Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31808 Corchorus olitorius HOM05D002950 ORTHO05D006701 1.4e-136 489.6 236 100.0
Thecc.06G225000 Theobroma cacao HOM05D002950 ORTHO05D006701 3.6e-105 385.2 196 91.3
Duzib192G0016 Durio zibethinus HOM05D002950 ORTHO05D006701 4.0e-104 381.7 196 89.8
Gohir.A06G206400 Gossypium hirsutum HOM05D002950 ORTHO05D006701 4.9e-102 374.8 196 86.7
Gohir.D06G215200 Gossypium hirsutum HOM05D002950 ORTHO05D006701 8.4e-102 374.0 196 87.2
Gorai.010G251200 Gossypium raimondii HOM05D002950 ORTHO05D006701 9.3e-101 370.5 196 86.7
Gohir.A10G011900 Gossypium hirsutum HOM05D002950 ORTHO05D006701 5.1e-99 364.8 198 85.4
Gorai.011G012600 Gossypium raimondii HOM05D002950 ORTHO05D006701 7.4e-98 360.9 198 84.8
Gohir.D10G011300 Gossypium hirsutum HOM05D002950 ORTHO05D006701 4.0e-96 355.1 197 83.8
TWI38G0503 Tripterygium wilfordii HOM05D002950 ORTHO05D006701 6.5e-94 347.8 196 81.1
Ciclev10015825m.g Citrus clementina HOM05D002950 ORTHO05D006701 9.3e-93 344.0 196 80.1
Gohir.A06G150000 Gossypium hirsutum HOM05D002950 ORTHO05D006701 1.2e-92 343.6 196 81.6
Gohir.D06G156200 Gossypium hirsutum HOM05D002950 ORTHO05D006701 1.6e-92 343.2 196 82.1
Cpa.g.sc152.37 Carica papaya HOM05D002950 ORTHO05D006701 2.3e-91 339.3 195 79.5
Dinv13926 Davidia involucrata HOM05D002950 ORTHO05D006701 5.1e-91 338.2 197 82.7
Cfa000185 Carpinus fangiana HOM05D002950 ORTHO05D006701 1.1e-90 337.0 197 78.7
CSS0003009 Camellia sinensis var. sinensis HOM05D002950 ORTHO05D006701 5.7e-90 334.7 197 79.2
TWI63G0535 Tripterygium wilfordii HOM05D002950 ORTHO05D006701 5.7e-90 334.7 196 80.1
Prupe.4G017500 Prunus persica HOM05D002950 ORTHO05D006701 7.4e-90 334.3 196 79.1
Haze_06832 Corylus avellana HOM05D002950 ORTHO05D006701 9.6e-90 334.0 197 78.2
MD00G1202600 Malus domestica HOM05D002950 ORTHO05D006701 1.6e-89 333.2 196 76.5
Haze_06837 Corylus avellana HOM05D002950 ORTHO05D006701 2.8e-89 332.4 197 77.7
Lalb_Chr15g0087701 Lupinus albus HOM05D002950 ORTHO05D006701 2.8e-89 332.4 197 77.2
Potri.011G007900 Populus trichocarpa HOM05D002950 ORTHO05D006701 2.8e-89 332.4 197 78.7
GSVIVG01012680001 Vitis vinifera HOM05D002950 ORTHO05D006701 3.7e-89 332.0 196 78.6
Lj1A1233T64 Lonicera japonica HOM05D002950 ORTHO05D006701 4.8e-89 331.6 198 79.3
DCAR_004234 Daucus carota HOM05D002950 ORTHO05D006701 1.1e-88 330.5 197 78.7
Lalb_Chr20g0118861 Lupinus albus HOM05D002950 ORTHO05D006701 1.1e-88 330.5 197 77.7
Phvul.003G080900 Phaseolus vulgaris HOM05D002950 ORTHO05D006701 1.1e-88 330.5 197 76.6
VMungo1215G3037 Vigna mungo HOM05D002950 ORTHO05D006701 1.4e-88 330.1 197 76.1
Glyma.17G011300 Glycine max HOM05D002950 ORTHO05D006701 2.4e-88 329.3 197 77.7
Lj6g0020889 Lotus japonicus HOM05D002950 ORTHO05D006701 2.4e-88 329.3 197 76.6
PGR142G0305 Punica granatum HOM05D002950 ORTHO05D006701 2.4e-88 329.3 196 77.6
MD05G1349900 Malus domestica HOM05D002950 ORTHO05D006701 6.9e-88 327.8 196 76.0
Manes.17G028900 Manihot esculenta HOM05D002950 ORTHO05D006701 9.0e-88 327.4 197 76.1
Potri.004G007400 Populus trichocarpa HOM05D002950 ORTHO05D006701 9.0e-88 327.4 198 78.8
Ca_21068_v3 Cicer arietinum L. HOM05D002950 ORTHO05D006701 1.5e-87 326.6 198 77.3
Sabra04G0004200 Salix brachista HOM05D002950 ORTHO05D006701 1.5e-87 326.6 197 77.7
FAN21G2270 Fragaria x ananassa HOM05D002950 ORTHO05D006701 2.6e-87 325.9 196 76.0
RcHm_v2.0_Chr5g0002541 Rosa chinensis HOM05D002950 ORTHO05D006701 4.5e-87 325.1 196 76.0
Glyma.15G110400 Glycine max HOM05D002950 ORTHO05D006701 7.6e-87 324.3 197 76.1
FvH4_3g01690 Fragaria vesca HOM05D002950 ORTHO05D006701 1.0e-86 323.9 196 75.5
arahy.Tifrunner.gnm1.ann1.C5RAU0 Arachis hypogaea HOM05D002950 ORTHO05D006701 6.5e-86 321.2 197 75.1
FAN25G0098 Fragaria x ananassa HOM05D002950 ORTHO05D006701 6.5e-86 321.2 196 75.0
Phvul.006G147700 Phaseolus vulgaris HOM05D002950 ORTHO05D006701 6.5e-86 321.2 197 76.1
Sabra11G0006700 Salix brachista HOM05D002950 ORTHO05D006701 6.5e-86 321.2 197 77.2
Cc00_g24740 Coffea canephora HOM05D002950 ORTHO05D006701 8.4e-86 320.9 196 75.0
Cc09_g01420 Coffea canephora HOM05D002950 ORTHO05D006701 8.4e-86 320.9 196 75.0
Sabra11G0009300 Salix brachista HOM05D002950 ORTHO05D006701 8.4e-86 320.9 197 77.2
Glyma.07G262800 Glycine max HOM05D002950 ORTHO05D006701 1.9e-85 319.7 197 75.6
arahy.Tifrunner.gnm1.ann1.QTWL09 Arachis hypogaea HOM05D002950 ORTHO05D006701 2.5e-85 319.3 197 74.6
Manes.16G004000 Manihot esculenta HOM05D002950 ORTHO05D006701 2.5e-85 319.3 197 75.6
CiPaw.09G095500 Carya illinoinensis HOM05D002950 ORTHO05D006701 4.2e-85 318.5 198 77.8
Eucgr.E04010 Eucalyptus grandis HOM05D002950 ORTHO05D006701 4.2e-85 318.5 196 74.5
TAR627G0195 Trochodendron aralioides HOM05D002950 ORTHO05D006701 4.2e-85 318.5 198 74.7
Aqoxy1G03068 Aquilegia oxysepala HOM05D002950 ORTHO05D006701 5.5e-85 318.2 198 74.7
TPR.G13032 Trifolium pratense HOM05D002950 ORTHO05D006701 5.5e-85 318.2 197 75.1
Psat1g178880 Pisum sativum HOM05D002950 ORTHO05D006701 7.1e-85 317.8 197 75.1
Actinidia26894 Actinidia chinensis HOM05D002950 ORTHO05D006701 9.3e-85 317.4 197 76.1
Peaxi162Scf00178g01014 Petunia axillaris HOM05D002950 ORTHO05D006701 1.6e-84 316.6 193 77.2
Duzib160G0808 Durio zibethinus HOM05D002950 ORTHO05D006701 7.9e-84 314.3 159 88.1
Medtr2g023970 Medicago truncatula HOM05D002950 ORTHO05D006701 7.9e-84 314.3 197 74.1
Sopen02g025590 Solanum pennellii HOM05D002950 ORTHO05D006701 7.9e-84 314.3 196 75.0
Solyc02g080900.3 Solanum lycopersicum HOM05D002950 ORTHO05D006701 1.0e-83 313.9 196 74.5
THA.LOC104809485 Tarenaya hassleriana HOM05D002950 ORTHO05D006701 1.0e-83 313.9 198 73.7
VMungo0540G1806 Vigna mungo HOM05D002950 ORTHO05D006701 1.3e-83 313.5 197 74.6
Ca_00681_v3 Cicer arietinum L. HOM05D002950 ORTHO05D006701 1.8e-83 313.2 197 72.6
CAN.G1014.25 Capsicum annuum HOM05D002950 ORTHO05D006701 3.0e-83 312.4 196 74.5
Medtr4g132450 Medicago truncatula HOM05D002950 ORTHO05D006701 3.9e-83 312.0 198 73.2
Nn1g03455 Nelumbo nucifera HOM05D002950 ORTHO05D006701 3.9e-83 312.0 198 73.7
Sed0007514 Sechium edule HOM05D002950 ORTHO05D006701 3.9e-83 312.0 198 72.2
ClCG03G004520 Citrullus lanatus HOM05D002950 ORTHO05D006701 6.7e-83 311.2 198 72.7
PGSC0003DMG400016467 Solanum tuberosum HOM05D002950 ORTHO05D006701 6.7e-83 311.2 196 74.5
BraA06t24142Z Brassica rapa HOM05D002950 ORTHO05D006701 8.7e-83 310.8 195 74.4
Rhsim13G0151800 Rhododendron simsii HOM05D002950 ORTHO05D006701 8.7e-83 310.8 198 74.2
A06p09520 Brassica napus HOM05D002950 ORTHO05D006701 1.1e-82 310.5 195 73.8
Hma1.2p1_0298F.1_g117630 Hydrangea macrophylla HOM05D002950 ORTHO05D006701 1.1e-82 310.5 199 75.4
Sp1g10580 Schrenkiella parvula HOM05D002950 ORTHO05D006701 1.9e-82 309.7 195 72.8
CARHR012250 Cardamine hirsuta HOM05D002950 ORTHO05D006701 2.5e-82 309.3 195 73.3
HanXRQChr16g0516971 Helianthus annuus HOM05D002950 ORTHO05D006701 3.3e-82 308.9 197 72.6
TPR.G37104 Trifolium pratense HOM05D002950 ORTHO05D006701 3.3e-82 308.9 198 72.7
AL1G23110 Arabidopsis lyrata HOM05D002950 ORTHO05D006701 5.7e-82 308.1 195 72.8
C05p11240 Brassica napus HOM05D002950 ORTHO05D006701 5.7e-82 308.1 195 73.3
AT1G11915 Arabidopsis thaliana HOM05D002950 ORTHO05D006701 7.4e-82 307.8 197 72.1
Thhalv10008171m.g Eutrema salsugineum HOM05D002950 ORTHO05D006701 1.6e-81 306.6 195 73.3
CANSAT56G1058 Cannabis sativa HOM05D002950 ORTHO05D006701 2.2e-81 306.2 205 68.8
Carub.0001s1160 Capsella rubella HOM05D002950 ORTHO05D006701 2.8e-81 305.8 195 72.8
PSO210G6869 Papaver somniferum HOM05D002950 ORTHO05D006701 1.1e-80 303.9 198 71.7
Gorai.010G182600 Gossypium raimondii HOM05D002950 ORTHO05D006701 1.8e-80 303.1 176 80.1
EL10Ac8g20102 Beta vulgaris HOM05D002950 ORTHO05D006701 5.3e-80 301.6 200 70.0
Lsat_1_v5_gn_4_59300 Lactuca sativa HOM05D002950 ORTHO05D006701 2.0e-79 299.7 198 72.7
BolC5t29872H Brassica oleracea HOM05D002950 ORTHO05D006701 2.6e-79 299.3 204 70.1
Nitab4.5_0001409g0060 Nicotiana tabacum HOM05D002950 ORTHO05D006701 1.7e-78 296.6 196 73.0
PSO832G0216 Papaver somniferum HOM05D002950 ORTHO05D006701 6.5e-78 294.7 198 69.7
MSTRG.12897 Avicennia marina HOM05D002950 ORTHO05D006701 1.1e-77 293.9 194 70.6
Nitab4.5_0005781g0010 Nicotiana tabacum HOM05D002950 ORTHO05D006701 1.4e-77 293.5 196 71.4
vmacro03674 Vaccinium macrocarpon HOM05D002950 ORTHO05D006701 1.4e-77 293.5 184 75.0
MELO3C002430.2 Cucumis melo HOM05D002950 ORTHO05D006701 1.9e-77 293.1 197 69.5
Actinidia02349 Actinidia chinensis HOM05D002950 ORTHO05D006701 5.5e-77 291.6 193 72.5
Ah.14g087900 Amaranthus hybridus HOM05D002950 ORTHO05D006701 2.1e-76 289.7 200 68.0
CsaV3_1G010400 Cucumis sativus L. HOM05D002950 ORTHO05D006701 5.1e-75 285.0 198 66.2
AUR62021916 Chenopodium quinoa HOM05D002950 ORTHO05D006701 6.7e-75 284.6 196 68.9
Oeu061580.1 Olea europaea HOM05D002950 ORTHO05D006701 4.3e-74 282.0 196 67.3
Psat4g005680 Pisum sativum HOM05D002950 ORTHO05D006701 1.7e-73 280.0 183 72.7
SalBow7G4389 Salvia bowleyana HOM05D002950 ORTHO05D006701 1.4e-72 276.9 195 65.1
Hund23446 Selenicereus undatus HOM05D002950 ORTHO05D006701 1.4e-72 276.9 197 65.0
Migut.H01951 Erythranthe guttata HOM05D002950 ORTHO05D006701 1.8e-72 276.6 196 63.3
Sed0013175 Sechium edule HOM05D002950 ORTHO05D006701 1.2e-71 273.9 196 63.3
ClCG01G021760 Citrullus lanatus HOM05D002950 ORTHO05D006701 3.4e-71 272.3 199 66.8
CsaV3_6G048820 Cucumis sativus L. HOM05D002950 ORTHO05D006701 2.1e-68 263.1 199 64.8
ECA234G0282 Erigeron canadensis HOM05D002950 ORTHO05D006701 1.4e-67 260.4 172 70.3
MELO3C007410.2 Cucumis melo HOM05D002950 ORTHO05D006701 3.9e-67 258.8 199 63.8
MBI07_g09093_MAGBIO Magnolia biondii HOM05D002950 ORTHO05D006701 2.8e-65 252.7 200 58.5
Nn1g07219 Nelumbo nucifera HOM05D002950 ORTHO05D006701 1.8e-64 250.0 151 73.5
Nitab4.5_0000005g0180 Nicotiana tabacum HOM05D002950 ORTHO05D006701 4.1e-64 248.8 181 65.2
Os06g0364500 Oryza sativa ssp. japonica HOM05D002950 ORTHO05D006701 1.0e-59 234.2 201 56.7
Zm00001eb169960 Zea mays HOM05D002950 ORTHO05D006701 1.8e-59 233.4 200 56.5
SGA_v2.0_scaffold130G34353 Striga asiatica HOM05D002950 ORTHO05D006701 8.2e-57 224.6 193 56.0
AUR62012740 Chenopodium quinoa HOM05D002950 ORTHO05D006701 4.1e-56 222.2 200 57.5
Sc17g0007510 Simmondsia chinensis HOM05D002950 ORTHO05D006701 2.5e-53 213.0 139 66.2
Dinv20085 Davidia involucrata HOM05D002950 ORTHO05D006701 4.0e-51 205.7 131 76.3
HPP92_023145 Vanilla planifolia HOM05D002950 ORTHO05D006701 7.5e-50 201.4 197 47.7
unitig_26.g9523 Utricularia gibba HOM05D002950 ORTHO05D006701 1.7e-49 200.3 199 49.2
Peaxi162Scf00294g01312 Petunia axillaris HOM05D002950 ORTHO05D006701 9.1e-48 194.5 201 52.2
ATR0585G093 Amborella trichopoda HOM05D002950 ORTHO05D006701 3.8e-46 189.1 138 58.7
BcaB02g06442 Brassica carinata HOM05D002950 ORTHO05D006701 5.0e-46 188.7 138 64.5
Psat6g002320 Pisum sativum HOM05D002950 ORTHO05D006701 8.5e-46 188.0 138 68.1
BcaB02g06445 Brassica carinata HOM05D002950 ORTHO05D006701 2.5e-45 186.4 133 63.9
Atru.chr10.2263 Acer truncatum HOM05D002950 ORTHO05D006701 1.3e-41 174.1 97 81.4
C08p15070 Brassica napus HOM05D002950 ORTHO05D006701 3.3e-37 159.5 172 48.8
BolC8t49137H Brassica oleracea HOM05D002950 ORTHO05D006701 9.5e-37 157.9 193 45.1
MD10G1324600 Malus domestica HOM05D002950 ORTHO05D006701 2.4e-32 143.3 76 82.9
BcaB03g13218 Brassica carinata HOM05D002950 ORTHO05D006701 5.2e-27 125.6 70 81.4
TPR.G37029 Trifolium pratense HOM05D002950 ORTHO05D006701 6.8e-27 125.2 84 66.7
Atru.chr10.2264 Acer truncatum HOM05D002950 ORTHO05D006701 3.4e-26 122.9 87 69.0
MD10G1324700 Malus domestica HOM05D002950 ORTHO05D006701 3.7e-25 119.4 71 73.2
CDE07G1520 Ceratophyllum demersum HOM05D002950 ORTHO05D006701 4.6e-23 112.5 101 55.4
Glyma.09G005800 Glycine max HOM05D002950 ORTHO05D006701 5.0e-22 109.0 80 68.8
arahy.Tifrunner.gnm1.ann1.GJ2S1F Arachis hypogaea HOM05D002950 ORTHO05D006701 1.1e-19 101.3 140 43.6
Dinv34069 Davidia involucrata HOM05D000677 ORTHO05D000727 7.8e-07 58.5 159 32.1
SEGI_13335 Sequoiadendron giganteum HOM05D003287 ORTHO05D003688 3.0e-06 56.6 166 31.3
Cc03_g00300 Coffea canephora HOM05D002950 ORTHO05D009601 8.6e-06 55.1 101 36.6
Cc11_g11990 Coffea canephora HOM05D005706 ORTHO05D007474 8.6e-06 55.1 143 32.9
Phvul.003G119500 Phaseolus vulgaris HOM05D002950 ORTHO05D009601 8.6e-06 55.1 108 32.4


User provided reference genes

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