Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31908 Corchorus olitorius HOM05D000553 ORTHO05D155196 1.7e-48 195.7 96 100.0
Duzib192G0844 Durio zibethinus HOM05D000553 ORTHO05D000460 4.7e-19 97.8 52 88.5
Prupe.4G008100 Prunus persica HOM05D000553 ORTHO05D000460 4.0e-18 94.7 47 89.4
Thecc.06G235600 Theobroma cacao HOM05D000553 ORTHO05D000460 5.2e-18 94.4 48 91.7
MD10G1335700 Malus domestica HOM05D000553 ORTHO05D000460 1.3e-16 89.7 47 87.2
GSVIVG01006543001 Vitis vinifera HOM05D000553 ORTHO05D000460 1.7e-16 89.4 47 80.9
Atru.chr1.2358 Acer truncatum HOM05D000553 ORTHO05D000460 3.7e-16 88.2 47 87.2
CANSAT56G2997 Cannabis sativa HOM05D000553 ORTHO05D000460 4.9e-16 87.8 46 84.8
Ciclev10016709m.g Citrus clementina HOM05D000553 ORTHO05D000460 1.1e-15 86.7 47 87.2
RcHm_v2.0_Chr5g0000961 Rosa chinensis HOM05D000553 ORTHO05D000460 1.9e-15 85.9 47 80.9
Sc24g0000350 Simmondsia chinensis HOM05D000553 ORTHO05D000460 1.9e-15 85.9 47 83.0
TWI63G0309 Tripterygium wilfordii HOM05D000553 ORTHO05D000460 3.2e-15 85.1 46 80.4
PGR004G2016 Punica granatum HOM05D000553 ORTHO05D000460 5.4e-15 84.3 48 72.9
HPP92_009569 Vanilla planifolia HOM05D000553 ORTHO05D000460 7.1e-15 84.0 59 61.0
FvH4_3g00710 Fragaria vesca HOM05D000553 ORTHO05D000460 9.2e-15 83.6 47 78.7
FAN21G0565 Fragaria x ananassa HOM05D000553 ORTHO05D000460 9.2e-15 83.6 47 78.7
Eucgr.D01431 Eucalyptus grandis HOM05D000553 ORTHO05D000460 2.1e-14 82.4 65 60.0
EL10Ac8g20223 Beta vulgaris HOM05D000553 ORTHO05D000460 3.5e-14 81.6 47 76.6
TAR626G1198 Trochodendron aralioides HOM05D000553 ORTHO05D000460 1.7e-13 79.3 46 76.1
Os07g0584000 Oryza sativa ssp. japonica HOM05D000553 ORTHO05D000460 1.5e-12 76.3 45 75.6
Sabra06G0011100 Salix brachista HOM05D000553 ORTHO05D000460 1.6e-11 72.8 74 52.7
Potri.006G015500 Populus trichocarpa HOM05D000553 ORTHO05D000460 3.6e-11 71.6 58 60.3
CBR_g42150 Chara braunii HOM05D000553 ORTHO05D000460 1.5e-09 66.2 59 49.2
Os03g0193075 Oryza sativa ssp. japonica HOM05D000553 ORTHO05D000460 5.8e-09 64.3 45 62.2
SEGI_37394 Sequoiadendron giganteum HOM05D000553 ORTHO05D000460 9.9e-09 63.5 47 61.7
AagrBONN_evm.TU.Sc2ySwM_117.3381 Anthoceros agrestis HOM05D000553 ORTHO05D000460 1.3e-08 63.2 47 57.4
Aqoxy1G04003 Aquilegia oxysepala HOM05D000553 ORTHO05D000460 1.3e-08 63.2 52 50.0
Cre08.g377550 Chlamydomonas reinhardtii HOM05D000553 ORTHO05D000460 2.9e-08 62.0 59 47.5
Zm00001eb401200 Zea mays HOM05D000553 ORTHO05D000460 2.9e-08 62.0 45 57.8
DCAR_013120 Daucus carota HOM05D000553 ORTHO05D000460 6.4e-08 60.8 52 57.7
Mapoly0026s0047 Marchantia polymorpha HOM05D000553 ORTHO05D000460 6.4e-08 60.8 47 53.2
Potri.010G190000 Populus trichocarpa HOM05D000553 ORTHO05D000460 8.4e-08 60.5 46 60.9
Sed0019405 Sechium edule HOM05D000553 ORTHO05D000460 8.4e-08 60.5 59 50.8
ClCG11G006240 Citrullus lanatus HOM05D000553 ORTHO05D000460 1.4e-07 59.7 59 49.2
DCAR_015429 Daucus carota HOM05D000553 ORTHO05D000460 1.4e-07 59.7 59 49.2
TAR627G0006 Trochodendron aralioides HOM05D000553 ORTHO05D000460 1.4e-07 59.7 63 49.2
Sed0005413 Sechium edule HOM05D000553 ORTHO05D000460 1.9e-07 59.3 59 49.2
Oeu025641.1 Olea europaea HOM05D000553 ORTHO05D000460 3.2e-07 58.5 52 53.8
Ah.06g184560 Amaranthus hybridus HOM05D000553 ORTHO05D000460 4.2e-07 58.2 59 50.8
CsaV3_6G001750 Cucumis sativus L. HOM05D000553 ORTHO05D000460 4.2e-07 58.2 59 47.5
Cc05_g11760 Coffea canephora HOM05D000553 ORTHO05D000460 5.4e-07 57.8 48 56.2
MELO3C008289.2 Cucumis melo HOM05D000553 ORTHO05D000460 5.4e-07 57.8 59 47.5
Duzib106G1055 Durio zibethinus HOM05D000553 ORTHO05D000460 5.4e-07 57.8 45 57.8
TPR.G2519 Trifolium pratense HOM05D000553 ORTHO05D000460 5.4e-07 57.8 45 60.0
MELO3C025175.2 Cucumis melo HOM05D000553 ORTHO05D000460 7.1e-07 57.4 45 55.6
Dinv34394 Davidia involucrata HOM05D000553 ORTHO05D000460 7.1e-07 57.4 59 47.5
Gorai.012G076700 Gossypium raimondii HOM05D000553 ORTHO05D000460 7.1e-07 57.4 45 55.6
Hma1.2p1_0446F.1_g154560 Hydrangea macrophylla HOM05D000553 ORTHO05D000460 7.1e-07 57.4 52 53.8
TPR.G38428 Trifolium pratense HOM05D000553 ORTHO05D000460 7.1e-07 57.4 46 56.5
EL10Ac4g08235 Beta vulgaris HOM05D000553 ORTHO05D000460 1.2e-06 56.6 47 57.4
CAN.G162.37 Capsicum annuum HOM05D000553 ORTHO05D000460 1.2e-06 56.6 52 53.8
Gohir.A05G329500 Gossypium hirsutum HOM05D000553 ORTHO05D000460 1.2e-06 56.6 45 55.6
Gohir.D04G067500 Gossypium hirsutum HOM05D000553 ORTHO05D000460 1.2e-06 56.6 45 55.6
Psat5g126360 Pisum sativum HOM05D000553 ORTHO05D000460 1.2e-06 56.6 45 60.0
TWI09G1557 Tripterygium wilfordii HOM05D000553 ORTHO05D000460 1.2e-06 56.6 59 47.5
Aqoxy2G00922 Aquilegia oxysepala HOM05D000553 ORTHO05D000460 1.6e-06 56.2 59 49.2
Carub.0003s1054 Capsella rubella HOM05D000553 ORTHO05D000460 1.6e-06 56.2 45 55.6
CARHR135080 Cardamine hirsuta HOM05D000553 ORTHO05D000460 1.6e-06 56.2 52 48.1
Glyma.02G256700 Glycine max HOM05D000553 ORTHO05D000460 1.6e-06 56.2 52 51.9
HanXRQChr12g0370521 Helianthus annuus HOM05D000553 ORTHO05D000460 1.6e-06 56.2 59 49.2
Os10g0369500 Oryza sativa ssp. japonica HOM05D000553 ORTHO05D296485 1.6e-06 56.2 53 52.8
Peaxi162Scf00000g00303 Petunia axillaris HOM05D000553 ORTHO05D000460 1.6e-06 56.2 52 51.9
SMO118G0398 Selaginella moellendorffii HOM05D000553 ORTHO05D000460 1.6e-06 56.2 45 51.1
Hund22885 Selenicereus undatus HOM05D000553 ORTHO05D000460 1.6e-06 56.2 59 47.5
SEGI_28196 Sequoiadendron giganteum HOM05D000553 ORTHO05D000460 1.6e-06 56.2 54 48.1
SGA_v2.0_scaffold240G44097 Striga asiatica HOM05D000553 ORTHO05D000460 1.6e-06 56.2 59 47.5
CSS0011137 Camellia sinensis var. sinensis HOM05D000553 ORTHO05D000460 2.1e-06 55.8 52 51.9
CSS0021514 Camellia sinensis var. sinensis HOM05D000553 ORTHO05D000460 2.1e-06 55.8 52 51.9
ClCG07G004100 Citrullus lanatus HOM05D000553 ORTHO05D017234 2.1e-06 55.8 59 44.1
Lsat_1_v5_gn_8_12320 Lactuca sativa HOM05D000553 ORTHO05D000460 2.1e-06 55.8 59 49.2
Oeu005402.2 Olea europaea HOM05D000553 ORTHO05D000460 2.1e-06 55.8 48 56.2
Actinidia13931 Actinidia chinensis HOM05D000553 ORTHO05D000460 2.7e-06 55.5 52 53.8
Aa31LG5G19490 Aethionema arabicum HOM05D000553 ORTHO05D000460 2.7e-06 55.5 45 57.8
Haze_09467 Corylus avellana HOM05D000553 ORTHO05D000460 2.7e-06 55.5 51 54.9
Glyma.14G060000 Glycine max HOM05D000553 ORTHO05D000460 2.7e-06 55.5 52 51.9
Gohir.A01G061300 Gossypium hirsutum HOM05D000553 ORTHO05D000460 2.7e-06 55.5 52 50.0
Gohir.D01G047900 Gossypium hirsutum HOM05D000553 ORTHO05D000460 2.7e-06 55.5 52 50.0
Gorai.002G067700 Gossypium raimondii HOM05D000553 ORTHO05D000460 2.7e-06 55.5 52 50.0
Potri.008G067100 Populus trichocarpa HOM05D000553 ORTHO05D000460 2.7e-06 55.5 45 57.8
PGSC0003DMG400015367 Solanum tuberosum HOM05D000553 ORTHO05D000460 2.7e-06 55.5 52 51.9
Aqoxy1G02328 Aquilegia oxysepala HOM05D000553 ORTHO05D000460 3.5e-06 55.1 52 50.0
AL4G37760 Arabidopsis lyrata HOM05D000553 ORTHO05D000460 3.5e-06 55.1 52 46.2
AT2G40110 Arabidopsis thaliana HOM05D000553 ORTHO05D000460 3.5e-06 55.1 52 46.2
arahy.Tifrunner.gnm1.ann1.5058JZ Arachis hypogaea HOM05D000553 ORTHO05D000460 3.5e-06 55.1 52 50.0
arahy.Tifrunner.gnm1.ann1.6NP7E0 Arachis hypogaea HOM05D000553 ORTHO05D000460 3.5e-06 55.1 52 50.0
Carub.0004s2228 Capsella rubella HOM05D000553 ORTHO05D000460 3.5e-06 55.1 52 46.2
Medtr3g070330 Medicago truncatula HOM05D000553 ORTHO05D000460 3.5e-06 55.1 45 53.3
SMO144G0120 Selaginella moellendorffii HOM05D000553 ORTHO05D000460 3.5e-06 55.1 41 58.5
THA.LOC104810094 Tarenaya hassleriana HOM05D000553 ORTHO05D000460 3.5e-06 55.1 45 55.6
THA.LOC104810097 Tarenaya hassleriana HOM05D000553 ORTHO05D000460 3.5e-06 55.1 45 55.6
TPR.G7962 Trifolium pratense HOM05D000553 ORTHO05D000460 3.5e-06 55.1 52 50.0
Actinidia09704 Actinidia chinensis HOM05D000553 ORTHO05D000460 4.6e-06 54.7 52 51.9
EL10Ac8g18552 Beta vulgaris HOM05D000553 ORTHO05D000460 4.6e-06 54.7 59 47.5
EL10Ac8g18554 Beta vulgaris HOM05D000553 ORTHO05D000460 4.6e-06 54.7 59 47.5
BcaC02g07353 Brassica carinata HOM05D000553 ORTHO05D000460 4.6e-06 54.7 52 48.1
A04p30060 Brassica napus HOM05D000553 ORTHO05D000460 4.6e-06 54.7 52 48.1
C04p67790 Brassica napus HOM05D000553 ORTHO05D003668 4.6e-06 54.7 52 48.1
BolC4t28283H Brassica oleracea HOM05D000553 ORTHO05D003668 4.6e-06 54.7 52 48.1
BraA04t18500Z Brassica rapa HOM05D000553 ORTHO05D000460 4.6e-06 54.7 52 48.1
Ca_15269_v3 Cicer arietinum L. HOM05D000553 ORTHO05D003668 4.6e-06 54.7 52 48.1
COL.COLO4_36714 Corchorus olitorius HOM05D000553 ORTHO05D000460 4.6e-06 54.7 59 44.1
ECA233G6106 Erigeron canadensis HOM05D000553 ORTHO05D000460 4.6e-06 54.7 52 51.9
FAN09G0351 Fragaria x ananassa HOM05D000553 ORTHO05D000460 4.6e-06 54.7 59 45.8
PGR031G1145 Punica granatum HOM05D000553 ORTHO05D000460 4.6e-06 54.7 52 50.0
Sc10g0002290 Simmondsia chinensis HOM05D000553 ORTHO05D000460 4.6e-06 54.7 52 50.0
PGSC0003DMG401012406 Solanum tuberosum HOM05D000553 ORTHO05D000460 4.6e-06 54.7 52 50.0
TWI39G1121 Tripterygium wilfordii HOM05D000553 ORTHO05D000460 4.6e-06 54.7 52 51.9
unitig_747.g21416 Utricularia gibba HOM05D000553 ORTHO05D000460 4.6e-06 54.7 46 56.5
GSVIVG01033969001 Vitis vinifera HOM05D000553 ORTHO05D000460 4.6e-06 54.7 59 42.4
AT3G11230 Arabidopsis thaliana HOM05D000553 ORTHO05D000460 6.0e-06 54.3 45 55.6
BcaB01g00051 Brassica carinata HOM05D000553 ORTHO05D000460 6.0e-06 54.3 47 51.1
BcaB06g29128 Brassica carinata HOM05D000553 ORTHO05D000460 6.0e-06 54.3 52 48.1
CSS0040155 Camellia sinensis var. sinensis HOM05D000553 ORTHO05D000460 6.0e-06 54.3 52 51.9
FvH4_6g11560 Fragaria vesca HOM05D000553 ORTHO05D000460 6.0e-06 54.3 59 45.8
FAN03G2890 Fragaria x ananassa HOM05D000553 ORTHO05D000460 6.0e-06 54.3 52 50.0
FAN14G3942 Fragaria x ananassa HOM05D000553 ORTHO05D000460 6.0e-06 54.3 59 45.8
Glyma.13G274000 Glycine max HOM05D000553 ORTHO05D000460 6.0e-06 54.3 52 48.1
Lj6g0002024 Lotus japonicus HOM05D000553 ORTHO05D000460 6.0e-06 54.3 59 44.1
PSO541G1930 Papaver somniferum HOM05D000553 ORTHO05D000460 6.0e-06 54.3 48 54.2
Phvul.008G224700 Phaseolus vulgaris HOM05D000553 ORTHO05D000460 6.0e-06 54.3 45 53.3
RcHm_v2.0_Chr1g0370001 Rosa chinensis HOM05D000553 ORTHO05D000460 6.0e-06 54.3 52 50.0
Sopen03g026240 Solanum pennellii HOM05D000553 ORTHO05D000460 6.0e-06 54.3 52 51.9
VMungo0647G1232 Vigna mungo HOM05D000553 ORTHO05D000460 6.0e-06 54.3 45 53.3
Actinidia20728 Actinidia chinensis HOM05D000553 ORTHO05D000460 7.8e-06 53.9 47 51.1
CAN.G360.8 Capsicum annuum HOM05D000553 ORTHO05D000460 7.8e-06 53.9 56 46.4
Dinv23094 Davidia involucrata HOM05D000553 ORTHO05D000460 7.8e-06 53.9 59 47.5
Thhalv10017415m.g Eutrema salsugineum HOM05D000553 ORTHO05D000460 7.8e-06 53.9 52 46.2
FvH4_7g24340 Fragaria vesca HOM05D000553 ORTHO05D000460 7.8e-06 53.9 52 50.0
FAN06G1361 Fragaria x ananassa HOM05D000553 ORTHO05D000460 7.8e-06 53.9 52 50.0
FAN25G0599 Fragaria x ananassa HOM05D000553 ORTHO05D000460 7.8e-06 53.9 52 50.0
Oeu033600.1 Olea europaea HOM05D000553 ORTHO05D000460 7.8e-06 53.9 59 44.1
Psat0s3104g0120 Pisum sativum HOM05D000553 ORTHO05D000460 7.8e-06 53.9 65 43.1
Solyc07g062880.3 Solanum lycopersicum HOM05D000553 ORTHO05D000460 7.8e-06 53.9 52 50.0
Solyc10g076750.2 Solanum lycopersicum HOM05D000553 ORTHO05D000460 7.8e-06 53.9 59 49.2
Solyc12g013920.2 Solanum lycopersicum HOM05D000553 ORTHO05D000460 7.8e-06 53.9 52 50.0
Sopen07g031080 Solanum pennellii HOM05D000553 ORTHO05D000460 7.8e-06 53.9 52 50.0
Sopen10g028390 Solanum pennellii HOM05D000553 ORTHO05D000460 7.8e-06 53.9 59 49.2
Sopen12g005680 Solanum pennellii HOM05D000553 ORTHO05D000460 7.8e-06 53.9 52 50.0
GSVIVG01014293001 Vitis vinifera HOM05D000553 ORTHO05D000460 7.8e-06 53.9 59 45.8


User provided reference genes

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