Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 4.2e-145 518.1 277 100.0
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 3.7e-125 451.8 277 85.9
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 5.4e-124 448.0 276 86.2
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 8.6e-122 440.7 277 83.4
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 4.3e-121 438.3 277 83.0
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 3.6e-120 435.3 277 82.3
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 2.3e-119 432.6 277 81.2
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 8.9e-119 430.6 277 81.2
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 1.2e-118 430.3 277 80.5
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 1.2e-118 430.3 274 81.4
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 1.5e-118 429.9 274 81.0
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.5e-118 429.9 277 80.9
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 1.5e-118 429.9 274 81.0
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 2.0e-118 429.5 277 80.9
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 2.0e-118 429.5 273 81.7
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 7.5e-118 427.6 274 80.7
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.3e-117 426.8 277 80.5
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 1.7e-117 426.4 272 82.0
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 2.2e-117 426.0 274 81.0
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 3.7e-117 425.2 274 80.3
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 1.4e-116 423.3 274 82.1
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 1.4e-116 423.3 277 80.1
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 5.4e-116 421.4 277 79.4
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 5.4e-116 421.4 277 79.4
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 1.2e-115 420.2 277 78.7
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 1.2e-115 420.2 277 79.4
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 3.5e-115 418.7 277 79.1
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 6.0e-115 417.9 272 79.8
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 7.8e-115 417.5 277 78.3
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.3e-114 416.8 277 78.7
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 2.3e-114 416.0 279 78.5
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 3.0e-114 415.6 272 81.6
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 1.5e-113 413.3 276 77.9
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 3.3e-113 412.1 275 80.0
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 3.3e-113 412.1 275 80.0
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 7.3e-113 411.0 277 76.9
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.2e-112 410.2 288 76.7
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.2e-112 410.2 277 76.9
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.2e-112 410.2 274 75.9
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 1.6e-112 409.8 276 77.5
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 2.1e-112 409.5 273 79.1
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 2.1e-112 409.5 275 78.9
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 3.6e-112 408.7 277 78.7
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 8.1e-112 407.5 274 77.0
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.1e-111 407.1 274 75.9
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 2.3e-111 406.0 277 77.6
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 4.0e-111 405.2 274 78.1
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 5.2e-111 404.8 275 78.5
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 5.2e-111 404.8 274 75.5
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 6.8e-111 404.4 277 76.9
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 8.9e-111 404.1 277 77.3
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 1.2e-110 403.7 275 76.7
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 2.0e-110 402.9 274 76.3
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 2.6e-110 402.5 277 77.6
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 2.6e-110 402.5 274 75.9
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 3.4e-110 402.1 277 77.3
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 3.4e-110 402.1 277 76.9
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 3.4e-110 402.1 276 77.2
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 3.4e-110 402.1 275 77.5
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 4.4e-110 401.7 275 77.1
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 5.8e-110 401.4 277 76.9
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 7.5e-110 401.0 272 76.8
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 7.5e-110 401.0 274 74.8
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 9.8e-110 400.6 277 76.9
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 9.8e-110 400.6 274 76.3
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 9.8e-110 400.6 277 76.5
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 9.8e-110 400.6 277 76.5
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 9.8e-110 400.6 275 77.5
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.3e-109 400.2 274 75.9
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.7e-109 399.8 277 76.5
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.7e-109 399.8 277 76.5
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.7e-109 399.8 277 76.5
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.2e-109 399.4 271 79.0
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 2.2e-109 399.4 274 75.5
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 2.9e-109 399.1 277 76.2
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 4.9e-109 398.3 277 76.5
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 4.9e-109 398.3 286 75.5
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 6.4e-109 397.9 271 78.2
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 2.4e-108 396.0 281 76.5
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 3.2e-108 395.6 271 76.4
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 4.1e-108 395.2 274 77.7
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 5.4e-108 394.8 275 75.3
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 2.7e-107 392.5 273 76.6
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 2.7e-107 392.5 281 74.4
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 1.7e-106 389.8 277 74.7
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.7e-106 389.8 277 74.7
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 6.6e-106 387.9 293 72.0
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.9e-105 386.3 278 74.1
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 1.9e-105 386.3 275 74.5
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.5e-105 386.0 272 73.9
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 3.3e-105 385.6 304 68.8
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.3e-103 379.4 273 75.1
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 6.8e-103 377.9 319 66.8
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.2e-102 377.1 272 73.2
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.0e-102 376.3 277 73.6
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 2.6e-102 375.9 272 73.2
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 7.6e-102 374.4 273 74.7
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 6.4e-101 371.3 336 63.7
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 1.1e-100 370.5 277 70.0
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 9.2e-100 367.5 291 68.0
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.2e-99 367.1 266 74.1
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 3.5e-99 365.5 273 71.1
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.7e-98 363.2 325 64.6
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.5e-97 360.1 268 72.0
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 4.7e-96 355.1 272 68.8
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 4.7e-96 355.1 366 57.7
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 6.2e-96 354.8 272 68.8
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.8e-95 353.2 273 69.6
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 2.0e-94 349.7 269 67.7
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 2.9e-93 345.9 266 70.7
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 6.4e-93 344.7 271 69.0
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 1.1e-92 344.0 264 67.8
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 3.9e-90 335.5 257 68.9
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 6.6e-90 334.7 266 66.9
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 1.4e-87 327.0 274 60.6
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 4.4e-86 322.0 211 79.1
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 1.7e-85 320.1 275 60.4
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-80 303.9 255 64.7
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 1.6e-80 303.5 266 61.7
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 4.8e-80 302.0 485 43.3
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.4e-79 300.4 485 43.1
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 1.8e-79 300.1 266 60.5
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 3.1e-79 299.3 255 64.7
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.0e-78 296.6 264 60.6
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 2.0e-78 296.6 259 68.0
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 3.4e-78 295.8 274 59.1
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 7.6e-78 294.7 264 60.2
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 1.7e-77 293.5 258 64.7
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 3.8e-77 292.4 259 64.9
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 1.9e-76 290.0 282 58.2
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 3.2e-76 289.3 282 58.5
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-75 287.3 282 58.5
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 7.9e-75 284.6 282 58.5
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 7.9e-75 284.6 278 57.2
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 5.1e-74 282.0 282 57.8
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 3.3e-73 279.3 263 57.8
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 1.1e-68 264.2 276 51.8
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.2e-68 262.3 300 55.7
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.0e-66 257.7 164 79.9
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 5.1e-66 255.4 256 58.2
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 5.1e-66 255.4 226 63.7
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 1.9e-65 253.4 280 54.6
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 1.9e-57 226.9 267 50.6
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 5.7e-57 225.3 147 76.9
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 4.5e-54 215.7 271 49.8
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 4.2e-52 209.1 252 50.4
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 3.9e-50 202.6 131 80.2
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 2.6e-49 199.9 267 47.2
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.5e-46 190.7 136 74.3
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 4.5e-46 189.1 131 74.8
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.6e-43 179.5 415 35.2
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 4.7e-43 179.1 228 50.0
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.0e-42 177.9 148 65.5
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 2.0e-41 173.7 138 63.0
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.8e-40 169.1 164 61.6
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 7.7e-38 161.8 96 85.4
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.1e-36 157.9 128 66.4
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.5e-36 155.6 101 79.2
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.0e-29 134.8 123 58.5
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 3.8e-29 132.9 268 34.7
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 4.2e-28 129.4 139 55.4
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 8.3e-24 115.2 290 29.3
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 3.1e-23 113.2 264 31.8
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 2.0e-22 110.5 73 82.2
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 5.5e-20 102.4 150 46.0
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.6e-19 99.8 68 72.1
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.6e-19 99.8 68 72.1
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 4.0e-18 96.3 69 71.0
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 4.0e-18 96.3 68 69.1
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 5.2e-18 95.9 65 73.8
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 6.8e-18 95.5 83 59.0
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 5.7e-17 92.4 111 51.4
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-16 90.5 52 88.5
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.2e-16 90.5 59 78.0
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 2.2e-16 90.5 71 66.2
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 2.8e-16 90.1 52 86.5
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 2.8e-16 90.1 52 86.5
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 6.3e-16 89.0 52 86.5
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 6.3e-16 89.0 68 61.8
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-15 87.8 52 86.5
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-14 84.7 50 84.0
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 1.2e-14 84.7 53 75.5
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.3e-10 70.5 48 72.9
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 2.6e-09 67.0 69 50.7
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.8e-07 60.8 40 75.0


User provided reference genes

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