Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 0.0e+00 1430.6 750 100.0
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 8.1e-308 1060.1 751 75.5
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 4.4e-306 1054.3 751 75.0
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 7.9e-279 963.8 750 68.9
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.0e-278 963.4 752 68.9
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.0e-278 963.4 750 68.9
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 6.6e-217 758.1 745 57.0
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 3.6e-215 752.3 748 57.6
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 1.5e-213 746.9 746 57.2
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 2.4e-211 739.6 762 55.9
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 1.0e-209 734.2 761 55.8
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 7.1e-203 711.4 739 55.6
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 6.0e-202 708.4 724 55.2
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 2.3e-201 706.4 759 54.2
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 5.8e-197 691.8 760 53.2
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 3.8e-196 689.1 760 53.3
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 1.6e-194 683.7 756 53.0
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 5.1e-193 678.7 760 52.6
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.2e-191 674.1 758 52.5
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 3.6e-191 672.5 761 52.4
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 1.7e-188 663.7 748 52.5
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.2e-188 663.3 759 51.8
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 4.9e-188 662.1 763 52.7
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 1.9e-184 650.2 743 51.4
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 2.5e-184 649.8 761 51.1
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 2.4e-182 643.3 756 51.3
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 1.8e-177 627.1 759 50.1
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 4.3e-176 622.5 763 49.8
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 1.2e-173 614.4 759 48.2
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 7.6e-173 611.7 719 50.5
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 4.9e-172 609.0 656 53.8
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 5.5e-171 605.5 711 50.1
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 2.7e-170 603.2 703 50.6
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 1.0e-169 601.3 708 49.4
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 1.1e-168 597.8 709 50.1
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 9.6e-168 594.7 760 48.7
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 3.7e-167 592.8 698 50.9
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 1.8e-166 590.5 747 46.7
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 3.1e-166 589.7 721 48.8
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 1.2e-165 587.8 748 48.1
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 2.3e-161 573.5 763 48.8
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 4.3e-160 569.3 701 47.8
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 7.4e-160 568.5 758 46.8
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 1.5e-157 560.8 724 48.1
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 1.4e-155 554.3 776 45.5
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 4.2e-155 552.7 708 46.9
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 7.2e-155 552.0 707 47.0
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 4.3e-152 542.7 765 43.3
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 9.7e-152 541.6 719 45.2
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 3.4e-149 533.1 704 45.3
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 3.4e-149 533.1 767 44.6
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 9.4e-147 525.0 757 43.9
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 2.3e-145 520.4 767 44.2
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 3.0e-145 520.0 755 42.8
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 4.8e-143 512.7 771 43.2
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 5.3e-142 509.2 722 44.9
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.0e-140 505.0 773 41.8
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.0e-140 505.0 773 41.8
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 1.0e-140 505.0 750 43.1
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 1.4e-139 501.1 731 43.2
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 1.8e-137 494.2 754 42.0
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 8.8e-137 491.9 769 43.7
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 1.1e-134 485.0 744 43.1
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 1.1e-134 485.0 688 46.8
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 9.4e-131 471.9 782 41.7
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 2.7e-130 470.3 805 40.4
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 3.6e-130 469.9 840 39.6
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 1.0e-129 468.4 706 43.6
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 1.8e-129 467.6 764 40.8
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 1.2e-128 464.9 760 42.2
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 6.3e-127 459.1 723 43.4
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 4.1e-126 456.4 592 46.3
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 1.3e-124 451.4 557 50.3
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 1.8e-118 431.0 709 42.5
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 7.5e-112 409.1 725 40.8
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 2.6e-104 384.0 312 66.7
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 2.7e-101 374.0 338 60.9
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 9.2e-94 349.0 744 35.8
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 2.8e-90 337.4 487 44.4
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.1e-86 325.5 392 52.6
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 4.6e-85 320.1 244 68.9
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 1.3e-84 318.5 262 62.6
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 1.8e-81 308.1 631 37.9
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 8.7e-76 289.3 264 57.6
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 4.3e-75 287.0 324 49.7
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 3.5e-61 240.7 158 79.7
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 5.1e-52 210.3 434 34.6
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 4.3e-51 207.2 367 39.0
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 9.3e-46 189.5 157 66.9
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 1.6e-42 178.7 327 39.4
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 2.5e-35 154.8 181 50.8
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 5.9e-32 143.7 102 67.6
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 2.4e-25 121.7 186 39.8
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 1.7e-18 99.0 105 52.4
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 1.7e-18 99.0 156 42.3
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 3.7e-18 97.8 83 59.0
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 2.0e-16 92.0 87 49.4
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 2.0e-08 65.5 261 25.3


User provided reference genes

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