Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 4.8e-185 651.7 543 100.0
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 1.5e-146 523.9 545 75.2
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 2.3e-139 500.0 543 72.9
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 3.1e-131 473.0 544 68.9
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 5.2e-131 472.2 545 64.8
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 3.0e-126 456.4 543 69.2
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 3.3e-125 453.0 543 69.1
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 3.6e-124 449.5 543 64.6
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 1.2e-122 444.5 546 60.8
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 2.4e-120 436.8 552 68.7
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 1.1e-117 427.9 544 60.3
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 2.8e-116 423.3 561 63.6
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 6.2e-116 422.2 548 67.2
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 2.4e-112 410.2 552 62.0
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 1.2e-111 407.9 546 58.8
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 1.6e-111 407.5 548 60.6
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 2.1e-111 407.1 546 57.5
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 2.1e-111 407.1 557 62.1
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 4.6e-111 406.0 548 58.6
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 4.6e-111 406.0 546 64.1
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 4.6e-111 406.0 544 61.6
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.7e-110 404.1 545 58.9
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 8.7e-110 401.7 546 60.6
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 1.5e-109 401.0 521 65.8
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 2.1e-108 397.1 553 57.9
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 8.1e-108 395.2 548 57.3
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 1.1e-107 394.8 537 59.2
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 2.4e-107 393.7 548 59.5
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.4e-107 393.7 546 58.6
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 5.3e-107 392.5 550 60.2
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 6.9e-107 392.1 551 58.1
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 6.9e-107 392.1 548 61.3
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 1.2e-106 391.3 539 60.5
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.5e-106 391.0 558 60.2
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 3.4e-106 389.8 545 64.0
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.4e-106 389.8 548 61.1
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 9.9e-106 388.3 547 63.6
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.3e-105 387.9 545 58.5
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 6.4e-105 385.6 545 55.2
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 6.4e-105 385.6 573 63.0
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 1.1e-104 384.8 547 64.0
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 1.4e-104 384.4 544 65.8
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 3.2e-104 383.3 559 60.3
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 4.2e-104 382.9 549 59.6
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 9.3e-104 381.7 550 62.5
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 1.2e-103 381.3 544 57.9
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 2.1e-103 380.6 548 57.8
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 4.6e-103 379.4 545 58.5
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 7.9e-103 378.6 590 55.4
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 3.9e-102 376.3 545 54.5
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 1.9e-101 374.0 543 61.9
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 7.3e-101 372.1 543 66.3
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 9.6e-101 371.7 567 52.9
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 4.8e-100 369.4 557 57.6
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.4e-99 367.9 554 59.9
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 2.4e-99 367.1 548 60.0
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.4e-99 367.1 544 58.6
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 3.1e-99 366.7 545 61.5
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 5.3e-99 365.9 547 58.9
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 9.0e-99 365.2 582 51.7
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 2.0e-98 364.0 550 58.0
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 5.8e-98 362.5 548 59.7
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 7.6e-98 362.1 549 64.3
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 6.4e-97 359.0 563 56.3
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 8.4e-97 358.6 563 55.8
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 1.9e-96 357.5 553 60.8
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.4e-96 357.1 544 61.0
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.2e-96 356.7 545 64.2
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 9.3e-96 355.1 545 62.6
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 6.0e-95 352.4 551 59.5
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 7.9e-95 352.1 544 61.6
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 8.7e-94 348.6 545 61.1
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 1.9e-93 347.4 567 58.9
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 9.6e-93 345.1 555 53.9
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 1.8e-91 340.9 548 59.7
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.8e-91 340.9 545 53.9
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 2.4e-91 340.5 550 58.0
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 4.5e-90 336.3 549 56.3
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 1.1e-88 331.6 557 60.3
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.2e-88 330.1 542 55.0
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 3.5e-87 326.6 552 58.0
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 2.3e-86 323.9 548 59.7
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.1e-85 321.6 556 52.5
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 9.6e-85 318.5 548 60.9
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 3.7e-84 316.6 552 52.9
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 6.3e-84 315.8 555 54.6
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 4.5e-82 309.7 488 58.8
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 5.9e-82 309.3 595 52.4
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 3.8e-81 306.6 552 54.3
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 5.5e-80 302.8 553 63.3
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 6.1e-79 299.3 556 54.0
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 6.1e-79 299.3 558 58.4
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 1.3e-78 298.1 566 53.7
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.1e-77 295.0 546 56.2
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 2.5e-77 293.9 576 52.8
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 5.7e-77 292.7 559 49.7
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 9.7e-77 292.0 556 51.4
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 4.8e-76 289.7 560 53.2
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 5.9e-74 282.7 567 53.8
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 2.9e-73 280.4 549 51.9
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 4.2e-72 276.6 552 47.8
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 9.4e-72 275.4 558 50.9
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 9.4e-72 275.4 553 48.8
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 2.1e-71 274.2 589 46.7
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 4.6e-71 273.1 558 50.4
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 6.1e-71 272.7 566 47.7
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 1.4e-70 271.6 466 54.9
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 2.5e-69 267.3 169 83.4
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 9.7e-69 265.4 165 84.2
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 3.7e-68 263.5 170 81.8
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 4.8e-68 263.1 160 83.8
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 8.2e-68 262.3 572 49.7
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 1.5e-66 258.1 555 49.0
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 2.0e-66 257.7 595 52.9
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 2.9e-65 253.8 184 75.5
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.1e-64 251.9 179 77.1
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 2.6e-61 240.7 154 81.2
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 5.0e-57 226.5 191 66.5
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 8.5e-57 225.7 459 48.6
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 6.1e-55 219.5 497 45.1
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 1.3e-52 211.8 164 72.6
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 4.0e-46 190.3 501 48.1
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 3.1e-43 180.6 543 38.3
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 5.5e-40 169.9 124 75.0
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 7.2e-40 169.5 433 44.8
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 4.9e-36 156.8 120 72.5
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 9.5e-32 142.5 202 59.9
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 2.8e-31 141.0 284 48.6
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 6.8e-30 136.3 109 73.4
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.5e-29 135.2 127 65.4
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 2.0e-26 124.8 112 66.1
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.9e-24 118.2 205 72.2
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 9.5e-24 115.9 506 42.9
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 2.8e-23 114.4 130 61.5
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 4.7e-23 113.6 81 66.7
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.4e-22 112.1 106 58.5
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 1.8e-22 111.7 106 65.1
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 4.1e-19 100.5 164 39.6
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.2e-18 99.0 64 81.2
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 5.0e-17 93.6 103 57.3
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.5e-16 91.3 100 58.0
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.2e-13 82.4 73 64.4
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.2e-13 82.4 73 64.4
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 4.4e-13 80.5 58 79.3
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 1.1e-11 75.9 86 52.3
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.1e-11 75.9 116 47.4
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.4e-11 75.5 46 80.4
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 3.3e-08 64.3 158 32.9
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 5.6e-08 63.5 116 63.8
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 9.5e-08 62.8 76 55.3
PRCOL_00003170 Prasinoderma coloniale HOM05D004889 ORTHO05D005478 8.9e-06 56.2 167 34.1


User provided reference genes

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