Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31928 Corchorus olitorius HOM05D001797 ORTHO05D001650 2.9e-95 352.4 261 100.0
Thecc.06G239500 Theobroma cacao HOM05D001797 ORTHO05D001650 3.2e-33 146.4 210 74.8
Gohir.D06G162900 Gossypium hirsutum HOM05D001797 ORTHO05D001650 2.0e-32 143.7 91 69.2
Gorai.010G190100 Gossypium raimondii HOM05D001797 ORTHO05D001650 1.5e-30 137.5 91 68.1
Gohir.A06G156500 Gossypium hirsutum HOM05D001797 ORTHO05D001650 6.8e-28 128.6 75 73.3
Duzib192G0736 Durio zibethinus HOM05D001797 ORTHO05D001650 1.2e-27 127.9 206 59.7
Duzib235G0111 Durio zibethinus HOM05D001797 ORTHO05D001650 4.4e-27 125.9 216 71.3
Duzib192G0521 Durio zibethinus HOM05D001797 ORTHO05D001650 1.1e-25 121.3 75 70.7
Cpa.g.sc27.240 Carica papaya HOM05D001797 ORTHO05D001650 6.6e-23 112.1 274 58.4
Gorai.009G184500 Gossypium raimondii HOM05D001797 ORTHO05D001650 2.5e-22 110.2 67 67.2
Gohir.A10G008100 Gossypium hirsutum HOM05D001797 ORTHO05D001650 5.6e-22 109.0 208 46.2
Gohir.D05G179000 Gossypium hirsutum HOM05D001797 ORTHO05D001650 1.2e-21 107.8 67 65.7
Gohir.A10G008000 Gossypium hirsutum HOM05D001797 ORTHO05D001650 1.4e-20 104.4 211 64.0
Gohir.D10G007900 Gossypium hirsutum HOM05D001797 ORTHO05D001650 2.3e-20 103.6 78 66.7
Duzib192G0859 Durio zibethinus HOM05D001797 ORTHO05D001650 5.2e-20 102.4 84 57.1
Haze_07008 Corylus avellana HOM05D001797 ORTHO05D001650 1.2e-19 101.3 78 60.3
Gorai.011G008600 Gossypium raimondii HOM05D001797 ORTHO05D001650 4.9e-18 95.9 80 61.2
Prupe.4G004900 Prunus persica HOM05D001797 ORTHO05D001650 4.1e-17 92.8 79 58.2
QL05p068090 Quercus lobata HOM05D001797 ORTHO05D001650 4.1e-17 92.8 71 62.0
QL05p068118 Quercus lobata HOM05D001797 ORTHO05D001650 4.6e-16 89.4 71 59.2
Ciclev10017543m.g Citrus clementina HOM05D001797 ORTHO05D001650 1.0e-15 88.2 80 52.5
Gohir.A05G175900 Gossypium hirsutum HOM05D001797 ORTHO05D001650 1.3e-15 87.8 70 61.4
AL7G38650 Arabidopsis lyrata HOM05D001797 ORTHO05D001650 1.7e-15 87.4 215 55.3
CARHR222750 Cardamine hirsuta HOM05D001797 ORTHO05D001650 2.3e-15 87.0 70 61.4
Haze_07009 Corylus avellana HOM05D001797 ORTHO05D001650 3.9e-15 86.3 80 52.5
CANSAT56G0532 Cannabis sativa HOM05D001797 ORTHO05D001650 8.6e-15 85.1 89 51.7
C07p47830 Brassica napus HOM05D001797 ORTHO05D001650 2.5e-14 83.6 73 60.3
Manes.09G077799 Manihot esculenta HOM05D001797 ORTHO05D001650 4.3e-14 82.8 92 45.7
Atru.chr1.2286 Acer truncatum HOM05D001797 ORTHO05D001650 5.6e-14 82.4 70 61.4
VMungo1215G2802 Vigna mungo HOM05D001797 ORTHO05D001650 5.6e-14 82.4 74 56.8
A08p12240 Brassica napus HOM05D001797 ORTHO05D001650 7.3e-14 82.0 211 64.9
BraA08t33234Z Brassica rapa HOM05D001797 ORTHO05D001650 7.3e-14 82.0 211 64.9
Duzib192G0829 Durio zibethinus HOM05D001797 ORTHO05D001650 9.5e-14 81.6 107 41.1
RcHm_v2.0_Chr5g0000621 Rosa chinensis HOM05D001797 ORTHO05D001650 9.5e-14 81.6 211 59.2
RcHm_v2.0_Chr1g0347351 Rosa chinensis HOM05D001797 ORTHO05D001650 1.2e-13 81.3 211 35.5
AT4G16380 Arabidopsis thaliana HOM05D001797 ORTHO05D001650 1.6e-13 80.9 88 55.7
Gohir.A05G176000 Gossypium hirsutum HOM05D001797 ORTHO05D001650 2.1e-13 80.5 47 68.1
Sed0007136 Sechium edule HOM05D001797 ORTHO05D001650 2.8e-13 80.1 88 45.5
THA.LOC104815475 Tarenaya hassleriana HOM05D001797 ORTHO05D001650 2.8e-13 80.1 68 55.9
FAN21G3005 Fragaria x ananassa HOM05D001797 ORTHO05D001650 4.7e-13 79.3 76 55.3
BcaNung00203 Brassica carinata HOM05D001797 ORTHO05D001650 6.2e-13 79.0 72 58.3
C01p26550 Brassica napus HOM05D001797 ORTHO05D001650 8.1e-13 78.6 73 57.5
C01p26560 Brassica napus HOM05D001797 ORTHO05D001650 8.1e-13 78.6 73 57.5
BcaC09g50331 Brassica carinata HOM05D001797 ORTHO05D001650 1.4e-12 77.8 73 57.5
BcaC09g50333 Brassica carinata HOM05D001797 ORTHO05D001650 1.4e-12 77.8 73 57.5
BolC1t02597H Brassica oleracea HOM05D001797 ORTHO05D001650 1.4e-12 77.8 73 57.5
FvH4_3g00443 Fragaria vesca HOM05D001797 ORTHO05D001650 1.4e-12 77.8 76 53.9
FvH4_3g00430 Fragaria vesca HOM05D001797 ORTHO05D001650 1.8e-12 77.4 75 54.7
Prupe.4G005100 Prunus persica HOM05D001797 ORTHO05D001650 1.8e-12 77.4 84 52.4
Sabra16G0011400 Salix brachista HOM05D001797 ORTHO05D001650 1.8e-12 77.4 65 53.8
Gohir.D05G179050 Gossypium hirsutum HOM05D001797 ORTHO05D001650 4.0e-12 76.3 50 62.0
Gorai.009G184600 Gossypium raimondii HOM05D001797 ORTHO05D001650 4.0e-12 76.3 50 62.0
Lsat_1_v5_gn_7_13200 Lactuca sativa HOM05D001797 ORTHO05D001650 4.0e-12 76.3 82 51.2
HanXRQChr05g0129061 Helianthus annuus HOM05D001797 ORTHO05D001650 6.8e-12 75.5 78 46.2
A03p49770 Brassica napus HOM05D001797 ORTHO05D001650 1.2e-11 74.7 258 57.4
CSS0024411 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 1.5e-11 74.3 77 45.5
CSS0039099 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 2.6e-11 73.6 78 48.7
Cfa000045 Carpinus fangiana HOM05D001797 ORTHO05D001650 2.6e-11 73.6 93 40.9
Ciclev10016401m.g Citrus clementina HOM05D001797 ORTHO05D001650 2.6e-11 73.6 74 51.4
Manes.09G077766 Manihot esculenta HOM05D001797 ORTHO05D001650 2.6e-11 73.6 84 44.0
Potri.016G006700 Populus trichocarpa HOM05D001797 ORTHO05D001650 3.4e-11 73.2 71 52.1
CSS0035696 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 5.8e-11 72.4 81 46.9
BolC8t48363H Brassica oleracea HOM05D001797 ORTHO05D001650 7.6e-11 72.0 211 61.6
CAN.G1156.11 Capsicum annuum HOM05D001797 ORTHO05D001650 7.6e-11 72.0 76 55.3
Gohir.D05G178900 Gossypium hirsutum HOM05D001797 ORTHO05D001650 7.6e-11 72.0 70 54.3
Gorai.009G184400 Gossypium raimondii HOM05D001797 ORTHO05D001650 7.6e-11 72.0 80 48.8
FvH4_3g00445 Fragaria vesca HOM05D001797 ORTHO05D001650 9.9e-11 71.6 208 51.4
RcHm_v2.0_Chr1g0347291 Rosa chinensis HOM05D001797 ORTHO05D001650 1.3e-10 71.2 211 38.9
FAN08G1118 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.7e-10 70.9 212 51.9
FAN13G2605 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.7e-10 70.9 212 51.9
FAN14G5464 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.7e-10 70.9 212 51.9
MSTRG.16049 Avicennia marina HOM05D001797 ORTHO05D001650 2.2e-10 70.5 83 49.4
FAN02G3978 Fragaria x ananassa HOM05D001797 ORTHO05D001650 2.2e-10 70.5 211 51.7
FAN03G0520 Fragaria x ananassa HOM05D001797 ORTHO05D001650 2.2e-10 70.5 211 51.7
FAN05G0358 Fragaria x ananassa HOM05D001797 ORTHO05D001650 2.2e-10 70.5 211 51.7
FAN05G0669 Fragaria x ananassa HOM05D001797 ORTHO05D001650 2.2e-10 70.5 211 51.7
FAN05G4551 Fragaria x ananassa HOM05D001797 ORTHO05D001650 2.2e-10 70.5 211 51.7
FAN06G3990 Fragaria x ananassa HOM05D001797 ORTHO05D001650 2.2e-10 70.5 211 51.7
FAN08G2964 Fragaria x ananassa HOM05D001797 ORTHO05D001650 2.2e-10 70.5 211 51.7
FAN15G3701 Fragaria x ananassa HOM05D001797 ORTHO05D001650 2.2e-10 70.5 211 51.7
FAN16G3637 Fragaria x ananassa HOM05D001797 ORTHO05D001650 2.2e-10 70.5 211 51.7
FAN24G0943 Fragaria x ananassa HOM05D001797 ORTHO05D001650 2.2e-10 70.5 211 51.7
FAN26G1410 Fragaria x ananassa HOM05D001797 ORTHO05D001650 2.2e-10 70.5 211 51.7
FAN27G0715 Fragaria x ananassa HOM05D001797 ORTHO05D001650 2.2e-10 70.5 211 51.7
FAN27G3366 Fragaria x ananassa HOM05D001797 ORTHO05D001650 2.2e-10 70.5 211 51.7
FAN28G0889 Fragaria x ananassa HOM05D001797 ORTHO05D001650 2.2e-10 70.5 211 51.7
Glyma.15G118400 Glycine max HOM05D001797 ORTHO05D001650 2.9e-10 70.1 210 55.7
MD10G1337900 Malus domestica HOM05D001797 ORTHO05D001650 2.9e-10 70.1 69 53.6
TWI38G1105 Tripterygium wilfordii HOM05D001797 ORTHO05D001650 3.8e-10 69.7 81 53.1
CAN.G449.28 Capsicum annuum HOM05D001797 ORTHO05D001650 6.4e-10 68.9 79 48.1
DCAR_030844 Daucus carota HOM05D001797 ORTHO05D001650 6.4e-10 68.9 106 46.2
TWI38G0564 Tripterygium wilfordii HOM05D001797 ORTHO05D001650 6.4e-10 68.9 194 56.2
Sabra16G0011500 Salix brachista HOM05D001797 ORTHO05D001650 1.1e-09 68.2 72 50.0
arahy.Tifrunner.gnm1.ann1.L21B75 Arachis hypogaea HOM05D001797 ORTHO05D001650 2.4e-09 67.0 211 61.1
CiPaw.09G108000 Carya illinoinensis HOM05D001797 ORTHO05D001650 2.4e-09 67.0 68 51.5
CSS0006117 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 3.2e-09 66.6 69 49.3
CSS0032208 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 3.2e-09 66.6 69 49.3
Atru.chr2.3724 Acer truncatum HOM05D001797 ORTHO05D001650 4.1e-09 66.2 72 51.4
SGA_v2.0_scaffold7G03707 Striga asiatica HOM05D001797 ORTHO05D001650 5.4e-09 65.9 74 48.6
Atru.chr2.3739 Acer truncatum HOM05D001797 ORTHO05D001650 9.2e-09 65.1 76 50.0
Potri.006G019300 Populus trichocarpa HOM05D001797 ORTHO05D001650 1.2e-08 64.7 73 47.9
BcaC09g50336 Brassica carinata HOM05D001797 ORTHO05D001650 1.6e-08 64.3 73 49.3
C01p26520 Brassica napus HOM05D001797 ORTHO05D001650 1.6e-08 64.3 73 49.3
BolC1t02596H Brassica oleracea HOM05D001797 ORTHO05D001650 1.6e-08 64.3 73 49.3
Thhalv10026065m.g Eutrema salsugineum HOM05D001797 ORTHO05D001650 1.6e-08 64.3 85 44.7
Glyma.09G013700 Glycine max HOM05D001797 ORTHO05D001650 1.6e-08 64.3 210 52.9
Thecc.06G239200 Theobroma cacao HOM05D001797 ORTHO05D001650 1.6e-08 64.3 36 75.0
arahy.Tifrunner.gnm1.ann1.34Y9P3 Arachis hypogaea HOM05D001797 ORTHO05D001650 2.1e-08 63.9 211 60.7
Nitab4.5_0002478g0050 Nicotiana tabacum HOM05D001797 ORTHO05D001650 2.1e-08 63.9 91 46.2
Migut.M01438 Erythranthe guttata HOM05D001797 ORTHO05D001650 2.7e-08 63.5 74 45.9
Rhsim13G0141800 Rhododendron simsii HOM05D001797 ORTHO05D001650 3.5e-08 63.2 79 51.9
CSS0000720 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 6.0e-08 62.4 68 47.1
Actinidia35737 Actinidia chinensis HOM05D001797 ORTHO05D001650 7.8e-08 62.0 67 47.8
Phvul.006G139900 Phaseolus vulgaris HOM05D001797 ORTHO05D001650 7.8e-08 62.0 214 53.7
A01p21240 Brassica napus HOM05D001797 ORTHO05D001650 1.0e-07 61.6 73 47.9
CSS0036445 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 1.0e-07 61.6 68 45.6
Eucgr.E03863 Eucalyptus grandis HOM05D001797 ORTHO05D001650 1.0e-07 61.6 65 50.8
Sabra06G0013500 Salix brachista HOM05D001797 ORTHO05D001650 1.0e-07 61.6 59 52.5
Aa31LG8G14970 Aethionema arabicum HOM05D001797 ORTHO05D001650 1.3e-07 61.2 224 55.8
AUR62021820 Chenopodium quinoa HOM05D001797 ORTHO05D001650 1.3e-07 61.2 79 45.6
ECA247G2176 Erigeron canadensis HOM05D001797 ORTHO05D001650 1.3e-07 61.2 84 40.5
MD10G1337700 Malus domestica HOM05D001797 ORTHO05D001650 1.7e-07 60.8 209 36.8
Nn1g03197 Nelumbo nucifera HOM05D001797 ORTHO05D001650 1.7e-07 60.8 72 47.2
Oeu002776.1 Olea europaea HOM05D001797 ORTHO05D001650 1.7e-07 60.8 85 45.9
QL05p068051 Quercus lobata HOM05D001797 ORTHO05D001650 2.3e-07 60.5 72 44.4
Aa31LG2G12440 Aethionema arabicum HOM05D001797 ORTHO05D001650 3.0e-07 60.1 71 47.9
Oeu000141.1 Olea europaea HOM05D001797 ORTHO05D001650 3.0e-07 60.1 82 45.1
PGR042G3950 Punica granatum HOM05D001797 ORTHO05D001650 3.0e-07 60.1 89 41.6
A01p21220 Brassica napus HOM05D001797 ORTHO05D001650 3.9e-07 59.7 73 46.6
CSS0044052 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 3.9e-07 59.7 88 42.0
PSO541G2121 Papaver somniferum HOM05D001797 ORTHO05D001650 3.9e-07 59.7 90 41.1
PSO675G8410 Papaver somniferum HOM05D001797 ORTHO05D001650 5.1e-07 59.3 108 34.3
Sabra06G0013600 Salix brachista HOM05D001797 ORTHO05D001650 6.6e-07 58.9 59 50.8
arahy.Tifrunner.gnm1.ann1.CMF379 Arachis hypogaea HOM05D001797 ORTHO05D001650 8.6e-07 58.5 71 47.9
arahy.Tifrunner.gnm1.ann1.Q4MEBS Arachis hypogaea HOM05D001797 ORTHO05D001650 8.6e-07 58.5 71 47.9
Psat4g002360 Pisum sativum HOM05D001797 ORTHO05D001650 8.6e-07 58.5 81 43.2
Cc09_g08340 Coffea canephora HOM05D001797 ORTHO05D001650 1.1e-06 58.2 70 45.7
Medtr2g026670 Medicago truncatula HOM05D001797 ORTHO05D001650 1.1e-06 58.2 222 49.5
Potri.006G019200 Populus trichocarpa HOM05D001797 ORTHO05D001650 1.5e-06 57.8 71 46.5
TWI63G0580 Tripterygium wilfordii HOM05D001797 ORTHO05D001650 1.5e-06 57.8 83 43.4
VMungo0540G0181 Vigna mungo HOM05D001797 ORTHO05D001650 2.5e-06 57.0 85 43.5
FvH4_3g00441 Fragaria vesca HOM05D001797 ORTHO05D001650 3.3e-06 56.6 54 57.4
Glyma.17G006300 Glycine max HOM05D001797 ORTHO05D001650 3.3e-06 56.6 82 42.7
RcHm_v2.0_Chr1g0328811 Rosa chinensis HOM05D001797 ORTHO05D001650 5.6e-06 55.8 262 30.5
Carub.0007s2515 Capsella rubella HOM05D001797 ORTHO05D001650 7.3e-06 55.5 86 43.0
Lalb_Chr15g0088181 Lupinus albus HOM05D001797 ORTHO05D001650 7.3e-06 55.5 221 43.4
QL05p068086 Quercus lobata HOM05D001797 ORTHO05D001650 9.6e-06 55.1 116 32.8
PGSC0003DMG400008441 Solanum tuberosum HOM05D001797 ORTHO05D001650 9.6e-06 55.1 101 37.6


User provided reference genes

Program Settings