05D000753 ORTHO05D003622 4.4e-08 61.2 79 40.5
Actinidia06398 Actinidia chinensis HOM05D000753 ORTHO05D003622 5.8e-08 60.8 78 47.4
BcaC08g43015 Brassica carinata HOM05D000753 ORTHO05D003622 5.8e-08 60.8 91 44.0
A06p04620 Brassica napus HOM05D000753 ORTHO05D003622 5.8e-08 60.8 91 44.0
C06p02700 Brassica napus HOM05D000753 ORTHO05D003622 5.8e-08 60.8 91 44.0
BolC6t35396H Brassica oleracea HOM05D000753 ORTHO05D003622 5.8e-08 60.8 91 44.0
BraA06t23666Z Brassica rapa HOM05D000753 ORTHO05D003622 5.8e-08 60.8 91 44.0
DCAR_002549 Daucus carota HOM05D000753 ORTHO05D003622 5.8e-08 60.8 73 50.7
vmacro02364 Vaccinium macrocarpon HOM05D000753 ORTHO05D003622 5.8e-08 60.8 76 47.4
ATR1136G027 Amborella trichopoda HOM05D000753 ORTHO05D003622 7.6e-08 60.5 92 41.3
Nitab4.5_0007320g0030 Nicotiana tabacum HOM05D000753 ORTHO05D003622 7.6e-08 60.5 78 44.9
Cc01_g17330 Coffea canephora HOM05D000753 ORTHO05D003622 9.9e-08 60.1 79 45.6
Rhsim13G0000100 Rhododendron simsii HOM05D000753 ORTHO05D003622 1.3e-07 59.7 77 48.1
CSS0017685 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 1.7e-07 59.3 81 46.9
CAN.G398.22 Capsicum annuum HOM05D000753 ORTHO05D003622 1.7e-07 59.3 73 43.8
Dinv12092 Davidia involucrata HOM05D000753 ORTHO05D003622 1.7e-07 59.3 76 48.7
Hma1.2p1_1160F.1_g262520 Hydrangea macrophylla HOM05D000753 ORTHO05D003622 1.7e-07 59.3 74 52.7
Solyc02g066910.3 Solanum lycopersicum HOM05D000753 ORTHO05D003622 1.7e-07 59.3 73 43.8
Sopen02g016100 Solanum pennellii HOM05D000753 ORTHO05D003622 1.7e-07 59.3 73 43.8
MBI06_g17220_MAGBIO Magnolia biondii HOM05D000753 ORTHO05D003622 2.2e-07 58.9 72 47.2
Rhsim04G0247900 Rhododendron simsii HOM05D000753 ORTHO05D003622 2.2e-07 58.9 75 52.0
SGA_v2.0_scaffold449G51792 Striga asiatica HOM05D000753 ORTHO05D003622 2.2e-07 58.9 100 38.0
Oeu016619.1 Olea europaea HOM05D000753 ORTHO05D003622 2.9e-07 58.5 72 50.0
CiPaw.07G124100 Carya illinoinensis HOM05D000753 ORTHO05D003622 3.8e-07 58.2 75 38.7
Dinv33163 Davidia involucrata HOM05D000753 ORTHO05D003622 8.4e-07 57.0 76 44.7
Lsat_1_v5_gn_1_39900 Lactuca sativa HOM05D000753 ORTHO05D003622 8.4e-07 57.0 91 45.1
GSVIVG01028211001 Vitis vinifera HOM05D000753 ORTHO05D003622 1.1e-06 56.6 75 52.0
PGSC0003DMG400025156 Solanum tuberosum HOM05D000753 ORTHO05D003622 1.4e-06 56.2 73 42.5
SGA_v2.0_scaffold227G43199 Striga asiatica HOM05D000753 ORTHO05D003622 1.4e-06 56.2 99 37.4
BcaB07g33781 Brassica carinata HOM05D000753 ORTHO05D003622 2.4e-06 55.5 93 43.0
Nitab4.5_0003841g0030 Nicotiana tabacum HOM05D000753 ORTHO05D003622 2.4e-06 55.5 78 42.3
CDE07G1952 Ceratophyllum demersum HOM05D000753 ORTHO05D003622 7.1e-06 53.9 70 50.0
Potri.008G214300 Populus trichocarpa HOM05D000753 ORTHO05D003622 7.1e-06 53.9 89 43.8


User provided reference genes

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