Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_32291 Corchorus olitorius HOM05D003700 ORTHO05D004160 1.1e-63 246.5 128 100.0
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 2.2e-40 169.1 86 98.8
COL.COLO4_35537 Corchorus olitorius HOM05D003700 ORTHO05D004160 6.7e-21 104.4 122 51.6
Duzib205G1944 Durio zibethinus HOM05D003700 ORTHO05D004160 8.8e-13 77.4 117 43.6
Thecc.03G087800 Theobroma cacao HOM05D003700 ORTHO05D004160 2.6e-12 75.9 120 45.0
COL.COLO4_35889 Corchorus olitorius HOM05D003700 ORTHO05D004160 2.8e-11 72.4 40 92.5
Gohir.D03G093300 Gossypium hirsutum HOM05D003700 ORTHO05D004160 8.3e-11 70.9 116 41.4
Gorai.003G097200 Gossypium raimondii HOM05D003700 ORTHO05D004160 8.3e-11 70.9 116 41.4
FAN04G3111 Fragaria x ananassa HOM05D003700 ORTHO05D004160 1.1e-10 70.5 117 42.7
FAN13G0273 Fragaria x ananassa HOM05D003700 ORTHO05D004160 1.1e-10 70.5 117 42.7
Gohir.A03G066800 Gossypium hirsutum HOM05D003700 ORTHO05D004160 1.4e-10 70.1 113 45.1
FAN08G2213 Fragaria x ananassa HOM05D003700 ORTHO05D004160 1.8e-10 69.7 113 42.5
FvH4_5g14920 Fragaria vesca HOM05D003700 ORTHO05D004160 2.4e-10 69.3 117 41.9
FAN13G0167 Fragaria x ananassa HOM05D003700 ORTHO05D004160 4.1e-10 68.6 117 42.7
FAN18G4275 Fragaria x ananassa HOM05D003700 ORTHO05D004160 5.4e-10 68.2 113 40.7
RcHm_v2.0_Chr7g0181461 Rosa chinensis HOM05D003700 ORTHO05D004160 2.7e-09 65.9 106 43.4
Haze_07324 Corylus avellana HOM05D003700 ORTHO05D004160 5.9e-09 64.7 42 64.3
Potri.013G021800 Populus trichocarpa HOM05D003700 ORTHO05D004160 5.9e-09 64.7 37 73.0
Cfa018940 Carpinus fangiana HOM05D003700 ORTHO05D004160 1.3e-08 63.5 42 64.3
Glyma.05G026600 Glycine max HOM05D003700 ORTHO05D004160 1.3e-08 63.5 53 56.6
MD06G1193500 Malus domestica HOM05D003700 ORTHO05D004160 1.3e-08 63.5 37 70.3
Dinv19966 Davidia involucrata HOM05D003700 ORTHO05D004160 2.2e-08 62.8 118 38.1
Peaxi162Scf00013g00333 Petunia axillaris HOM05D003700 ORTHO05D004160 2.2e-08 62.8 38 71.1
Potri.005G033100 Populus trichocarpa HOM05D003700 ORTHO05D004160 3.8e-08 62.0 36 72.2
CSS0035089 Camellia sinensis var. sinensis HOM05D022698 ORTHO05D004160 5.0e-08 61.6 116 36.2
Ciclev10022133m.g Citrus clementina HOM05D003700 ORTHO05D004160 5.0e-08 61.6 112 38.4
Gohir.A11G031331 Gossypium hirsutum HOM05D003700 ORTHO05D004160 5.0e-08 61.6 60 51.7
Actinidia37626 Actinidia chinensis HOM05D003700 ORTHO05D004160 6.5e-08 61.2 40 67.5
Gohir.A11G031511 Gossypium hirsutum HOM05D003700 ORTHO05D004160 6.5e-08 61.2 60 51.7
Manes.06G092100 Manihot esculenta HOM05D003700 ORTHO05D004160 6.5e-08 61.2 37 64.9
AL8G39330 Arabidopsis lyrata HOM05D003700 ORTHO05D004160 8.5e-08 60.8 37 67.6
BcaB02g09647 Brassica carinata HOM05D003700 ORTHO05D004160 8.5e-08 60.8 47 55.3
CSS0045012 Camellia sinensis var. sinensis HOM05D022698 ORTHO05D004160 8.5e-08 60.8 118 34.7
AUR62021675 Chenopodium quinoa HOM05D003700 ORTHO05D004160 1.1e-07 60.5 96 40.6
Gorai.007G037700 Gossypium raimondii HOM05D003700 ORTHO05D004160 1.1e-07 60.5 116 37.9
Eucgr.B00508 Eucalyptus grandis HOM05D003700 ORTHO05D004160 1.5e-07 60.1 53 52.8
Hund02648 Selenicereus undatus HOM05D003700 ORTHO05D004160 1.5e-07 60.1 37 67.6
Sc04g0002660 Simmondsia chinensis HOM05D003700 ORTHO05D004160 1.5e-07 60.1 40 60.0
THA.LOC104821421 Tarenaya hassleriana HOM05D003700 ORTHO05D004160 1.5e-07 60.1 53 52.8
MSTRG.9629 Avicennia marina HOM05D003700 ORTHO05D004160 1.9e-07 59.7 42 61.9
Prupe.5G193800 Prunus persica HOM05D003700 ORTHO05D004160 1.9e-07 59.7 124 35.5
Sabra05G0035300 Salix brachista HOM05D003700 ORTHO05D004160 1.9e-07 59.7 56 55.4
Glyma.17G100300 Glycine max HOM05D003700 ORTHO05D004160 2.5e-07 59.3 53 54.7
QL10p017042 Quercus lobata HOM05D003700 ORTHO05D004160 2.5e-07 59.3 36 69.4
Dinv38714 Davidia involucrata HOM05D003700 ORTHO05D004160 3.2e-07 58.9 122 33.6
Gohir.D11G035000 Gossypium hirsutum HOM05D003700 ORTHO05D004160 3.2e-07 58.9 116 38.8
Os03g0187000 Oryza sativa ssp. japonica HOM05D003700 ORTHO05D004160 3.2e-07 58.9 37 70.3
Zm00001eb401550 Zea mays HOM05D003700 ORTHO05D004160 3.2e-07 58.9 32 75.0
Potri.013G022500 Populus trichocarpa HOM05D003700 ORTHO05D004160 4.2e-07 58.5 37 64.9
Sp2g25630 Schrenkiella parvula HOM05D003700 ORTHO05D004160 4.2e-07 58.5 39 61.5
CANSAT56G3341 Cannabis sativa HOM05D003700 ORTHO05D004160 5.5e-07 58.2 117 34.2
BolC3t18700H Brassica oleracea HOM05D003700 ORTHO05D004160 7.2e-07 57.8 73 42.5
Lj4g0000044 Lotus japonicus HOM05D003700 ORTHO05D004160 9.4e-07 57.4 60 50.0
vmacro11460 Vaccinium macrocarpon HOM05D003700 ORTHO05D004160 9.4e-07 57.4 57 52.6
ATR1127G116 Amborella trichopoda HOM05D003700 ORTHO05D004160 1.2e-06 57.0 47 53.2
arahy.Tifrunner.gnm1.ann1.DV8NSN Arachis hypogaea HOM05D003700 ORTHO05D004160 1.2e-06 57.0 36 63.9
arahy.Tifrunner.gnm1.ann1.H69J8I Arachis hypogaea HOM05D003700 ORTHO05D004160 1.2e-06 57.0 36 69.4
BcaC01g02471 Brassica carinata HOM05D003700 ORTHO05D004160 1.2e-06 57.0 73 42.5
C03p64440 Brassica napus HOM05D003700 ORTHO05D004160 1.2e-06 57.0 73 42.5
Lj5A110T129 Lonicera japonica HOM05D003700 ORTHO05D004160 1.2e-06 57.0 42 59.5
TWI81G0244 Tripterygium wilfordii HOM05D003700 ORTHO05D004160 1.2e-06 57.0 107 39.3
BcaB07g29837 Brassica carinata HOM05D003700 ORTHO05D004160 1.6e-06 56.6 36 63.9
BcaC03g18149 Brassica carinata HOM05D003700 ORTHO05D004160 1.6e-06 56.6 36 63.9
C02p62180 Brassica napus HOM05D003700 ORTHO05D004160 1.6e-06 56.6 36 63.9
Phvul.003G190000 Phaseolus vulgaris HOM05D003700 ORTHO05D004160 1.6e-06 56.6 51 56.9
AT5G62440 Arabidopsis thaliana HOM05D003700 ORTHO05D004160 2.1e-06 56.2 97 39.2
arahy.Tifrunner.gnm1.ann1.G7C7PJ Arachis hypogaea HOM05D003700 ORTHO05D004160 2.1e-06 56.2 36 66.7
BolC2t12276H Brassica oleracea HOM05D003700 ORTHO05D004160 2.1e-06 56.2 87 37.9
CAN.G628.1 Capsicum annuum HOM05D003700 ORTHO05D004160 2.1e-06 56.2 53 52.8
MD14G1200600 Malus domestica HOM05D003700 ORTHO05D004160 2.1e-06 56.2 102 36.3
Atru.chr11.2689 Acer truncatum HOM05D003700 ORTHO05D004160 2.7e-06 55.8 97 35.1
Carub.0008s2312 Capsella rubella HOM05D003700 ORTHO05D004160 2.7e-06 55.8 98 37.8
Lsat_1_v5_gn_1_13920 Lactuca sativa HOM05D003700 ORTHO05D004160 2.7e-06 55.8 102 37.3
A02p42310 Brassica napus HOM05D003700 ORTHO05D004160 3.6e-06 55.5 89 39.3
BraA02t09160Z Brassica rapa HOM05D003700 ORTHO05D004160 3.6e-06 55.5 89 39.3
Hma1.2p1_1936F.1_g308170 Hydrangea macrophylla HOM05D003700 ORTHO05D004160 3.6e-06 55.5 123 35.0
Hma1.2p1_1936F.1_g308180 Hydrangea macrophylla HOM05D003700 ORTHO05D004160 3.6e-06 55.5 123 35.0
Hma1.2p1_2516F.1_g323665 Hydrangea macrophylla HOM05D003700 ORTHO05D004160 3.6e-06 55.5 123 35.0
PSO013G0046 Papaver somniferum HOM05D003700 ORTHO05D004160 3.6e-06 55.5 43 55.8
Aa31LG11G1190 Aethionema arabicum HOM05D003700 ORTHO05D004160 4.7e-06 55.1 36 63.9
Oeu047295.1 Olea europaea HOM05D003700 ORTHO05D004160 4.7e-06 55.1 38 60.5
PSO832G2691 Papaver somniferum HOM05D003700 ORTHO05D004160 4.7e-06 55.1 88 36.4
Sc12g0006380 Simmondsia chinensis HOM05D003700 ORTHO05D004160 4.7e-06 55.1 57 47.4
Actinidia04888 Actinidia chinensis HOM05D003700 ORTHO05D004160 6.1e-06 54.7 115 35.7
A06p29150 Brassica napus HOM05D003700 ORTHO05D004160 6.1e-06 54.7 80 40.0
AUR62008420 Chenopodium quinoa HOM05D003700 ORTHO05D004160 6.1e-06 54.7 102 38.2
Ca_13772_v3 Cicer arietinum L. HOM05D003700 ORTHO05D004160 6.1e-06 54.7 36 63.9
Sed0020544 Sechium edule HOM05D003700 ORTHO05D004160 6.1e-06 54.7 110 33.6
SEGI_41222 Sequoiadendron giganteum HOM05D003700 ORTHO05D004160 6.1e-06 54.7 35 60.0
TAR371G1074 Trochodendron aralioides HOM05D003700 ORTHO05D004160 6.1e-06 54.7 94 36.2
Cc04_g16600 Coffea canephora HOM05D003700 ORTHO05D004160 8.0e-06 54.3 91 38.5
HanXRQChr02g0043591 Helianthus annuus HOM05D003700 ORTHO05D004160 8.0e-06 54.3 104 34.6
HanXRQChr04g0107321 Helianthus annuus HOM05D003700 ORTHO05D004160 8.0e-06 54.3 99 36.4
Sabra13G0024600 Salix brachista HOM05D003700 ORTHO05D004160 8.0e-06 54.3 36 63.9
VMungo1215G2263 Vigna mungo HOM05D003700 ORTHO05D004160 8.0e-06 54.3 51 54.9


User provided reference genes

Program Settings