Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_32491 Corchorus olitorius HOM05D001896 ORTHO05D001862 7.0e-66 253.8 130 100.0
Thecc.02G119300 Theobroma cacao HOM05D001896 ORTHO05D001862 3.1e-29 132.1 130 61.5
Duzib052G0412 Durio zibethinus HOM05D001896 ORTHO05D001862 5.2e-29 131.3 140 60.0
Gohir.A12G018801 Gossypium hirsutum HOM05D001896 ORTHO05D001862 4.4e-20 101.7 140 50.0
QL11p029532 Quercus lobata HOM05D001896 ORTHO05D001862 1.3e-19 100.1 132 52.3
Gohir.D12G019300 Gossypium hirsutum HOM05D001896 ORTHO05D001862 1.1e-18 97.1 140 47.9
Gorai.008G019600 Gossypium raimondii HOM05D001896 ORTHO05D001862 1.1e-18 97.1 140 47.9
Ciclev10029922m.g Citrus clementina HOM05D001896 ORTHO05D001862 3.0e-16 89.0 122 50.0
CiPaw.05G020300 Carya illinoinensis HOM05D001896 ORTHO05D001862 3.9e-16 88.6 133 46.6
Eucgr.I01030 Eucalyptus grandis HOM05D001896 ORTHO05D001862 3.9e-16 88.6 134 45.5
Ciclev10029661m.g Citrus clementina HOM05D001896 ORTHO05D001862 1.9e-15 86.3 101 47.5
Ciclev10030063m.g Citrus clementina HOM05D001896 ORTHO05D001862 2.5e-15 85.9 122 49.2
Potri.009G086000 Populus trichocarpa HOM05D001896 ORTHO05D001862 4.3e-15 85.1 135 42.2
Nn6g34510 Nelumbo nucifera HOM05D001896 ORTHO05D001862 9.6e-15 84.0 129 47.3
Gohir.A03G181250 Gossypium hirsutum HOM05D001896 ORTHO05D001862 2.8e-14 82.4 123 39.8
CSS0026617 Camellia sinensis var. sinensis HOM05D001896 ORTHO05D001862 4.8e-14 81.6 143 42.0
Potri.001G290400 Populus trichocarpa HOM05D001896 ORTHO05D001862 6.2e-14 81.3 135 40.7
PGR142G1913 Punica granatum HOM05D001896 ORTHO05D001862 8.1e-14 80.9 133 43.6
Dinv42246 Davidia involucrata HOM05D001896 ORTHO05D001862 1.8e-13 79.7 132 41.7
TAR628G1651 Trochodendron aralioides HOM05D001896 ORTHO05D001862 2.4e-13 79.3 135 45.9
Ciclev10029578m.g Citrus clementina HOM05D001896 ORTHO05D001862 6.9e-13 77.8 105 49.5
Ciclev10030194m.g Citrus clementina HOM05D001896 ORTHO05D001862 6.9e-13 77.8 103 51.5
Dinv16071 Davidia involucrata HOM05D001896 ORTHO05D001862 9.0e-13 77.4 132 40.9
Duzib052G0328 Durio zibethinus HOM05D001896 ORTHO05D001862 2.0e-12 76.3 124 45.2
Gorai.005G230100 Gossypium raimondii HOM05D001896 ORTHO05D001862 2.0e-12 76.3 123 38.2
Manes.07G053000 Manihot esculenta HOM05D001896 ORTHO05D001862 2.0e-12 76.3 133 42.9
TAR381G1204 Trochodendron aralioides HOM05D001896 ORTHO05D001862 2.6e-12 75.9 135 46.7
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 4.4e-12 75.1 114 41.2
Duzib248G0396 Durio zibethinus HOM05D001896 ORTHO05D001862 4.4e-12 75.1 124 41.9
Gohir.D02G203218 Gossypium hirsutum HOM05D001896 ORTHO05D001862 4.4e-12 75.1 123 37.4
Prupe.8G148800 Prunus persica HOM05D001896 ORTHO05D001862 4.4e-12 75.1 142 40.8
Thecc.02G119200 Theobroma cacao HOM05D001896 ORTHO05D001862 4.4e-12 75.1 124 44.4
Dinv26948 Davidia involucrata HOM05D001896 ORTHO05D001862 7.6e-12 74.3 119 42.0
Manes.12G116200 Manihot esculenta HOM05D001896 ORTHO05D001862 7.6e-12 74.3 130 40.8
Manes.10G086000 Manihot esculenta HOM05D001896 ORTHO05D001862 9.9e-12 73.9 104 48.1
TAR625G0391 Trochodendron aralioides HOM05D001896 ORTHO05D001862 9.9e-12 73.9 129 48.1
Rhsim06G0063700 Rhododendron simsii HOM05D001896 ORTHO05D001862 1.3e-11 73.6 135 40.7
Actinidia32848 Actinidia chinensis HOM05D001896 ORTHO05D001862 1.7e-11 73.2 132 44.7
COL.COLO4_32492 Corchorus olitorius HOM05D001896 ORTHO05D001862 2.2e-11 72.8 123 43.1
Aqoxy6G02538 Aquilegia oxysepala HOM05D001896 ORTHO05D001862 2.9e-11 72.4 131 41.2
CiPaw.02G001600 Carya illinoinensis HOM05D001896 ORTHO05D001862 2.9e-11 72.4 115 45.2
Eucgr.I01031 Eucalyptus grandis HOM05D001896 ORTHO05D001862 2.9e-11 72.4 133 42.1
FvH4_2g03520 Fragaria vesca HOM05D001896 ORTHO05D001862 3.8e-11 72.0 137 40.9
Haze_10311 Corylus avellana HOM05D001896 ORTHO05D001862 4.9e-11 71.6 124 44.4
Duzib116G0259 Durio zibethinus HOM05D001896 ORTHO05D001862 8.4e-11 70.9 136 41.2
FAN24G1511 Fragaria x ananassa HOM05D001896 ORTHO05D001862 8.4e-11 70.9 137 40.1
Nitab4.5_0003129g0070 Nicotiana tabacum HOM05D001896 ORTHO05D001862 8.4e-11 70.9 125 41.6
Cfa013755 Carpinus fangiana HOM05D001896 ORTHO05D001862 1.4e-10 70.1 116 44.0
Potri.009G085900 Populus trichocarpa HOM05D001896 ORTHO05D037395 1.4e-10 70.1 166 38.6
Actinidia00358 Actinidia chinensis HOM05D004083 ORTHO05D005029 1.9e-10 69.7 111 44.1
Cpa.g.sc106.35 Carica papaya HOM05D001896 ORTHO05D001862 1.9e-10 69.7 135 37.0
CiPaw.01G002900 Carya illinoinensis HOM05D001896 ORTHO05D001862 1.9e-10 69.7 124 41.1
Oeu013335.1 Olea europaea HOM05D001896 ORTHO05D001862 1.9e-10 69.7 123 43.9
Thecc.01G074600 Theobroma cacao HOM05D001896 ORTHO05D001862 1.9e-10 69.7 105 44.8
Atru.chr5.2308 Acer truncatum HOM05D001896 ORTHO05D001862 2.4e-10 69.3 128 40.6
Prupe.6G218500 Prunus persica HOM05D001896 ORTHO05D001862 3.2e-10 68.9 136 43.4
Atru.chr3.1040 Acer truncatum HOM05D001896 ORTHO05D001862 4.2e-10 68.6 108 46.3
Actinidia10212 Actinidia chinensis HOM05D001896 ORTHO05D001862 4.2e-10 68.6 125 45.6
Sabra09G0066000 Salix brachista HOM05D001896 ORTHO05D037395 4.2e-10 68.6 163 38.7
Duzib147G1417 Durio zibethinus HOM05D001896 ORTHO05D001862 5.4e-10 68.2 111 41.4
MD02G1188200 Malus domestica HOM05D001896 ORTHO05D001862 5.4e-10 68.2 129 43.4
QL06p039341 Quercus lobata HOM05D001896 ORTHO05D001862 5.4e-10 68.2 125 41.6
Oeu021445.1 Olea europaea HOM05D001896 ORTHO05D001862 7.1e-10 67.8 122 45.1
Migut.H01320 Erythranthe guttata HOM05D001896 ORTHO05D001862 9.3e-10 67.4 112 34.8
Thecc.08G086000 Theobroma cacao HOM05D001896 ORTHO05D001862 9.3e-10 67.4 136 38.2
FAN24G1421 Fragaria x ananassa HOM05D000312 ORTHO05D001862 2.1e-09 66.2 149 34.9
Lj4P164T35 Lonicera japonica HOM05D001896 ORTHO05D001862 2.1e-09 66.2 136 41.2
MD15G1299400 Malus domestica HOM05D001896 ORTHO05D001862 2.1e-09 66.2 114 43.9
Nn5g30636 Nelumbo nucifera HOM05D001896 ORTHO05D001862 2.1e-09 66.2 128 44.5
COL.COLO4_11600 Corchorus olitorius HOM05D001896 ORTHO05D001862 2.7e-09 65.9 131 41.2
Manes.10G086100 Manihot esculenta HOM05D001896 ORTHO05D001862 2.7e-09 65.9 111 43.2
Duzib093G0976 Durio zibethinus HOM05D001896 ORTHO05D001862 3.5e-09 65.5 134 38.1
Manes.13G110000 Manihot esculenta HOM05D001896 ORTHO05D001862 3.5e-09 65.5 112 41.1
Peaxi162Scf00449g00045 Petunia axillaris HOM05D001896 ORTHO05D001862 3.5e-09 65.5 127 41.7
RcHm_v2.0_Chr6g0248901 Rosa chinensis HOM05D001896 ORTHO05D001862 4.6e-09 65.1 145 38.6
CiPaw.08G051100 Carya illinoinensis HOM05D001896 ORTHO05D001862 6.0e-09 64.7 125 43.2
Aqoxy6G02540 Aquilegia oxysepala HOM05D001896 ORTHO05D001862 7.8e-09 64.3 122 42.6
Lj7P110T16 Lonicera japonica HOM05D001896 ORTHO05D001862 7.8e-09 64.3 127 43.3
RcHm_v2.0_Chr2g0108431 Rosa chinensis HOM05D001896 ORTHO05D001862 7.8e-09 64.3 131 38.2
GSVIVG01009317001 Vitis vinifera HOM05D001896 ORTHO05D001862 7.8e-09 64.3 108 46.3
Cfa004148 Carpinus fangiana HOM05D001896 ORTHO05D001862 1.0e-08 63.9 129 38.8
Cc07_g07270 Coffea canephora HOM05D001896 ORTHO05D001862 1.0e-08 63.9 110 44.5
FvH4_2g03511 Fragaria vesca HOM05D001896 ORTHO05D001862 1.0e-08 63.9 149 34.2
Solyc02g092190.1 Solanum lycopersicum HOM05D001896 ORTHO05D001862 1.0e-08 63.9 122 42.6
Sopen02g036760 Solanum pennellii HOM05D001896 ORTHO05D001862 1.0e-08 63.9 122 42.6
Ciclev10026650m.g Citrus clementina HOM05D001896 ORTHO05D001862 2.3e-08 62.8 129 37.2
Ciclev10030311m.g Citrus clementina HOM05D001896 ORTHO05D001862 2.3e-08 62.8 121 38.0
Haze_15187 Corylus avellana HOM05D001896 ORTHO05D001862 2.3e-08 62.8 106 44.3
Duzib041G0206 Durio zibethinus HOM05D001896 ORTHO05D001862 2.3e-08 62.8 112 39.3
PGSC0003DMG400021410 Solanum tuberosum HOM05D001896 ORTHO05D001862 2.3e-08 62.8 109 41.3
Gohir.D11G209900 Gossypium hirsutum HOM05D001896 ORTHO05D001862 3.0e-08 62.4 95 41.1
Gorai.007G225100 Gossypium raimondii HOM05D001896 ORTHO05D001862 3.0e-08 62.4 95 41.1
CAN.G1075.50 Capsicum annuum HOM05D001896 ORTHO05D001862 3.9e-08 62.0 121 40.5
Duzib264G0605 Durio zibethinus HOM05D001896 ORTHO05D001862 5.1e-08 61.6 113 41.6
Eucgr.I00688 Eucalyptus grandis HOM05D001896 ORTHO05D001862 5.1e-08 61.6 106 43.4
Gohir.A01G123300 Gossypium hirsutum HOM05D001896 ORTHO05D001862 5.1e-08 61.6 128 39.8
Gohir.D01G110900 Gossypium hirsutum HOM05D001896 ORTHO05D001862 5.1e-08 61.6 128 39.8
Gorai.002G135700 Gossypium raimondii HOM05D001896 ORTHO05D001862 5.1e-08 61.6 128 39.8
Manes.18G048000 Manihot esculenta HOM05D001896 ORTHO05D001862 5.1e-08 61.6 136 36.8
Eucgr.H02316 Eucalyptus grandis HOM05D001896 ORTHO05D001862 6.6e-08 61.2 127 38.6
Eucgr.L02595 Eucalyptus grandis HOM05D001896 ORTHO05D001862 6.6e-08 61.2 135 38.5
Manes.05G182700 Manihot esculenta HOM05D001896 ORTHO05D001862 6.6e-08 61.2 139 37.4
PGSC0003DMG400021411 Solanum tuberosum HOM05D001896 ORTHO05D001862 6.6e-08 61.2 117 42.7
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 8.7e-08 60.8 122 41.0
FAN15G3436 Fragaria x ananassa HOM05D000312 ORTHO05D000221 8.7e-08 60.8 149 33.6
Gohir.A05G211200 Gossypium hirsutum HOM05D001896 ORTHO05D001862 8.7e-08 60.8 125 37.6
Potri.014G014500 Populus trichocarpa HOM05D001896 ORTHO05D001862 8.7e-08 60.8 83 45.8
Prupe.8G148600 Prunus persica HOM05D001896 ORTHO05D001862 1.1e-07 60.5 145 34.5
Nitab4.5_0003129g0080 Nicotiana tabacum HOM05D001896 ORTHO05D001862 1.5e-07 60.1 116 44.8
RcHm_v2.0_Chr6g0248931 Rosa chinensis HOM05D001896 ORTHO05D001862 1.5e-07 60.1 138 37.7
CAN.G1075.51 Capsicum annuum HOM05D001896 ORTHO05D001862 1.9e-07 59.7 122 39.3
FAN23G2360 Fragaria x ananassa HOM05D001896 ORTHO05D001862 1.9e-07 59.7 133 42.1
FAN26G2644 Fragaria x ananassa HOM05D001896 ORTHO05D001862 1.9e-07 59.7 133 41.4
FAN20G2517 Fragaria x ananassa HOM05D001896 ORTHO05D001862 2.5e-07 59.3 123 37.4
FAN24G0761 Fragaria x ananassa HOM05D000371 ORTHO05D001484 2.5e-07 59.3 123 37.4
Nitab4.5_0000142g0290 Nicotiana tabacum HOM05D001896 ORTHO05D001862 2.5e-07 59.3 112 46.4
Peaxi162Scf00340g00021 Petunia axillaris HOM05D001896 ORTHO05D001862 2.5e-07 59.3 106 45.3
Gohir.A11G213300 Gossypium hirsutum HOM05D001896 ORTHO05D001862 3.3e-07 58.9 97 40.2
Gorai.009G221200 Gossypium raimondii HOM05D001896 ORTHO05D001862 3.3e-07 58.9 131 38.9
Potri.001G290300 Populus trichocarpa HOM05D001896 ORTHO05D037395 3.3e-07 58.9 86 45.3
Potri.014G014600 Populus trichocarpa HOM05D001896 ORTHO05D001862 3.3e-07 58.9 101 47.5
PGR083G2885 Punica granatum HOM05D001896 ORTHO05D001862 3.3e-07 58.9 122 41.8
Gohir.D05G214500 Gossypium hirsutum HOM05D001896 ORTHO05D001862 4.3e-07 58.5 131 38.9
RcHm_v2.0_Chr6g0309871 Rosa chinensis HOM05D001896 ORTHO05D001862 4.3e-07 58.5 134 34.3
Ciclev10029735m.g Citrus clementina HOM05D001896 ORTHO05D001862 5.6e-07 58.2 79 45.6
Eucgr.I00689 Eucalyptus grandis HOM05D001896 ORTHO05D001862 5.6e-07 58.2 128 37.5
FvH4_2g32830 Fragaria vesca HOM05D001896 ORTHO05D001862 5.6e-07 58.2 123 37.4
FAN27G2593 Fragaria x ananassa HOM05D000371 ORTHO05D001484 5.6e-07 58.2 123 37.4
Gohir.A02G150400 Gossypium hirsutum HOM05D001896 ORTHO05D001862 5.6e-07 58.2 109 39.4
Oeu010455.1 Olea europaea HOM05D026127 ORTHO05D029209 5.6e-07 58.2 128 34.4
PSO017G0117 Papaver somniferum HOM05D001896 ORTHO05D001862 5.6e-07 58.2 129 38.0
PSO170G5938 Papaver somniferum HOM05D001896 ORTHO05D001862 5.6e-07 58.2 129 38.0
Cc10_g05130 Coffea canephora HOM05D001896 ORTHO05D001862 7.3e-07 57.8 142 32.4
Dinv44941 Davidia involucrata HOM05D001896 ORTHO05D001862 7.3e-07 57.8 138 37.0
FvH4_1g17980 Fragaria vesca HOM05D001896 ORTHO05D001862 7.3e-07 57.8 133 42.1
FAN19G1457 Fragaria x ananassa HOM05D001896 ORTHO05D001862 7.3e-07 57.8 133 42.1
Peaxi162Scf00548g00022 Petunia axillaris HOM05D001896 ORTHO05D001862 9.6e-07 57.4 116 40.5
CiPaw.07G173200 Carya illinoinensis HOM05D001896 ORTHO05D001862 1.3e-06 57.0 132 38.6
Nitab4.5_0002796g0030 Nicotiana tabacum HOM05D001896 ORTHO05D001862 1.3e-06 57.0 105 46.7
PGR004G2665 Punica granatum HOM05D001896 ORTHO05D001862 1.3e-06 57.0 132 38.6
Peaxi162Scf00548g00211 Petunia axillaris HOM05D001896 ORTHO05D001862 1.6e-06 56.6 103 42.7
Rhsim08G0092500 Rhododendron simsii HOM05D001896 ORTHO05D001862 1.6e-06 56.6 118 44.1
TWI56G0236 Tripterygium wilfordii HOM05D001896 ORTHO05D001862 1.6e-06 56.6 121 43.0
Atru.chr5.2309 Acer truncatum HOM05D001896 ORTHO05D001862 2.8e-06 55.8 112 38.4
DCAR_007834 Daucus carota HOM05D001896 ORTHO05D001862 2.8e-06 55.8 102 36.3
TWI12G1251 Tripterygium wilfordii HOM05D001896 ORTHO05D001862 2.8e-06 55.8 114 40.4
Lj4C73T24 Lonicera japonica HOM05D001896 ORTHO05D001862 3.6e-06 55.5 143 36.4
PGSC0003DMG400044830 Solanum tuberosum HOM05D001896 ORTHO05D001862 3.6e-06 55.5 39 61.5
Gorai.003G031600 Gossypium raimondii HOM05D001896 ORTHO05D001862 4.8e-06 55.1 109 39.4
Medtr4g097260 Medicago truncatula HOM05D001896 ORTHO05D001862 4.8e-06 55.1 108 39.8
Nitab4.5_0002379g0010 Nicotiana tabacum HOM05D001896 ORTHO05D001862 4.8e-06 55.1 111 37.8
Oeu037286.1 Olea europaea HOM05D026127 ORTHO05D029209 4.8e-06 55.1 96 38.5
Peaxi162Scf00160g00068 Petunia axillaris HOM05D001896 ORTHO05D001862 4.8e-06 55.1 115 37.4
Sopen04g031260 Solanum pennellii HOM05D001896 ORTHO05D001862 4.8e-06 55.1 115 41.7
Cpa.g.sc142.51 Carica papaya HOM05D001896 ORTHO05D001862 6.2e-06 54.7 136 36.0
ClCG01G017710 Citrullus lanatus HOM05D001896 ORTHO05D001862 6.2e-06 54.7 131 38.2
Ciclev10029877m.g Citrus clementina HOM05D001896 ORTHO05D001862 6.2e-06 54.7 74 50.0
Oeu039850.1 Olea europaea HOM05D001896 ORTHO05D001862 6.2e-06 54.7 95 43.2
Potri.002G117100 Populus trichocarpa HOM05D001896 ORTHO05D001862 6.2e-06 54.7 105 40.0
Zm00001eb117890 Zea mays HOM05D001896 ORTHO05D001862 6.2e-06 54.7 121 38.0
CAN.G1239.2 Capsicum annuum HOM05D001896 ORTHO05D001862 8.1e-06 54.3 115 40.0
Sabra14G0008700 Salix brachista HOM05D001896 ORTHO05D001862 8.1e-06 54.3 95 45.3
SalBow2G3314 Salvia bowleyana HOM05D001896 ORTHO05D001862 8.1e-06 54.3 104 43.3
Solyc04g077620.1 Solanum lycopersicum HOM05D001896 ORTHO05D001862 8.1e-06 54.3 107 43.9


User provided reference genes

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