Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 0.0e+00 1269.6 703 100.0
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 1.2e-209 733.8 730 63.7
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 8.4e-190 667.9 724 58.0
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 2.7e-188 662.9 724 58.1
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 5.3e-168 595.5 726 53.4
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 7.4e-154 548.5 814 47.1
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 7.8e-95 352.4 784 36.5
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 2.3e-86 324.3 640 39.4
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 3.4e-82 310.5 782 36.3
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 9.9e-82 308.9 799 33.9
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 4.3e-77 293.5 823 33.8
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.4e-75 288.5 778 35.3
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 6.4e-73 279.6 617 38.7
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 3.5e-71 273.9 762 33.3
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 6.0e-71 273.1 760 34.6
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 7.9e-71 272.7 746 34.7
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 2.5e-69 267.7 792 31.8
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 2.5e-69 267.7 792 32.8
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 3.1e-67 260.8 724 33.3
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 2.4e-64 251.1 791 30.7
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 3.2e-64 250.8 791 33.2
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 6.0e-63 246.5 750 32.3
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 1.3e-62 245.4 674 34.3
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 2.1e-60 238.0 780 31.5
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 6.9e-59 233.0 657 32.1
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 2.0e-58 231.5 751 33.4
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 2.6e-58 231.1 781 31.2
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 4.5e-58 230.3 798 31.8
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 6.5e-57 226.5 668 31.9
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 1.4e-56 225.3 802 30.5
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 1.5e-53 215.3 837 30.0
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 9.6e-53 212.6 694 31.0
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 2.8e-52 211.1 797 29.7
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 5.9e-50 203.4 644 31.5
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 2.9e-49 201.1 671 30.7
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 6.5e-49 199.9 783 30.9
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 1.9e-48 198.4 577 31.9
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 4.6e-47 193.7 417 38.8
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 6.7e-46 189.9 708 31.1
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 2.2e-44 184.9 762 28.7
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 2.8e-44 184.5 760 30.1
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 6.3e-44 183.3 739 30.7
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 1.4e-43 182.2 756 30.2
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 2.4e-43 181.4 727 30.7
Thecc.07G171300 Theobroma cacao HOM05D003739 ORTHO05D045175 5.3e-43 180.3 172 61.6
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 6.9e-43 179.9 787 29.5
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 3.4e-42 177.6 661 30.3
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.0e-41 176.0 793 29.5
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.7e-41 175.3 761 29.2
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 1.7e-41 175.3 702 30.1
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.2e-41 174.9 747 30.1
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 8.5e-41 172.9 788 28.8
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 4.2e-40 170.6 748 29.1
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.1e-39 168.3 533 32.6
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 4.6e-39 167.2 672 30.5
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 1.4e-38 165.6 759 28.1
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 2.3e-38 164.9 490 33.5
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 2.3e-38 164.9 586 30.7
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 8.8e-38 162.9 821 28.1
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 8.8e-38 162.9 744 29.0
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 1.1e-37 162.5 669 31.2
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 1.3e-36 159.1 754 28.0
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.7e-36 158.7 753 30.3
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 3.7e-36 157.5 245 41.6
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.1e-35 156.0 665 31.3
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 2.0e-34 151.8 354 36.2
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 3.4e-34 151.0 419 33.9
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 1.3e-33 149.1 521 30.1
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 6.5e-33 146.7 530 30.0
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 8.5e-33 146.4 297 37.7
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 4.2e-32 144.1 541 31.2
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 4.2e-32 144.1 492 30.5
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.2e-31 142.5 393 32.3
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 2.6e-29 134.8 692 28.2
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 4.4e-29 134.0 790 24.9
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.3e-28 132.5 252 43.7
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 2.2e-28 131.7 562 27.4
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.2e-28 131.7 598 27.8
Thecc.07G171200 Theobroma cacao HOM05D003739 ORTHO05D003996 2.4e-27 128.3 121 63.6
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 3.1e-27 127.9 243 37.9
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 4.1e-27 127.5 741 27.9
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 5.3e-27 127.1 608 28.0
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 9.1e-27 126.3 624 26.6
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 1.2e-26 125.9 717 26.8
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 1.2e-26 125.9 199 42.7
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.2e-26 125.9 557 27.8
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 1.2e-26 125.9 175 45.7
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 5.9e-26 123.6 173 45.7
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 5.9e-26 123.6 702 28.1
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 5.9e-26 123.6 367 34.3
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 7.7e-26 123.2 792 27.1
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 1.7e-25 122.1 172 41.9
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 1.7e-25 122.1 172 41.9
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 1.7e-25 122.1 512 29.3
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 2.2e-25 121.7 727 26.3
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 2.9e-25 121.3 310 32.9
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 1.1e-24 119.4 335 30.7
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.9e-24 118.6 168 42.3
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 2.5e-24 118.2 168 42.3
Duzib213G0243 Durio zibethinus HOM05D003739 ORTHO05D045175 2.5e-24 118.2 100 62.0
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 4.2e-24 117.5 360 34.7
Atru.chr5.3066 Acer truncatum HOM05D003739 ORTHO05D003996 5.5e-24 117.1 315 34.0
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 1.2e-23 115.9 490 31.4
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.6e-23 114.4 166 41.6
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 4.7e-23 114.0 168 39.3
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 4.7e-23 114.0 647 25.2
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 6.1e-23 113.6 352 35.8
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 1.0e-22 112.8 259 38.6
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 1.4e-22 112.5 309 33.7
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 1.4e-22 112.5 309 33.7
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 4.0e-22 110.9 306 31.7
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.0e-22 110.9 555 28.3
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 4.0e-22 110.9 217 36.9
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 4.4e-21 107.5 431 33.4
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 4.4e-21 107.5 295 31.2
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.3e-20 105.9 748 25.5
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 1.3e-20 105.9 668 27.7
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 1.3e-20 105.9 123 47.2
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 1.7e-20 105.5 304 29.6
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.7e-20 105.5 730 27.3
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 2.8e-20 104.8 179 35.2
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 1.4e-19 102.4 206 39.3
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 4.1e-19 100.9 274 32.1
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.3e-19 100.5 559 27.0
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 7.0e-19 100.1 607 25.9
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 7.0e-19 100.1 612 25.0
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 9.1e-19 99.8 119 47.9
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 2.0e-18 98.6 163 36.8
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 3.5e-18 97.8 443 27.5
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 4.5e-18 97.4 349 32.4
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 5.0e-17 94.0 261 31.8
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 5.0e-17 94.0 287 29.3
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.5e-16 92.4 169 36.1
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 1.5e-16 92.4 299 32.1
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.5e-16 92.4 102 47.1
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 3.2e-16 91.3 132 37.1
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 4.2e-16 90.9 410 27.8
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 9.4e-16 89.7 289 30.1
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 1.2e-15 89.4 289 30.4
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.2e-15 89.4 62 64.5
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 2.7e-15 88.2 287 29.3
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 6.1e-15 87.0 186 32.8
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 2.3e-14 85.1 295 27.8
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 4.0e-14 84.3 76 48.7
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 4.0e-14 84.3 76 48.7
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 8.8e-14 83.2 100 44.0
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 2.6e-13 81.6 252 34.1
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 3.7e-12 77.8 98 42.9
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 8.3e-12 76.6 71 54.9
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.1e-11 76.3 83 49.4
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 2.0e-10 72.0 97 40.2
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 2.7e-10 71.6 120 34.2
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.9e-09 68.2 189 28.0
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 1.6e-07 62.4 528 22.2
HPP92_008918 Vanilla planifolia HOM05D003739 ORTHO05D003996 1.8e-06 58.9 113 36.3
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 4.0e-06 57.8 81 40.7
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 5.2e-06 57.4 426 23.7
Cfa024558 Carpinus fangiana HOM05D003739 ORTHO05D003996 6.8e-06 57.0 54 48.1
Hma1.2p1_0088F.1_g045220 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 6.8e-06 57.0 53 56.6


User provided reference genes

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