Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 8.7e-154 547.0 282 100.0
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 2.1e-131 472.6 282 88.3
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.5e-129 466.5 281 85.8
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 5.7e-129 464.5 281 85.4
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 9.6e-129 463.8 281 85.4
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.1e-127 460.3 279 86.7
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.1e-108 397.1 285 75.8
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 4.2e-108 395.2 244 85.7
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 4.4e-105 385.2 272 76.1
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 4.8e-104 381.7 275 73.1
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.4e-103 380.2 259 77.2
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 9.1e-103 377.5 276 72.8
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.0e-101 374.0 283 71.0
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 1.7e-101 373.2 290 71.7
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 2.2e-101 372.9 281 71.5
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 2.9e-101 372.5 281 71.5
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 1.0e-98 364.0 285 69.1
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 2.3e-98 362.8 257 73.2
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 8.8e-98 360.9 285 70.5
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 5.7e-97 358.2 287 68.6
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 9.7e-97 357.5 287 70.7
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 2.2e-96 356.3 276 68.5
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 8.2e-96 354.4 286 70.3
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 1.4e-95 353.6 277 70.0
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 1.8e-95 353.2 244 74.6
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 5.3e-95 351.7 284 70.1
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 5.3e-95 351.7 284 70.1
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 2.6e-94 349.4 267 69.3
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 3.5e-94 349.0 250 74.0
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 7.7e-94 347.8 256 71.1
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.0e-93 347.4 279 67.4
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.0e-93 347.4 281 66.9
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 2.2e-93 346.3 261 70.1
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 5.0e-93 345.1 266 68.8
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 5.0e-93 345.1 263 70.7
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 6.5e-93 344.7 279 67.0
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 6.5e-93 344.7 272 65.8
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 1.1e-92 344.0 274 67.9
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 1.1e-92 344.0 263 70.0
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 1.5e-92 343.6 247 72.9
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 5.5e-92 341.7 247 72.5
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 9.4e-92 340.9 288 65.3
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 1.2e-91 340.5 261 69.0
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 2.1e-91 339.7 261 68.6
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 8.0e-91 337.8 278 65.8
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.0e-90 337.4 210 80.0
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 1.0e-90 337.4 247 71.3
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.0e-90 337.4 277 70.4
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 1.8e-90 336.7 245 71.0
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 6.8e-90 334.7 271 67.2
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.8e-90 334.3 271 67.2
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 8.8e-90 334.3 260 70.0
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.2e-89 334.0 288 67.0
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.5e-89 333.6 286 63.6
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 2.6e-89 332.8 245 71.4
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.4e-89 332.4 282 63.8
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 3.4e-89 332.4 245 73.5
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 4.4e-89 332.0 239 72.8
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.3e-88 330.5 243 73.3
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 2.2e-88 329.7 256 68.8
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.8e-88 329.3 202 81.2
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 3.7e-88 328.9 285 62.5
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 3.7e-88 328.9 232 74.1
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 6.3e-88 328.2 223 74.9
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 8.3e-88 327.8 238 71.0
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 8.3e-88 327.8 233 71.2
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.1e-87 327.4 232 73.7
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.1e-87 327.4 232 73.7
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 1.1e-87 327.4 202 81.2
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 1.4e-87 327.0 242 70.2
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 1.8e-87 326.6 275 65.5
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.8e-87 326.6 289 66.1
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.4e-87 326.2 233 71.7
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 3.1e-87 325.9 253 69.6
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 4.1e-87 325.5 248 69.8
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 9.1e-87 324.3 240 69.2
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 1.2e-86 323.9 201 79.1
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 2.7e-86 322.8 268 64.6
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 4.5e-86 322.0 247 69.2
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 1.0e-85 320.9 264 65.5
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 1.0e-85 320.9 272 65.8
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.3e-85 320.5 273 67.0
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.2e-85 319.7 234 71.8
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 2.9e-85 319.3 247 68.8
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 5.0e-85 318.5 277 65.0
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 8.5e-85 317.8 280 61.8
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 8.5e-85 317.8 272 68.8
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 1.1e-84 317.4 280 61.4
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.5e-84 317.0 280 66.8
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 1.5e-84 317.0 289 60.9
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 1.5e-84 317.0 266 64.3
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.5e-84 316.2 281 65.1
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 3.2e-84 315.8 277 64.6
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 4.2e-84 315.5 278 65.1
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 4.2e-84 315.5 229 72.9
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 7.2e-84 314.7 210 74.3
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 4.7e-83 312.0 203 76.8
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 4.7e-83 312.0 193 80.3
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 6.1e-83 311.6 279 64.2
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 2.3e-82 309.7 202 77.2
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.5e-81 307.0 219 71.7
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 2.6e-81 306.2 278 59.7
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 5.7e-81 305.1 226 70.8
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 1.1e-79 300.8 200 75.5
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.8e-79 300.1 238 66.0
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 1.3e-77 293.9 207 73.9
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 2.5e-76 289.7 233 67.8
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 5.6e-76 288.5 197 74.1
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.2e-75 287.3 186 77.4
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 4.7e-75 285.4 186 77.4
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.4e-74 283.9 211 66.8
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 3.4e-73 279.3 274 57.7
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 2.9e-72 276.2 177 75.7
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.8e-71 273.5 267 59.2
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 2.4e-71 273.1 198 68.7
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 5.4e-71 271.9 204 68.6
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 7.0e-71 271.6 177 75.7
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.6e-70 270.4 199 68.8
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 4.6e-70 268.9 200 68.5
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 2.9e-69 266.2 245 57.1
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 2.8e-67 259.6 179 72.6
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 1.8e-66 256.9 184 72.3
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 8.9e-66 254.6 270 58.9
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 1.0e-61 241.1 234 57.7
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 4.3e-60 235.7 186 68.3
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 7.3e-60 235.0 236 54.2
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 1.4e-58 230.7 221 53.8
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 2.3e-58 229.9 253 54.9
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 4.0e-58 229.2 237 52.3
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.7e-56 223.8 243 53.5
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 2.9e-56 223.0 165 67.3
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 2.9e-56 223.0 165 67.3
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 5.1e-53 212.2 200 60.0
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 2.3e-50 203.4 131 75.6
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 1.3e-45 187.6 110 81.8
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.8e-42 177.2 230 46.5
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 2.4e-42 176.8 199 48.7
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 3.4e-41 172.9 112 75.9
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 2.1e-35 153.7 91 82.4
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 2.8e-35 153.3 236 44.5
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.6e-33 146.7 195 47.2
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 4.2e-31 139.4 88 79.5
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 4.8e-27 125.9 199 38.2
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 9.0e-26 121.7 103 61.2
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 5.8e-25 119.0 209 39.2
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 1.7e-24 117.5 116 56.9
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.9e-23 114.0 205 34.6
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.6e-22 110.9 211 34.1
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 3.7e-19 99.8 70 68.6
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 1.4e-18 97.8 112 52.7
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 1.2e-17 94.7 66 71.2
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 3.8e-16 89.7 201 32.8
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 1.9e-12 77.4 113 46.0
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 2.5e-12 77.0 65 61.5
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.2e-09 68.2 46 71.7
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 4.5e-09 66.2 71 57.7
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 1.3e-08 64.7 56 62.5
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 1.3e-08 64.7 56 62.5
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 3.8e-08 63.2 151 33.1
C09p34930 Brassica napus HOM05D001108 ORTHO05D005418 5.0e-08 62.8 52 65.4


User provided reference genes

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