Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 3.4e-140 501.9 297 100.0
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 2.9e-115 419.1 352 75.9
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 8.4e-107 391.0 353 67.4
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.8e-102 375.9 352 65.3
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 8.1e-102 374.4 349 65.6
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 4.0e-93 345.5 352 64.5
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 2.9e-91 339.3 352 63.1
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 2.9e-91 339.3 352 63.1
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 2.5e-74 283.1 351 53.8
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.2e-73 280.8 352 52.6
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 1.3e-72 277.3 349 54.2
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.3e-72 276.6 350 52.3
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 3.0e-72 276.2 356 51.4
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 5.1e-72 275.4 353 50.7
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 3.3e-71 272.7 354 50.6
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 3.1e-69 266.2 352 48.9
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 6.9e-69 265.0 350 51.1
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 3.4e-68 262.7 350 50.0
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 4.5e-68 262.3 354 49.2
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 4.5e-68 262.3 354 49.2
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 5.9e-68 261.9 352 48.3
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 8.5e-67 258.1 326 55.2
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 7.2e-66 255.0 358 53.6
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 8.8e-64 248.1 350 54.6
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 2.5e-63 246.5 354 48.0
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 3.3e-63 246.1 353 47.9
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 2.8e-62 243.0 339 49.0
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 4.8e-62 242.3 349 49.3
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 1.1e-61 241.1 333 50.5
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 5.3e-61 238.8 350 46.3
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 2.6e-60 236.5 352 46.9
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 5.9e-60 235.3 356 46.1
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 7.7e-60 235.0 338 48.8
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 7.7e-60 235.0 338 48.8
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 3.8e-59 232.6 352 46.3
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 8.5e-59 231.5 360 46.4
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 8.5e-59 231.5 354 46.6
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 8.5e-59 231.5 357 47.3
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 1.1e-58 231.1 352 45.7
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.4e-58 230.7 357 49.6
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 1.4e-58 230.7 361 45.4
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 1.6e-57 227.3 352 45.7
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.6e-57 227.3 358 44.4
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 2.1e-57 226.9 339 50.4
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 4.7e-57 225.7 357 47.1
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.7e-57 225.7 357 47.1
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 6.1e-57 225.3 350 46.9
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 6.1e-57 225.3 343 46.1
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 7.9e-57 224.9 353 46.2
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 7.9e-57 224.9 353 46.2
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.4e-56 224.2 344 48.5
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 1.8e-56 223.8 337 46.9
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 5.1e-56 222.2 348 44.0
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 5.1e-56 222.2 338 47.3
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 6.7e-56 221.9 353 44.8
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 1.1e-55 221.1 355 45.9
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 1.5e-55 220.7 349 44.7
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 2.0e-55 220.3 366 43.7
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 2.0e-55 220.3 368 42.9
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 5.7e-55 218.8 362 44.8
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 5.7e-55 218.8 362 44.8
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 7.4e-55 218.4 358 44.7
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 8.2e-54 214.9 350 43.1
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.1e-53 214.5 348 43.1
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.8e-53 213.8 351 42.5
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.5e-52 210.7 391 41.2
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 5.9e-52 208.8 345 44.3
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 7.7e-52 208.4 351 45.3
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 5.0e-51 205.7 345 43.8
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 1.4e-50 204.1 354 42.4
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 1.4e-50 204.1 354 42.4
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 1.6e-49 200.7 338 46.4
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 2.7e-49 199.9 354 42.7
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 6.1e-49 198.7 339 44.0
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 8.0e-49 198.4 350 43.7
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 1.0e-48 198.0 339 44.0
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 1.4e-48 197.6 337 46.3
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 8.8e-48 194.9 336 42.9
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 3.7e-46 189.5 357 41.2
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 1.1e-45 188.0 349 43.8
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 3.5e-44 183.0 363 41.9
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 4.5e-44 182.6 352 40.1
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.0e-43 181.4 383 38.9
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 1.7e-43 180.6 359 41.2
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.2e-43 180.3 359 42.3
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 3.8e-43 179.5 345 41.7
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 3.8e-43 179.5 356 39.0
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 6.5e-43 178.7 369 40.4
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 7.2e-42 175.3 347 45.0
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 9.4e-42 174.9 348 40.8
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 4.7e-41 172.6 342 42.4
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 8.0e-41 171.8 310 44.2
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.8e-40 170.6 215 54.9
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 1.8e-40 170.6 340 40.9
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 3.0e-40 169.9 341 40.8
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 4.0e-40 169.5 340 39.4
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 2.0e-39 167.2 257 46.7
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.0e-39 167.2 340 38.8
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 4.8e-38 162.5 339 41.0
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 3.1e-37 159.8 333 40.5
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.2e-36 157.9 339 39.2
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 1.6e-36 157.5 371 37.7
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 3.5e-36 156.4 342 38.9
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 1.7e-35 154.1 340 41.2
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 9.4e-34 148.3 344 36.3
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.2e-33 147.9 260 49.6
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 2.1e-33 147.1 351 41.3
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 2.7e-33 146.7 347 43.5
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 4.7e-33 146.0 335 40.9
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 1.8e-32 144.1 341 39.3
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 1.8e-32 144.1 341 39.3
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 2.3e-32 143.7 347 43.8
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 5.2e-32 142.5 331 42.9
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 1.7e-30 137.5 305 38.0
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 8.3e-30 135.2 351 39.9
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 2.7e-28 130.2 146 59.6
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 1.6e-25 120.9 354 33.1
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 3.6e-25 119.8 340 35.3
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 8.0e-25 118.6 347 34.3
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 3.0e-24 116.7 362 34.5
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.5e-23 114.4 367 32.7
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 2.8e-22 110.2 162 53.1
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 3.2e-21 106.7 171 43.3
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 5.9e-20 102.4 293 37.5
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 2.3e-19 100.5 295 33.6
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 3.3e-18 96.7 283 34.3
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 4.3e-18 96.3 341 32.8
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 5.6e-18 95.9 149 43.6
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 9.5e-18 95.1 354 34.2
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 2.9e-14 83.6 312 32.7
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 6.0e-12 75.9 331 28.4
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 6.6e-11 72.4 81 58.0
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 2.5e-10 70.5 60 56.7
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 4.3e-10 69.7 322 29.8
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 1.2e-09 68.2 321 25.2
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 8.0e-09 65.5 304 31.9
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 4.0e-08 63.2 144 37.5
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 2.0e-07 60.8 131 35.1
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 5.8e-07 59.3 240 32.5
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 2.9e-06 57.0 66 48.5


User provided reference genes

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