Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 7.1e-206 720.3 349 100.0
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 1.1e-187 659.8 350 91.1
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 3.3e-179 631.7 350 88.3
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 5.5e-174 614.4 348 85.3
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 9.3e-174 613.6 335 87.5
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.4e-169 599.0 347 83.6
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.1e-169 598.6 347 83.6
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.3e-167 593.2 347 83.3
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.6e-165 586.3 350 81.7
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.1e-165 584.3 350 81.1
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.9e-164 581.6 347 81.3
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.6e-162 576.2 350 80.0
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 9.0e-161 570.5 350 80.9
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.2e-160 570.1 350 79.7
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.5e-158 562.4 350 79.4
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 3.2e-158 562.0 356 76.7
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.2e-157 560.1 358 77.4
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 1.4e-156 556.6 354 76.8
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 1.8e-156 556.2 355 77.5
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.1e-155 553.5 350 76.6
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 2.6e-155 552.4 361 75.6
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.8e-154 548.9 357 76.2
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 6.3e-154 547.7 351 77.5
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 1.1e-153 547.0 348 77.3
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 2.4e-153 545.8 350 76.3
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 2.4e-153 545.8 347 76.7
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 5.3e-153 544.7 357 74.5
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.0e-152 542.7 358 75.1
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.0e-152 542.7 358 75.1
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.0e-152 542.7 372 73.1
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 2.6e-152 542.3 348 75.6
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 3.4e-152 542.0 355 75.8
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 1.0e-151 540.4 367 73.3
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 8.5e-151 537.3 349 75.4
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 1.1e-150 537.0 349 75.4
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.9e-150 536.2 361 74.2
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 4.2e-150 535.0 350 76.0
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.2e-149 533.5 376 70.7
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 2.1e-149 532.7 344 75.6
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 4.7e-149 531.6 350 74.0
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 6.1e-149 531.2 351 74.9
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 6.1e-149 531.2 353 73.9
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 7.9e-149 530.8 351 74.9
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.4e-148 530.0 375 71.2
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 6.7e-148 527.7 350 74.0
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 1.5e-147 526.6 348 73.0
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 4.4e-147 525.0 366 73.2
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 5.7e-147 524.6 358 71.2
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.3e-146 523.5 375 70.4
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 2.2e-146 522.7 355 71.3
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 2.8e-146 522.3 357 71.1
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 4.8e-146 521.5 340 75.0
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 6.3e-146 521.2 350 75.1
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 1.1e-145 520.4 356 74.2
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.1e-145 520.4 353 73.1
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 3.1e-145 518.8 359 71.0
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 4.1e-145 518.5 358 72.6
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 9.1e-145 517.3 377 70.0
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 3.5e-144 515.4 358 71.2
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 1.3e-143 513.5 355 71.5
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 1.3e-143 513.5 355 70.4
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 5.0e-143 511.5 360 70.8
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 5.0e-143 511.5 356 73.0
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 8.5e-143 510.8 356 69.7
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.5e-142 510.0 357 70.6
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.9e-142 509.6 356 69.9
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 4.2e-142 508.4 350 72.6
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 9.4e-142 507.3 354 69.2
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 1.2e-141 506.9 350 70.9
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 1.0e-140 503.8 358 69.8
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.0e-140 503.8 357 70.3
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.4e-140 503.4 355 72.4
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 2.3e-140 502.7 352 70.2
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 3.0e-140 502.3 351 71.2
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 4.0e-140 501.9 356 69.9
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 6.7e-140 501.1 351 70.9
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 8.8e-140 500.7 352 70.5
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 8.8e-140 500.7 357 68.9
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 2.0e-139 499.6 357 69.7
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 2.6e-139 499.2 358 67.9
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 3.3e-139 498.8 352 70.7
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 5.7e-139 498.0 351 70.7
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.7e-138 496.5 356 71.6
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 2.8e-138 495.7 371 67.9
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 2.8e-138 495.7 351 70.1
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 8.2e-138 494.2 351 70.1
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 1.1e-137 493.8 352 70.2
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 1.1e-137 493.8 368 69.3
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 3.1e-137 492.3 352 69.0
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 4.1e-137 491.9 352 69.3
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 5.3e-137 491.5 349 69.6
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 5.3e-137 491.5 349 69.6
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 2.0e-136 489.6 327 73.7
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 3.5e-136 488.8 326 71.8
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 1.7e-135 486.5 351 70.4
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.9e-134 483.0 343 69.7
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 1.9e-134 483.0 343 69.4
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 2.1e-133 479.6 343 69.1
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 8.0e-133 477.6 348 68.4
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.3e-132 476.1 353 68.8
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 2.6e-131 472.6 354 69.2
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 3.4e-131 472.2 341 69.8
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 2.8e-130 469.2 349 67.3
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 9.1e-129 464.2 375 62.7
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.2e-128 463.8 350 68.9
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 1.6e-128 463.4 349 67.0
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 3.5e-128 462.2 349 66.8
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 4.5e-128 461.8 349 66.8
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 1.3e-127 460.3 373 63.3
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 1.3e-127 460.3 356 64.3
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.8e-127 458.8 349 65.3
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 8.0e-125 451.1 349 63.9
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.2e-123 447.2 376 63.8
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 1.5e-123 446.8 328 69.5
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 1.5e-123 446.8 528 48.7
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 3.4e-123 445.7 367 61.0
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 1.4e-121 440.3 346 65.3
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 1.2e-120 437.2 369 58.8
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.6e-120 436.8 332 67.8
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 2.0e-120 436.4 314 68.2
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.0e-119 434.1 340 64.7
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 1.3e-119 433.7 358 62.3
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 3.3e-118 429.1 424 55.0
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 7.3e-118 427.9 354 60.2
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 8.3e-114 414.5 347 61.1
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 1.6e-112 410.2 369 58.5
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 3.3e-110 402.5 434 51.6
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.1e-108 396.0 331 60.1
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 5.8e-107 391.7 321 63.9
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 5.8e-107 391.7 416 51.7
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.9e-106 389.4 374 56.7
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 7.8e-104 381.3 366 53.8
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 7.5e-99 364.8 343 55.4
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 3.7e-98 362.5 349 56.7
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.1e-95 352.1 234 72.6
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 7.3e-86 321.6 392 45.2
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 4.0e-84 315.8 382 46.1
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 7.1e-81 305.1 227 73.1
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 9.9e-75 284.6 165 78.2
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 6.4e-74 282.0 308 52.6
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 6.4e-74 282.0 374 44.1
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 3.2e-73 279.6 374 44.7
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 8.7e-71 271.6 239 56.1
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 3.3e-70 269.6 255 56.1
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 3.3e-70 269.6 255 56.1
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.2e-67 261.2 219 66.2
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 4.5e-67 259.2 361 41.6
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 2.3e-63 246.9 388 37.9
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 3.9e-63 246.1 194 65.5
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.9e-62 243.8 220 62.7
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 1.8e-52 210.7 155 69.7
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 9.3e-49 198.4 135 74.1
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 5.7e-46 189.1 128 64.8
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 8.2e-37 158.7 100 74.0
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.4e-36 157.9 377 30.8
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 7.2e-33 145.6 122 58.2
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 3.9e-31 139.8 342 30.7
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 4.8e-29 132.9 72 77.8
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 1.5e-17 94.7 78 64.1
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.4e-15 88.2 63 69.8
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.6e-08 64.7 33 75.8


User provided reference genes

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