Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 3.2e-237 824.7 414 100.0
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 1.6e-201 706.1 412 85.4
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 8.2e-177 624.0 413 77.5
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 8.2e-177 624.0 413 77.5
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 2.6e-175 619.0 413 77.0
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 3.4e-167 592.0 422 72.3
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 2.7e-164 582.4 438 69.4
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 1.8e-163 579.7 415 71.1
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 5.1e-163 578.2 478 65.1
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 2.2e-161 572.8 416 70.2
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 1.0e-158 563.9 442 65.2
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 1.3e-158 563.5 418 69.4
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 3.2e-157 558.9 421 68.6
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 5.5e-157 558.1 496 61.5
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 9.4e-157 557.4 419 67.8
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 4.0e-155 552.0 417 68.6
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 1.5e-154 550.1 415 68.4
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 2.8e-153 545.8 443 66.6
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 1.4e-152 543.5 416 67.8
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 2.4e-152 542.7 419 67.8
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 7.7e-151 537.7 419 67.3
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.5e-149 533.5 419 66.8
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 2.7e-148 529.3 457 62.8
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 2.7e-148 529.3 419 67.8
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 6.1e-148 528.1 417 65.7
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 6.1e-148 528.1 416 65.9
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 1.0e-147 527.3 416 65.9
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 1.4e-147 526.9 427 63.9
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 1.4e-147 526.9 427 65.1
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 1.8e-147 526.6 417 66.2
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 1.3e-145 520.4 447 62.9
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 1.7e-145 520.0 414 65.7
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 2.8e-145 519.2 474 60.3
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 3.7e-145 518.8 414 65.5
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 7.0e-144 514.6 412 65.3
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 2.0e-143 513.1 422 63.3
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 1.7e-142 510.0 430 62.1
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 2.9e-142 509.2 429 62.2
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 8.5e-142 507.7 421 64.8
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 8.5e-142 507.7 438 61.6
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 1.5e-141 506.9 422 64.5
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 1.9e-141 506.5 428 62.4
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 3.2e-141 505.8 410 63.7
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 7.2e-141 504.6 421 63.4
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 7.2e-141 504.6 432 61.1
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 1.2e-140 503.8 419 64.4
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 1.4e-139 500.4 417 62.4
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 1.4e-139 500.4 438 61.2
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 3.0e-139 499.2 424 63.4
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 3.0e-139 499.2 472 58.7
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 1.2e-138 497.3 432 60.4
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 7.5e-138 494.6 416 63.0
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 7.5e-138 494.6 472 58.5
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 9.8e-138 494.2 417 62.4
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 1.7e-137 493.4 414 63.0
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 2.8e-137 492.7 416 62.5
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 3.7e-137 492.3 432 61.1
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 4.9e-137 491.9 416 62.5
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 1.8e-136 490.0 421 62.0
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 2.0e-135 486.5 432 60.2
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 3.8e-134 482.3 453 57.4
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 5.0e-134 481.9 454 57.9
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 5.0e-134 481.9 420 60.0
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 2.5e-133 479.6 416 61.5
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 8.0e-132 474.6 452 57.7
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 1.7e-129 466.8 452 56.6
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 6.4e-129 464.9 487 52.0
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 6.4e-129 464.9 458 55.5
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 1.1e-128 464.2 494 51.8
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 1.1e-128 464.2 463 52.7
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 1.4e-128 463.8 534 49.6
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 1.4e-128 463.8 452 56.6
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 5.4e-128 461.8 421 59.9
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 7.0e-128 461.5 432 58.1
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 7.8e-127 458.0 465 54.2
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 3.6e-124 449.1 433 58.4
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 6.2e-124 448.4 289 73.7
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 1.0e-123 447.6 458 53.5
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 2.3e-123 446.4 440 56.6
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 5.2e-123 445.3 525 48.2
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 1.1e-120 437.6 420 58.1
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 1.1e-120 437.6 279 74.9
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.3e-118 430.6 520 48.7
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 3.0e-118 429.5 423 54.4
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 3.9e-118 429.1 423 54.1
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 9.5e-117 424.5 314 67.2
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 1.4e-115 420.6 439 51.5
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.9e-109 400.2 364 57.1
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 9.5e-109 397.9 274 68.2
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 1.2e-108 397.5 512 46.1
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 6.2e-108 395.2 315 64.4
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 3.1e-107 392.9 421 54.2
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 5.2e-107 392.1 442 49.1
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 6.8e-107 391.7 279 67.7
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 1.3e-105 387.5 302 59.3
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 2.9e-105 386.3 281 62.3
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 3.2e-104 382.9 272 67.3
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 5.1e-102 375.6 292 63.4
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 1.9e-101 373.6 526 44.3
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 1.1e-99 367.9 281 63.7
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 1.1e-99 367.9 268 63.4
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 5.2e-99 365.5 280 64.6
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 1.0e-94 351.3 266 61.3
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.3e-94 350.9 270 58.9
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 6.6e-94 348.6 266 60.5
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 4.3e-93 345.9 233 71.7
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 2.1e-92 343.6 267 60.7
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 5.1e-86 322.4 247 60.3
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 1.5e-85 320.9 197 76.6
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 1.9e-85 320.5 271 57.9
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 1.2e-82 311.2 294 51.7
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.3e-78 297.0 268 55.6
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.5e-77 293.5 279 53.8
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.5e-74 284.3 271 53.5
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 5.5e-72 275.8 173 75.1
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 4.3e-69 266.2 189 64.6
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 4.2e-64 249.6 227 63.4
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 5.7e-61 239.2 235 51.5
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 6.3e-60 235.7 288 46.2
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 3.8e-57 226.5 211 59.7
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 1.0e-54 218.4 268 44.4
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 5.1e-54 216.1 288 43.1
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 5.7e-53 212.6 174 58.6
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 5.9e-50 202.6 220 55.9
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 5.9e-50 202.6 137 67.2
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 2.5e-48 197.2 137 66.4
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 6.1e-47 192.6 133 66.9
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 8.8e-46 188.7 256 41.8
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 1.8e-43 181.0 304 36.8
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 5.9e-42 176.0 320 36.2
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 7.7e-42 175.6 102 76.5
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 4.4e-37 159.8 292 35.3
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.6e-34 151.4 167 49.1
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 1.8e-27 127.9 289 31.8
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 2.4e-27 127.5 98 58.2
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 5.4e-27 126.3 78 75.6
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 1.2e-26 125.2 258 40.7
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 6.5e-25 119.4 119 48.7
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 6.5e-25 119.4 297 29.6
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 4.0e-22 110.2 148 54.1
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 3.8e-17 93.6 171 40.4
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 6.8e-14 82.8 55 61.8
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 1.5e-13 81.6 109 38.5
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 2.6e-13 80.9 159 40.3
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.0e-09 68.9 63 50.8
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 3.0e-09 67.4 67 50.7
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.5e-08 65.1 103 35.9
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.7e-07 60.1 108 39.8


User provided reference genes

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