Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 3971.8 1987 100.0
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 3212.2 1997 82.1
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 3077.0 1995 79.0
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 3044.6 1996 78.4
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 2969.9 2029 76.5
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2404.0 2028 63.0
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 2363.2 2004 63.1
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 2358.2 2005 62.7
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 2325.8 2002 62.1
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2308.9 2000 61.0
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2301.9 1990 61.8
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 2294.2 2003 61.2
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2275.7 2013 60.3
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2270.4 1992 61.2
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 2266.9 1995 60.0
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2258.0 2006 60.8
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2253.0 2004 60.9
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2239.9 2012 60.2
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2239.2 1979 60.7
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2238.0 2024 59.5
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2232.6 2000 58.6
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 2230.7 2011 59.1
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2224.5 2021 59.9
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2216.8 2038 59.2
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2214.9 2028 59.6
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2207.9 1998 59.3
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2192.5 2030 58.0
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2161.3 2019 58.8
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 2146.7 2026 58.0
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 2134.0 1451 76.5
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 2129.0 1451 76.2
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2100.9 2024 58.3
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 2068.9 2028 56.4
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 2029.6 1999 55.7
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 2027.3 2011 55.2
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 2012.7 2030 54.7
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 2011.1 2002 55.2
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1992.2 2005 54.4
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1989.9 2011 55.1
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1979.1 2009 54.6
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1977.6 1998 54.6
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1967.6 2001 54.3
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1963.3 2008 54.2
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1950.6 2003 53.7
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1948.3 2000 53.2
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1925.6 2046 53.0
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1908.3 2005 52.9
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1907.1 2030 52.9
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1905.6 1999 52.8
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1902.1 1998 52.6
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1897.1 2015 52.9
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1894.4 2015 52.9
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1865.1 1994 52.5
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1810.4 1986 51.7
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1810.4 1992 51.9
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1805.4 1932 51.9
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1801.9 2013 50.2
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1800.4 1720 57.2
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1796.2 2006 50.5
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1793.5 2017 49.9
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1792.7 2026 50.5
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1790.0 1995 50.5
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1788.9 1997 51.2
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1785.4 1993 51.1
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1781.1 2015 50.2
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1779.6 1722 56.7
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1774.2 2019 49.8
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1769.2 1992 50.5
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1766.9 1994 50.8
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1760.7 1989 50.9
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1758.0 2067 48.9
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1749.9 1989 50.4
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1745.3 2016 50.4
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1741.5 1974 51.2
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1725.7 1993 50.1
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1716.0 1992 50.0
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1715.3 1992 50.2
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1714.1 1992 49.8
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1713.7 1992 49.9
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1705.3 1930 50.1
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1695.2 1927 49.5
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1687.2 2010 47.9
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1659.8 2026 46.9
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1638.6 1935 48.8
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1630.9 2008 46.0
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1626.3 1999 47.4
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1624.4 1943 48.1
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1604.7 2018 47.4
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1597.8 2127 44.8
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1572.8 1983 46.4
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1560.4 1784 49.5
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1488.0 2011 45.0
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 0.0e+00 1362.4 1203 60.6
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1348.6 2072 41.3
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1303.9 1732 44.4
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1182.9 2013 37.3
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1145.6 1705 42.1
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 0.0e+00 1087.0 2133 35.6
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.3e-285 986.9 1679 38.2
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 3.1e-274 949.9 1479 38.7
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 2.8e-246 857.1 2177 31.8
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 3.0e-224 783.9 2109 31.2
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 4.6e-217 760.0 675 61.9
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 5.1e-208 729.9 1990 31.4
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 7.4e-175 619.8 1204 33.8
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 3.8e-171 607.4 1721 29.2
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 4.7e-161 573.9 1894 26.5
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 5.2e-152 543.9 435 66.2
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 4.2e-146 524.2 394 65.0
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.8e-133 482.3 1141 32.8
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 2.1e-129 468.8 346 69.4
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 1.9e-122 445.7 277 82.3
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 5.6e-122 444.1 381 57.0
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.2e-119 436.4 436 54.6
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 5.0e-115 421.0 362 63.3
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 1.3e-99 369.8 269 68.0
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 1.9e-85 322.8 509 41.5
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 9.9e-79 300.4 198 73.7
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 4.0e-72 278.5 369 43.6
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 4.9e-70 271.6 252 59.5
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 1.8e-56 226.5 190 59.5
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 5.0e-54 218.4 214 55.6
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 3.6e-52 212.2 180 61.7
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 3.8e-46 192.2 504 30.0
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 4.4e-42 178.7 311 39.9
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 8.8e-35 154.5 178 53.4
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 6.3e-33 148.3 577 25.5
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 5.3e-32 145.2 83 77.1
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 9.4e-29 134.4 222 37.4
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 5.2e-27 128.6 330 27.0
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 2.0e-23 116.7 268 32.1
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 1.7e-22 113.6 64 87.5
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 2.9e-22 112.8 64 87.5
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 2.9e-22 112.8 64 87.5
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 2.8e-20 106.3 105 54.3
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 4.4e-18 99.0 64 73.4
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-18 98.6 98 45.9
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 1.7e-17 97.1 62 79.0
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 1.4e-16 94.0 68 79.4
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 3.1e-16 92.8 102 51.0
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 7.8e-15 88.2 125 40.8
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 1.2e-12 80.9 47 85.1
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.0e-11 77.8 55 67.3
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 2.9e-09 69.7 46 67.4


User provided reference genes

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