Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 1.2e-91 339.7 167 100.0
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 6.9e-74 280.8 161 83.9
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 1.7e-72 276.2 159 85.5
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 2.4e-71 272.3 155 84.5
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 7.1e-71 270.8 155 83.9
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 7.1e-71 270.8 155 83.9
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 7.1e-71 270.8 161 83.2
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 3.3e-60 235.3 151 75.5
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 2.1e-59 232.6 155 71.0
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 3.7e-59 231.9 160 69.4
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 4.8e-59 231.5 164 69.5
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 2.4e-58 229.2 165 69.7
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 2.4e-58 229.2 160 68.1
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 4.0e-58 228.4 163 69.3
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 4.0e-58 228.4 160 67.5
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 6.9e-58 227.6 160 67.5
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 9.0e-58 227.3 160 67.5
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 2.0e-57 226.1 159 68.6
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 1.7e-56 223.0 153 69.3
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 1.7e-56 223.0 161 68.3
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 1.7e-56 223.0 162 67.3
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 2.2e-56 222.6 161 65.8
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 2.2e-56 222.6 166 66.9
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 2.9e-56 222.2 159 67.9
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 3.8e-56 221.9 152 69.1
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 6.4e-56 221.1 158 67.7
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 6.4e-56 221.1 158 69.0
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 1.9e-55 219.5 158 65.8
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 2.4e-55 219.2 158 67.1
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 5.5e-55 218.0 154 68.8
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 5.5e-55 218.0 161 64.6
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 7.1e-55 217.6 146 69.2
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 9.3e-55 217.2 151 68.9
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 9.3e-55 217.2 148 68.9
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 1.2e-54 216.9 155 66.5
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 3.5e-54 215.3 158 65.8
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 3.5e-54 215.3 158 65.8
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 3.5e-54 215.3 158 65.8
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 3.5e-54 215.3 151 66.9
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 3.5e-54 215.3 154 68.2
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 4.6e-54 214.9 157 65.6
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 6.0e-54 214.5 158 67.1
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 1.0e-53 213.8 149 68.5
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 1.0e-53 213.8 152 66.4
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 1.3e-53 213.4 150 68.7
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 1.8e-53 213.0 156 69.2
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 3.0e-53 212.2 157 67.5
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 3.9e-53 211.8 161 64.6
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 3.9e-53 211.8 158 64.6
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 3.9e-53 211.8 158 64.6
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 3.9e-53 211.8 158 64.6
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 3.9e-53 211.8 155 66.5
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 5.1e-53 211.5 160 65.0
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 6.7e-53 211.1 148 67.6
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 8.7e-53 210.7 159 65.4
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 8.7e-53 210.7 149 67.8
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.5e-52 209.9 148 66.2
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 1.5e-52 209.9 140 70.7
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 1.5e-52 209.9 153 66.0
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 1.9e-52 209.5 145 66.2
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 1.9e-52 209.5 148 65.5
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 2.5e-52 209.1 146 67.8
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 5.6e-52 208.0 158 62.7
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 7.4e-52 207.6 168 63.7
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 2.1e-51 206.1 137 73.0
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 2.1e-51 206.1 150 68.0
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 2.1e-51 206.1 146 67.1
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 4.8e-51 204.9 154 62.3
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 4.8e-51 204.9 143 65.0
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 3.1e-50 202.2 151 68.2
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 3.1e-50 202.2 148 68.9
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 4.0e-50 201.8 156 62.8
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 9.0e-50 200.7 160 63.1
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 1.2e-49 200.3 161 62.1
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 2.0e-49 199.5 144 64.6
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 4.5e-49 198.4 144 68.8
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 4.5e-49 198.4 148 64.9
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 2.2e-48 196.1 157 61.1
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 2.9e-48 195.7 146 65.1
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 4.2e-47 191.8 148 65.5
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 6.0e-46 188.0 143 66.4
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 5.1e-45 184.9 143 63.6
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 8.7e-45 184.1 145 60.7
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 1.9e-44 183.0 147 58.5
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 9.7e-44 180.6 147 59.9
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 1.3e-43 180.3 147 59.9
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 1.1e-42 177.2 160 56.2
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 4.1e-42 175.3 143 58.0
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 5.0e-40 168.3 140 57.1
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 3.2e-39 165.6 144 55.6
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 1.8e-37 159.8 138 52.9
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 3.3e-36 155.6 111 66.7
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 1.7e-35 153.3 169 51.5
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 2.4e-34 149.4 153 51.6
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 6.9e-34 147.9 137 54.0
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 6.9e-34 147.9 155 51.6
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 2.0e-33 146.4 150 50.7
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 6.5e-32 141.4 136 49.3
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 9.4e-31 137.5 136 49.3
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 4.7e-30 135.2 115 61.7
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 1.8e-29 133.3 153 46.4
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 2.3e-29 132.9 105 62.9
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 2.3e-29 132.9 104 63.5
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 4.4e-28 128.6 101 61.4
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 3.1e-26 122.5 152 45.4
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 3.0e-21 105.9 143 42.7
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 1.6e-17 93.6 155 36.8
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 2.0e-17 93.2 158 36.7
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 2.6e-17 92.8 88 54.5
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 3.5e-17 92.4 124 38.7
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 3.5e-17 92.4 107 49.5
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 1.5e-15 87.0 79 57.0
COL.COLO4_02194 Corchorus olitorius HOM05D001568 ORTHO05D009161 3.1e-10 69.3 106 38.7
Cfa026913 Carpinus fangiana HOM05D001568 ORTHO05D009161 2.5e-07 59.7 204 30.4


User provided reference genes

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