Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 1.1e-113 413.3 217 100.0
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 2.1e-91 339.3 217 83.9
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 2.0e-86 322.8 215 82.8
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 4.4e-81 305.1 218 78.0
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.7e-75 285.0 217 74.2
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.4e-74 283.5 217 73.7
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.6e-73 279.3 217 72.8
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.2e-66 255.0 218 69.7
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.4e-64 248.1 218 67.9
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.4e-63 246.9 226 65.9
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 6.6e-61 238.0 217 65.9
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 3.3e-60 235.7 225 61.3
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 4.3e-60 235.3 213 66.2
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 2.1e-59 233.0 213 65.7
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 1.3e-56 223.8 214 61.7
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.7e-56 223.4 211 61.1
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 2.2e-56 223.0 206 66.5
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.4e-56 221.5 219 63.9
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 6.4e-56 221.5 219 63.9
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 1.1e-55 220.7 214 62.1
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.4e-55 220.3 215 62.8
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.9e-55 219.9 214 62.6
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.4e-55 219.5 200 65.5
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.2e-54 217.2 216 61.6
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 4.6e-54 215.3 214 60.7
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 3.0e-53 212.6 213 61.0
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 8.7e-53 211.1 218 60.6
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 4.3e-52 208.8 212 57.5
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 4.3e-52 208.8 217 61.3
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.0e-49 199.9 219 61.2
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 8.4e-48 194.5 228 56.1
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.1e-47 194.1 196 58.2
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 3.2e-47 192.6 220 56.8
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 4.2e-47 192.2 228 56.1
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 4.2e-47 192.2 193 61.7
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 2.7e-46 189.5 215 56.3
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 3.5e-46 189.1 204 58.8
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.3e-45 187.2 214 56.1
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 3.0e-45 186.0 219 54.8
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 5.1e-45 185.3 221 54.3
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 1.1e-44 184.1 202 58.9
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 4.3e-44 182.2 228 54.4
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 2.8e-43 179.5 202 56.9
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.8e-43 179.5 199 58.3
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 3.6e-43 179.1 219 52.5
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 5.8e-41 171.8 228 52.2
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 7.6e-41 171.4 217 52.1
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 1.3e-40 170.6 219 53.0
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.7e-40 170.2 224 51.8
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.7e-40 170.2 199 57.3
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 3.8e-40 169.1 224 52.7
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 1.1e-39 167.5 213 54.9
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.9e-39 166.8 214 52.8
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 4.2e-39 165.6 213 52.6
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 3.5e-38 162.5 221 50.2
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 6.0e-38 161.8 218 50.0
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 6.0e-38 161.8 217 47.0
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 1.3e-37 160.6 218 50.0
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 1.1e-36 157.5 195 52.8
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 1.9e-36 156.8 226 48.2
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.9e-36 156.8 206 53.4
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 2.5e-36 156.4 183 56.3
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 5.6e-36 155.2 216 50.0
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.6e-35 153.7 199 52.3
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 1.6e-35 153.7 206 53.4
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.1e-35 153.3 197 49.7
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 3.7e-35 152.5 196 53.6
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 4.8e-35 152.1 217 50.2
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.8e-34 150.2 203 51.2
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 2.4e-34 149.8 212 50.0
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 5.3e-34 148.7 230 50.4
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 6.9e-34 148.3 149 59.7
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 2.0e-33 146.7 203 52.7
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 2.6e-33 146.4 219 49.8
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 3.4e-33 146.0 197 52.3
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 4.5e-33 145.6 218 48.6
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.9e-31 140.2 174 52.9
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 2.5e-31 139.8 181 51.4
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.5e-31 139.8 219 48.4
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 5.5e-31 138.7 221 49.3
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 7.1e-31 138.3 221 48.0
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 7.9e-30 134.8 213 48.4
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.3e-29 134.0 199 49.2
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 1.8e-29 133.7 196 49.5
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.8e-29 133.7 201 46.8
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 8.7e-29 131.3 216 49.5
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.1e-28 131.0 223 45.7
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 2.5e-28 129.8 211 44.1
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 2.5e-28 129.8 190 51.6
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 9.6e-28 127.9 229 44.1
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.4e-26 124.0 202 46.5
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.4e-26 124.0 220 43.2
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 1.8e-26 123.6 168 50.6
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.4e-26 123.2 179 52.0
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 2.4e-26 123.2 221 43.4
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 3.1e-26 122.9 220 43.2
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 1.2e-25 120.9 192 45.3
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 1.3e-24 117.5 215 42.3
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 2.2e-24 116.7 181 45.9
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 5.0e-24 115.5 193 45.1
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 6.5e-24 115.2 182 45.6
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.4e-23 114.0 193 41.5
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 1.9e-23 113.6 185 44.9
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 1.9e-23 113.6 151 52.3
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 5.5e-23 112.1 201 43.8
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 5.5e-23 112.1 211 43.6
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 9.3e-23 111.3 217 41.5
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 1.6e-22 110.5 177 48.6
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 3.6e-22 109.4 215 41.4
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 3.6e-22 109.4 201 46.8
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 7.9e-22 108.2 215 43.7
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 3.0e-21 106.3 193 42.5
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.5e-20 104.0 198 40.9
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 4.3e-20 102.4 196 43.9
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 9.7e-20 101.3 202 44.1
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 2.2e-19 100.1 192 41.1
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 1.4e-18 97.4 187 44.4
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.4e-18 97.4 197 42.6
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 1.8e-18 97.1 201 41.3
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 1.8e-18 97.1 201 41.3
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 1.8e-18 97.1 199 40.7
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 4.1e-18 95.9 205 41.5
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 1.2e-17 94.4 197 42.1
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 1.5e-17 94.0 168 45.2
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 2.0e-17 93.6 187 42.8
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 2.0e-17 93.6 185 43.8
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 2.0e-17 93.6 187 42.8
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 3.4e-17 92.8 187 42.2
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 1.0e-16 91.3 187 42.8
Gohir.A05G312801 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.3e-16 90.9 72 69.4
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 2.9e-16 89.7 187 41.7
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 5.0e-16 89.0 199 42.2
Gohir.A05G327000 Gossypium hirsutum HOM05D002183 ORTHO05D004706 1.1e-15 87.8 68 70.6
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 1.4e-15 87.4 194 38.1
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 1.4e-15 87.4 195 40.5
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.9e-15 87.0 200 37.5
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 3.2e-15 86.3 124 46.8
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 3.2e-15 86.3 185 41.6
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 3.2e-15 86.3 201 41.8
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 5.5e-15 85.5 199 37.2
Gohir.A12G262800 Gossypium hirsutum HOM05D002183 ORTHO05D002169 7.2e-15 85.1 102 52.0
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 1.2e-14 84.3 145 49.0
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 1.6e-14 84.0 170 40.6
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 2.1e-14 83.6 61 67.2
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 2.7e-14 83.2 194 39.2
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 7.9e-14 81.6 209 39.7
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 1.5e-12 77.4 187 39.6
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 3.3e-12 76.3 194 36.6
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 3.3e-12 76.3 202 33.2
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.3e-11 74.3 87 51.7
ClCG01G022190 Citrullus lanatus HOM05D004361 ORTHO05D004706 6.3e-11 72.0 216 34.7
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 2.4e-10 70.1 214 34.1
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 5.3e-10 68.9 178 38.2
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 9.1e-10 68.2 201 34.8
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 2.6e-09 66.6 244 31.1
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 2.9e-08 63.2 197 35.0
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 3.8e-08 62.8 181 35.9
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 5.0e-08 62.4 135 43.0
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 1.1e-07 61.2 176 36.4
Os07g0530700 Oryza sativa ssp. japonica HOM05D035907 ORTHO05D004706 1.1e-07 61.2 97 40.2
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 4.2e-07 59.3 244 30.7
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 4.2e-07 59.3 85 48.2
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 1.2e-06 57.8 53 56.6
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 3.6e-06 56.2 162 32.7
TPR.G22022 Trifolium pratense HOM05D004361 ORTHO05D004706 7.9e-06 55.1 97 43.3


User provided reference genes

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