Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 6.6e-122 440.7 212 100.0
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.8e-47 193.4 89 100.0
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 8.5e-29 131.3 126 54.8
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 9.4e-28 127.9 228 38.6
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 1.8e-26 123.6 220 39.5
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.5e-25 120.6 168 41.1
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 3.4e-25 119.4 198 38.4
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 5.7e-25 118.6 150 44.0
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 9.8e-25 117.9 180 41.1
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 9.8e-25 117.9 150 44.0
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 1.3e-24 117.5 140 43.6
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 2.2e-24 116.7 152 42.1
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 2.8e-24 116.3 227 37.0
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 2.8e-24 116.3 150 43.3
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 3.7e-24 115.9 150 42.7
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 6.3e-24 115.2 198 37.4
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 8.3e-24 114.8 204 38.7
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 1.8e-23 113.6 127 49.6
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.8e-23 113.6 127 49.6
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.4e-23 113.2 134 47.8
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 7.0e-23 111.7 191 37.7
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 7.0e-23 111.7 230 39.1
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 2.0e-22 110.2 129 47.3
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 2.7e-22 109.8 212 38.7
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.7e-22 109.8 134 44.8
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 3.5e-22 109.4 134 44.8
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.5e-22 109.4 134 44.8
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 4.5e-22 109.0 129 45.7
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 5.9e-22 108.6 232 38.4
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 7.7e-22 108.2 136 44.9
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.3e-21 107.5 191 37.2
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 1.7e-21 107.1 161 41.6
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 2.2e-21 106.7 134 46.3
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 2.9e-21 106.3 134 41.0
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 5.0e-21 105.5 114 45.6
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 6.5e-21 105.1 134 43.3
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 1.9e-20 103.6 230 34.3
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 2.5e-20 103.2 202 35.1
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.2e-20 102.8 134 41.8
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.2e-20 102.8 134 41.0
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 4.2e-20 102.4 130 43.1
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 4.2e-20 102.4 134 39.6
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 7.2e-20 101.7 201 34.3
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 1.6e-19 100.5 132 46.2
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 2.1e-19 100.1 132 46.2
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 2.1e-19 100.1 132 46.2
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 2.1e-19 100.1 137 40.9
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.7e-19 99.8 124 41.1
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 3.6e-19 99.4 129 45.0
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 4.7e-19 99.0 128 39.8
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 6.1e-19 98.6 201 34.8
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 8.0e-19 98.2 109 45.0
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 1.0e-18 97.8 119 44.5
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 1.8e-18 97.1 138 40.6
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 3.0e-18 96.3 129 41.1
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 3.0e-18 96.3 198 34.3
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 3.0e-18 96.3 114 43.0
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 4.0e-18 95.9 124 41.1
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 4.0e-18 95.9 134 41.8
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 4.0e-18 95.9 166 35.5
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 5.2e-18 95.5 202 35.6
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 6.8e-18 95.1 198 34.3
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 6.8e-18 95.1 110 42.7
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 8.8e-18 94.7 148 37.8
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.2e-17 94.4 178 34.8
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 2.0e-17 93.6 129 40.3
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 4.4e-17 92.4 182 37.9
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 4.4e-17 92.4 111 39.6
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 5.7e-17 92.0 195 32.8
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 5.7e-17 92.0 202 34.7
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 5.7e-17 92.0 114 41.2
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 7.5e-17 91.7 132 41.7
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 9.8e-17 91.3 116 42.2
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 9.8e-17 91.3 138 41.3
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 9.8e-17 91.3 163 35.6
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 1.3e-16 90.9 108 43.5
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 1.7e-16 90.5 130 41.5
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.7e-16 90.5 138 41.3
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 2.2e-16 90.1 134 40.3
Aqoxy1G01498 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 6.3e-16 88.6 143 36.4
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 1.1e-15 87.8 144 36.8
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 1.1e-15 87.8 144 36.8
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 1.8e-15 87.0 181 35.4
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 1.8e-15 87.0 113 44.2
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 2.4e-15 86.7 177 36.2
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 4.1e-15 85.9 195 32.3
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 4.1e-15 85.9 104 43.3
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 4.1e-15 85.9 108 40.7
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 5.4e-15 85.5 131 40.5
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 9.2e-15 84.7 111 39.6
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.2e-14 84.3 116 42.2
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 1.6e-14 84.0 142 38.7
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 1.6e-14 84.0 108 40.7
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 2.0e-14 83.6 113 43.4
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 3.5e-14 82.8 195 33.8
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 7.7e-14 81.6 117 41.9
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 1.0e-13 81.3 109 43.1
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 1.0e-13 81.3 141 35.5
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 1.7e-13 80.5 113 41.6
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 1.7e-13 80.5 227 31.3
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 2.3e-13 80.1 109 42.2
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 6.6e-13 78.6 130 35.4
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 8.6e-13 78.2 195 32.8
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 8.6e-13 78.2 130 35.4
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 8.6e-13 78.2 130 35.4
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 8.6e-13 78.2 120 34.2
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 8.6e-13 78.2 125 35.2
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 8.6e-13 78.2 131 43.5
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.5e-12 77.4 146 35.6
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 1.5e-12 77.4 122 36.1
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 1.5e-12 77.4 122 36.1
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.5e-12 77.4 117 39.3
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 1.5e-12 77.4 97 44.3
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 1.9e-12 77.0 122 36.1
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.9e-12 77.0 117 39.3
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 2.5e-12 76.6 127 37.8
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 4.3e-12 75.9 104 38.5
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.2e-11 74.3 97 43.3
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 1.6e-11 73.9 122 35.2
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 2.1e-11 73.6 138 35.5
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 2.8e-11 73.2 102 43.1
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 6.1e-11 72.0 101 36.6
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 6.1e-11 72.0 106 35.8
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 1.4e-10 70.9 108 46.3
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.8e-10 70.5 109 37.6
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 3.0e-10 69.7 101 44.6
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 5.2e-10 68.9 112 35.7
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 5.2e-10 68.9 175 30.3
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 5.2e-10 68.9 159 33.3
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.8e-10 68.6 106 40.6
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 6.8e-10 68.6 138 34.8
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 6.8e-10 68.6 138 34.8
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 6.8e-10 68.6 138 34.8
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 6.8e-10 68.6 138 34.8
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.9e-10 68.2 106 38.7
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 2.6e-09 66.6 139 35.3
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.4e-09 65.9 109 37.6
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 5.7e-09 65.5 173 31.2
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.8e-09 64.7 106 37.7
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.8e-09 64.7 106 35.8
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 9.8e-09 64.7 120 39.2
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 1.3e-08 64.3 173 32.9
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 2.9e-08 63.2 81 43.2
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 4.9e-08 62.4 105 35.2
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.3e-08 61.6 109 36.7
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.1e-07 61.2 106 36.8
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 1.1e-07 61.2 110 37.3
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.4e-07 60.1 106 36.8
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.2e-07 59.7 64 46.9
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.1e-07 59.3 100 38.0
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 7.0e-07 58.5 108 36.1
ATR0730G071 Amborella trichopoda HOM05D020218 ORTHO05D017274 2.0e-06 57.0 112 33.0
Dinv26718 Davidia involucrata HOM05D002733 ORTHO05D003856 2.0e-06 57.0 89 44.9
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.5e-06 56.2 108 35.2
Prupe.7G162100 Prunus persica HOM05D002733 ORTHO05D003856 4.6e-06 55.8 85 35.3


User provided reference genes

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