Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_33184 Corchorus olitorius HOM05D005086 ORTHO05D005980 9.9e-58 226.5 108 100.0
Duzib116G0169 Durio zibethinus HOM05D005086 ORTHO05D005980 1.6e-52 209.1 108 91.7
Gohir.A02G067100 Gossypium hirsutum HOM05D005086 ORTHO05D005980 2.1e-52 208.8 108 89.8
Gorai.005G082700 Gossypium raimondii HOM05D005086 ORTHO05D005980 2.1e-52 208.8 108 89.8
Duzib093G1227 Durio zibethinus HOM05D005086 ORTHO05D005980 1.8e-51 205.7 108 90.7
Thecc.08G143300 Theobroma cacao HOM05D005086 ORTHO05D005980 2.4e-51 205.3 108 88.9
Gohir.D02G073300 Gossypium hirsutum HOM05D005086 ORTHO05D005980 5.3e-51 204.1 108 88.0
Atru.chr13.1691 Acer truncatum HOM05D005086 ORTHO05D005980 6.4e-49 197.2 108 84.3
Glyma.14G202400 Glycine max HOM05D005086 ORTHO05D005980 6.4e-49 197.2 108 86.1
VMungo0647G0181 Vigna mungo HOM05D005086 ORTHO05D005980 6.4e-49 197.2 108 85.2
MELO3C008415.2 Cucumis melo HOM05D005086 ORTHO05D005980 2.4e-48 195.3 108 84.3
CsaV3_6G031010 Cucumis sativus L. HOM05D005086 ORTHO05D005980 3.2e-48 194.9 108 83.3
Phvul.001G063800 Phaseolus vulgaris HOM05D005086 ORTHO05D005980 4.2e-48 194.5 108 83.3
CANSAT80G0700 Cannabis sativa HOM05D005086 ORTHO05D005980 1.2e-47 193.0 108 81.5
Ca_12658_v3 Cicer arietinum L. HOM05D005086 ORTHO05D005980 1.2e-47 193.0 108 82.4
Dinv41130 Davidia involucrata HOM05D005086 ORTHO05D005980 1.2e-47 193.0 108 83.3
CSS0017168 Camellia sinensis var. sinensis HOM05D005086 ORTHO05D005980 1.6e-47 192.6 108 84.3
GSVIVG01010019001 Vitis vinifera HOM05D005086 ORTHO05D005980 1.6e-47 192.6 108 81.5
Medtr1g029350 Medicago truncatula HOM05D005086 ORTHO05D005980 2.7e-47 191.8 108 82.4
QL02p025654 Quercus lobata HOM05D005086 ORTHO05D005980 2.7e-47 191.8 108 80.6
ClCG08G006410 Citrullus lanatus HOM05D005086 ORTHO05D005980 3.5e-47 191.4 108 82.4
DCAR_001547 Daucus carota HOM05D005086 ORTHO05D005980 3.5e-47 191.4 108 82.4
Duzib041G0632 Durio zibethinus HOM05D005086 ORTHO05D005980 3.5e-47 191.4 108 80.6
CiPaw.16G018300 Carya illinoinensis HOM05D005086 ORTHO05D005980 4.6e-47 191.0 108 81.5
Cpa.g.sc49.73 Carica papaya HOM05D005086 ORTHO05D005980 1.0e-46 189.9 108 84.3
TWI74G0391 Tripterygium wilfordii HOM05D005086 ORTHO05D005980 1.0e-46 189.9 108 81.5
TAR625G0035 Trochodendron aralioides HOM05D005086 ORTHO05D005980 1.0e-46 189.9 108 80.6
vmacro00889 Vaccinium macrocarpon HOM05D005086 ORTHO05D005980 1.0e-46 189.9 108 81.5
TPR.G33329 Trifolium pratense HOM05D005086 ORTHO05D005980 1.3e-46 189.5 108 82.4
Ciclev10001104m.g Citrus clementina HOM05D005086 ORTHO05D005980 1.8e-46 189.1 108 80.6
Ah.05g167500 Amaranthus hybridus HOM05D005086 ORTHO05D005980 2.3e-46 188.7 108 78.7
CiPaw.15G022200 Carya illinoinensis HOM05D005086 ORTHO05D005980 2.3e-46 188.7 108 80.6
Lj4A690G48 Lonicera japonica HOM05D005086 ORTHO05D005980 2.3e-46 188.7 108 80.6
Thecc.08G143500 Theobroma cacao HOM05D005086 ORTHO05D005980 3.0e-46 188.3 108 79.6
vmacro00876 Vaccinium macrocarpon HOM05D005086 ORTHO05D005980 3.9e-46 188.0 108 80.6
Aqoxy6G00340 Aquilegia oxysepala HOM05D005086 ORTHO05D005980 5.1e-46 187.6 108 81.5
MD05G1012600 Malus domestica HOM05D005086 ORTHO05D005980 5.1e-46 187.6 108 81.5
Manes.02G174400 Manihot esculenta HOM05D005086 ORTHO05D005980 5.1e-46 187.6 108 79.6
arahy.Tifrunner.gnm1.ann1.AQ25H9 Arachis hypogaea HOM05D005086 ORTHO05D005980 6.7e-46 187.2 108 78.7
FAN20G2551 Fragaria x ananassa HOM05D005086 ORTHO05D005980 6.7e-46 187.2 108 80.6
Lj2g0027047 Lotus japonicus HOM05D005086 ORTHO05D005980 8.7e-46 186.8 108 78.7
MBI06_g41412_MAGBIO Magnolia biondii HOM05D005086 ORTHO05D005980 8.7e-46 186.8 108 79.6
Hund26734 Selenicereus undatus HOM05D005086 ORTHO05D005980 8.7e-46 186.8 108 78.7
Sed0020214 Sechium edule HOM05D005086 ORTHO05D005980 1.1e-45 186.4 108 79.6
arahy.Tifrunner.gnm1.ann1.1CL4KB Arachis hypogaea HOM05D005086 ORTHO05D005980 1.5e-45 186.0 108 77.8
Lj1g0013822 Lotus japonicus HOM05D005086 ORTHO05D005980 1.5e-45 186.0 108 79.6
SGA_v2.0_scaffold24G10385 Striga asiatica HOM05D005086 ORTHO05D005980 1.5e-45 186.0 108 79.6
MSTRG.1377 Avicennia marina HOM05D005086 ORTHO05D005980 1.9e-45 185.7 108 79.6
EL10As10g23958 Beta vulgaris HOM05D005086 ORTHO05D005980 1.9e-45 185.7 108 77.8
Cc10_g12980 Coffea canephora HOM05D005086 ORTHO05D005980 1.9e-45 185.7 108 77.8
FAN15G0455 Fragaria x ananassa HOM05D005086 ORTHO05D005980 1.9e-45 185.7 108 79.6
Oeu025719.1 Olea europaea HOM05D005086 ORTHO05D005980 1.9e-45 185.7 108 77.8
Prupe.8G017900 Prunus persica HOM05D005086 ORTHO05D005980 1.9e-45 185.7 108 80.6
Oeu046001.1 Olea europaea HOM05D005086 ORTHO05D005980 2.5e-45 185.3 108 79.6
MD10G1012500 Malus domestica HOM05D005086 ORTHO05D005980 5.6e-45 184.1 108 78.7
Cfa018373 Carpinus fangiana HOM05D005086 ORTHO05D005980 7.4e-45 183.7 108 79.6
Eucgr.E02380 Eucalyptus grandis HOM05D005086 ORTHO05D005980 7.4e-45 183.7 108 78.7
HanXRQChr05g0160791 Helianthus annuus HOM05D005086 ORTHO05D005980 7.4e-45 183.7 108 76.9
MBI06_g35967_MAGBIO Magnolia biondii HOM05D005086 ORTHO05D005980 7.4e-45 183.7 108 78.7
Potri.005G187400 Populus trichocarpa HOM05D005086 ORTHO05D005980 7.4e-45 183.7 108 80.6
Sed0007666 Sechium edule HOM05D005086 ORTHO05D005980 7.4e-45 183.7 106 81.1
Migut.C01051 Erythranthe guttata HOM05D005086 ORTHO05D005980 9.6e-45 183.3 108 75.9
FvH4_2g14790 Fragaria vesca HOM05D005086 ORTHO05D005980 9.6e-45 183.3 108 78.7
Hma1.2p1_0107F.1_g051390 Hydrangea macrophylla HOM05D005086 ORTHO05D005980 9.6e-45 183.3 108 79.6
HPP92_013480 Vanilla planifolia HOM05D005086 ORTHO05D005980 9.6e-45 183.3 108 79.6
Actinidia16590 Actinidia chinensis HOM05D005086 ORTHO05D005980 1.3e-44 183.0 108 79.6
Sabra05G0143000 Salix brachista HOM05D005086 ORTHO05D005980 1.6e-44 182.6 108 79.6
Lalb_Chr20g0118701 Lupinus albus HOM05D005086 ORTHO05D005980 2.1e-44 182.2 108 79.6
Rhsim11G0077300 Rhododendron simsii HOM05D005086 ORTHO05D005980 2.1e-44 182.2 108 77.8
RcHm_v2.0_Chr1g0331511 Rosa chinensis HOM05D005086 ORTHO05D005980 2.1e-44 182.2 107 79.4
PSO675G1430 Papaver somniferum HOM05D005086 ORTHO05D005980 2.8e-44 181.8 108 76.9
Potri.002G072300 Populus trichocarpa HOM05D005086 ORTHO05D005980 2.8e-44 181.8 108 80.6
Sabra02G0056900 Salix brachista HOM05D005086 ORTHO05D005980 2.8e-44 181.8 108 80.6
Manes.18G086500 Manihot esculenta HOM05D005086 ORTHO05D005980 3.7e-44 181.4 108 78.7
RcHm_v2.0_Chr6g0277351 Rosa chinensis HOM05D005086 ORTHO05D005980 4.8e-44 181.0 108 78.7
Nn5g28611 Nelumbo nucifera HOM05D005086 ORTHO05D005980 8.2e-44 180.3 108 77.8
SalBow7G2754 Salvia bowleyana HOM05D005086 ORTHO05D005980 8.2e-44 180.3 108 78.7
Nitab4.5_0000445g0110 Nicotiana tabacum HOM05D005086 ORTHO05D005980 2.4e-43 178.7 108 76.9
CSS0007222 Camellia sinensis var. sinensis HOM05D005086 ORTHO05D005980 3.1e-43 178.3 108 77.8
CDE08G0515 Ceratophyllum demersum HOM05D005086 ORTHO05D005980 3.1e-43 178.3 108 75.9
Nitab4.5_0004095g0020 Nicotiana tabacum HOM05D005086 ORTHO05D005980 4.0e-43 177.9 108 76.9
PSO541G4886 Papaver somniferum HOM05D005086 ORTHO05D005980 5.3e-43 177.6 107 73.8
Peaxi162Scf00263g00031 Petunia axillaris HOM05D005086 ORTHO05D005980 9.0e-43 176.8 108 76.9
Sc20g0003350 Simmondsia chinensis HOM05D005086 ORTHO05D005980 9.0e-43 176.8 107 74.8
PGR044G0933 Punica granatum HOM05D005086 ORTHO05D005980 1.2e-42 176.4 108 74.1
SEGI_35480 Sequoiadendron giganteum HOM05D005086 ORTHO05D005980 1.2e-42 176.4 108 75.0
ATR1136G054 Amborella trichopoda HOM05D005086 ORTHO05D005980 2.0e-42 175.6 108 77.8
unitig_82.g27089 Utricularia gibba HOM05D005086 ORTHO05D005980 2.0e-42 175.6 108 75.0
Haze_17696 Corylus avellana HOM05D006773 ORTHO05D005980 3.4e-42 174.9 103 80.6
Thhalv10007584m.g Eutrema salsugineum HOM05D005086 ORTHO05D005980 4.5e-42 174.5 108 73.1
Lsat_1_v5_gn_6_96840 Lactuca sativa HOM05D005086 ORTHO05D005980 4.5e-42 174.5 108 74.1
BcaB03g12814 Brassica carinata HOM05D000987 ORTHO05D005980 5.8e-42 174.1 108 72.2
Solyc04g064680.4 Solanum lycopersicum HOM05D005086 ORTHO05D005980 7.6e-42 173.7 108 74.1
Sopen04g026640 Solanum pennellii HOM05D005086 ORTHO05D005980 7.6e-42 173.7 108 74.1
BraA06t24847Z Brassica rapa HOM05D005086 ORTHO05D005980 1.0e-41 173.3 108 72.2
BraA08t34827Z Brassica rapa HOM05D005086 ORTHO05D005980 1.0e-41 173.3 108 73.1
PSO675G5177 Papaver somniferum HOM05D005086 ORTHO05D005980 1.0e-41 173.3 107 72.0
FAN24G0253 Fragaria x ananassa HOM05D006773 ORTHO05D005980 1.3e-41 172.9 106 76.4
PGSC0003DMG400024814 Solanum tuberosum HOM05D005086 ORTHO05D005980 1.3e-41 172.9 108 74.1
BcaB07g32137 Brassica carinata HOM05D005086 ORTHO05D005980 2.2e-41 172.2 108 72.2
BcaC05g26055 Brassica carinata HOM05D005086 ORTHO05D005980 2.2e-41 172.2 108 72.2
C05p20340 Brassica napus HOM05D005086 ORTHO05D005980 2.2e-41 172.2 108 72.2
BolC5t30730H Brassica oleracea HOM05D005086 ORTHO05D005980 2.2e-41 172.2 108 72.2
BolC8t49724H Brassica oleracea HOM05D005086 ORTHO05D005980 2.2e-41 172.2 108 72.2
Sp1g19010 Schrenkiella parvula HOM05D005086 ORTHO05D005980 2.9e-41 171.8 108 73.1
THA.LOC104812071 Tarenaya hassleriana HOM05D005086 ORTHO05D005980 4.9e-41 171.0 108 73.1
AL1G34590 Arabidopsis lyrata HOM05D005086 ORTHO05D005980 8.4e-41 170.2 108 72.2
Aa31LG7G5420 Aethionema arabicum HOM05D005086 ORTHO05D005980 1.1e-40 169.9 108 72.2
AagrBONN_evm.TU.Sc2ySwM_228.5615 Anthoceros agrestis HOM05D005086 ORTHO05D005980 1.4e-40 169.5 108 70.4
AT1G21480 Arabidopsis thaliana HOM05D005086 ORTHO05D005980 1.4e-40 169.5 108 72.2
BcaC07g39103 Brassica carinata HOM05D005086 ORTHO05D005980 1.9e-40 169.1 108 72.2
SHI09486 Sapria himalayana HOM05D005086 ORTHO05D005980 2.5e-40 168.7 108 70.4
A06p17510 Brassica napus HOM05D005086 ORTHO05D005980 3.2e-40 168.3 108 71.3
Carub.0001s2088 Capsella rubella HOM05D005086 ORTHO05D005980 3.2e-40 168.3 108 71.3
CARHR021850 Cardamine hirsuta HOM05D005086 ORTHO05D005980 3.2e-40 168.3 108 71.3
CAN.G2.46 Capsicum annuum HOM05D005086 ORTHO05D005980 5.5e-40 167.5 108 73.1
THA.LOC104810043 Tarenaya hassleriana HOM05D005086 ORTHO05D005980 3.9e-38 161.4 108 68.5
A08p28940 Brassica napus HOM05D005086 ORTHO05D005980 5.1e-38 161.0 135 59.3
Peaxi162Scf00263g00036 Petunia axillaris HOM05D005086 ORTHO05D005980 1.1e-37 159.8 108 71.3
ECA246G0400 Erigeron canadensis HOM05D006773 ORTHO05D005980 1.5e-37 159.5 102 69.6
C08p20850 Brassica napus HOM05D005086 ORTHO05D005980 3.7e-36 154.8 135 57.0
Pp3c14_16130 Physcomitrium patens HOM05D005086 ORTHO05D005980 1.1e-35 153.3 108 64.8
Nn1g06227 Nelumbo nucifera HOM05D005086 ORTHO05D005980 1.4e-35 152.9 86 83.7
SMO174G0205 Selaginella moellendorffii HOM05D005086 ORTHO05D005980 4.1e-35 151.4 108 63.0
AUR62030231 Chenopodium quinoa HOM05D005086 ORTHO05D005980 2.6e-34 148.7 88 76.1
AUR62027615 Chenopodium quinoa HOM05D005086 ORTHO05D005980 5.9e-34 147.5 88 75.0
Zm00001eb147610 Zea mays HOM05D005086 ORTHO05D005980 5.0e-33 144.4 94 71.3
Actinidia15165 Actinidia chinensis HOM05D005086 ORTHO05D005980 4.2e-32 141.4 84 79.8
CDE08G0561 Ceratophyllum demersum HOM05D005086 ORTHO05D005980 1.9e-29 132.5 85 70.6
CDE02G2042 Ceratophyllum demersum HOM05D005086 ORTHO05D005980 4.3e-29 131.3 85 70.6
SGA_v2.0_scaffold48G17939 Striga asiatica HOM05D005086 ORTHO05D005980 4.2e-24 114.8 63 76.2
Glyma.14G120700 Glycine max HOM05D005086 ORTHO05D005980 1.5e-08 63.2 59 62.7
Peaxi162Scf00575g00313 Petunia axillaris HOM05D000623 ORTHO05D002156 2.7e-07 58.9 108 29.6
COL.COLO4_09293 Corchorus olitorius HOM05D000623 ORTHO05D002156 3.6e-07 58.5 107 33.6
Lj1g0001747 Lotus japonicus HOM05D000623 ORTHO05D002156 3.6e-07 58.5 100 36.0
CBR_g471 Chara braunii HOM05D000001 ORTHO05D001247 6.1e-07 57.8 96 27.1
Gohir.A06G053300 Gossypium hirsutum HOM05D000191 ORTHO05D000122 1.0e-06 57.0 70 42.9
Glyma.06G193900 Glycine max HOM05D000623 ORTHO05D002156 1.4e-06 56.6 87 35.6
QL10p017015 Quercus lobata HOM05D000623 ORTHO05D002156 1.4e-06 56.6 87 36.8
Ca_13781_v3 Cicer arietinum L. HOM05D000623 ORTHO05D002156 3.0e-06 55.5 87 35.6
Ciclev10010628m.g Citrus clementina HOM05D000191 ORTHO05D000122 3.0e-06 55.5 78 35.9
Medtr3g037720 Medicago truncatula HOM05D000623 ORTHO05D002156 4.0e-06 55.1 87 35.6
Nitab4.5_0000613g0110 Nicotiana tabacum HOM05D000623 ORTHO05D002156 4.0e-06 55.1 109 26.6
Nitab4.5_0004148g0050 Nicotiana tabacum HOM05D000623 ORTHO05D002156 4.0e-06 55.1 103 33.0
Lsat_1_v5_gn_4_108500 Lactuca sativa HOM05D000623 ORTHO05D002156 6.7e-06 54.3 92 31.5
Nitab4.5_0001623g0010 Nicotiana tabacum HOM05D000623 ORTHO05D002156 6.7e-06 54.3 98 31.6
Psat5g203440 Pisum sativum HOM05D000623 ORTHO05D002156 6.7e-06 54.3 87 34.5
MD15G1165200 Malus domestica HOM05D000191 ORTHO05D000122 8.8e-06 53.9 78 38.5
TWI34G1508 Tripterygium wilfordii HOM05D000191 ORTHO05D000122 8.8e-06 53.9 78 38.5


User provided reference genes

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