Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 3.1e-79 298.5 162 100.0
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 3.9e-42 175.3 130 80.8
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 4.8e-40 168.3 130 73.1
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 2.2e-37 159.5 121 68.6
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 3.8e-37 158.7 129 71.3
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 3.8e-37 158.7 108 85.2
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 6.5e-37 157.9 108 78.7
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 6.5e-37 157.9 108 78.7
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 3.6e-35 152.1 131 67.2
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 1.8e-34 149.8 108 83.3
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 8.8e-34 147.5 120 65.0
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 1.1e-33 147.1 121 70.2
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 1.1e-33 147.1 108 77.8
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 1.1e-33 147.1 110 80.0
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 1.5e-33 146.7 123 68.3
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 2.0e-33 146.4 124 69.4
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 2.6e-33 146.0 121 73.6
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 2.6e-33 146.0 109 76.1
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 3.3e-33 145.6 120 64.2
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 1.4e-31 140.2 131 63.4
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 3.1e-31 139.0 129 63.6
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 9.1e-31 137.5 129 63.6
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 9.1e-31 137.5 109 76.1
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 1.2e-30 137.1 123 66.7
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 1.2e-30 137.1 109 75.2
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 1.6e-30 136.7 111 74.8
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 2.0e-30 136.3 122 69.7
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 2.6e-30 136.0 112 74.1
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 3.5e-30 135.6 108 75.0
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 3.5e-30 135.6 155 62.6
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 5.9e-30 134.8 107 76.6
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 1.0e-29 134.0 110 75.5
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.3e-29 133.7 110 72.7
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 1.7e-29 133.3 124 67.7
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 1.7e-29 133.3 111 74.8
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 2.2e-29 132.9 127 64.6
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 2.2e-29 132.9 114 76.3
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 2.9e-29 132.5 108 75.0
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 2.9e-29 132.5 108 75.0
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 2.9e-29 132.5 108 75.0
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 2.9e-29 132.5 121 65.3
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 3.8e-29 132.1 129 61.2
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 3.8e-29 132.1 129 61.2
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 3.8e-29 132.1 129 61.2
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 3.8e-29 132.1 112 72.3
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 5.0e-29 131.7 125 65.6
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 6.5e-29 131.3 111 76.6
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 1.1e-28 130.6 123 62.6
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 1.9e-28 129.8 127 65.4
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 1.9e-28 129.8 110 66.4
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 1.9e-28 129.8 110 66.4
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 2.5e-28 129.4 121 66.9
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 2.5e-28 129.4 121 66.9
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 3.2e-28 129.0 122 68.9
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 4.2e-28 128.6 124 62.1
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 4.2e-28 128.6 120 64.2
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 5.5e-28 128.3 113 68.1
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 5.5e-28 128.3 111 67.6
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 7.2e-28 127.9 108 73.1
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 7.2e-28 127.9 121 59.5
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 9.4e-28 127.5 122 68.0
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 9.4e-28 127.5 108 71.3
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 9.4e-28 127.5 108 71.3
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 9.4e-28 127.5 107 73.8
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 9.4e-28 127.5 110 61.8
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 1.2e-27 127.1 127 58.3
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 1.2e-27 127.1 116 68.1
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.6e-27 126.7 112 64.3
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 2.1e-27 126.3 122 61.5
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 3.6e-27 125.6 114 69.3
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.6e-27 125.6 108 70.4
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 3.6e-27 125.6 110 72.7
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 4.7e-27 125.2 126 55.6
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 6.1e-27 124.8 109 63.3
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 8.0e-27 124.4 122 65.6
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 1.0e-26 124.0 122 59.8
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 1.0e-26 124.0 124 66.1
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 1.0e-26 124.0 121 66.9
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 1.4e-26 123.6 109 70.6
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 2.3e-26 122.9 108 68.5
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 2.3e-26 122.9 108 68.5
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 3.0e-26 122.5 110 67.3
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 4.0e-26 122.1 121 65.3
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 5.2e-26 121.7 113 65.5
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 5.2e-26 121.7 114 63.2
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 6.7e-26 121.3 109 62.4
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 6.7e-26 121.3 108 59.3
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 6.7e-26 121.3 121 66.1
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 8.8e-26 120.9 108 66.7
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 1.1e-25 120.6 123 62.6
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 1.5e-25 120.2 122 59.8
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 2.0e-25 119.8 127 62.2
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 2.0e-25 119.8 117 61.5
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 4.4e-25 118.6 109 57.8
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 4.4e-25 118.6 111 65.8
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 4.4e-25 118.6 124 60.5
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 7.5e-25 117.9 114 51.8
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 7.5e-25 117.9 113 65.5
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 9.7e-25 117.5 108 62.0
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 9.7e-25 117.5 114 50.9
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 9.7e-25 117.5 110 59.1
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 1.3e-24 117.1 102 55.9
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 1.7e-24 116.7 120 55.8
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 1.7e-24 116.7 116 49.1
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 1.7e-24 116.7 127 56.7
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 2.2e-24 116.3 102 55.9
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 2.2e-24 116.3 118 57.6
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 2.2e-24 116.3 122 59.0
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 2.8e-24 115.9 118 53.4
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 3.7e-24 115.5 104 53.8
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 3.7e-24 115.5 102 52.9
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 3.7e-24 115.5 114 49.1
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 3.7e-24 115.5 113 64.6
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 3.7e-24 115.5 126 54.8
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 4.8e-24 115.2 102 54.9
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 4.8e-24 115.2 102 54.9
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 4.8e-24 115.2 126 54.8
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 6.3e-24 114.8 118 58.5
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 8.2e-24 114.4 114 49.1
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 8.2e-24 114.4 114 49.1
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 8.2e-24 114.4 114 49.1
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 8.2e-24 114.4 114 49.1
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.1e-23 114.0 103 53.4
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 1.4e-23 113.6 116 63.8
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 1.8e-23 113.2 102 53.9
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 1.8e-23 113.2 102 53.9
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 1.8e-23 113.2 106 61.3
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 1.8e-23 113.2 123 61.8
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 4.1e-23 112.1 121 62.8
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 5.3e-23 111.7 107 65.4
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 9.1e-23 110.9 106 60.4
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 1.2e-22 110.5 126 57.1
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 1.6e-22 110.2 107 65.4
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 1.6e-22 110.2 112 67.9
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 2.7e-22 109.4 109 64.2
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 4.5e-22 108.6 114 48.2
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 4.5e-22 108.6 121 62.0
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 1.0e-21 107.5 107 65.4
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 1.3e-21 107.1 114 58.8
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 2.2e-21 106.3 107 54.2
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 2.9e-21 105.9 102 52.0
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 2.9e-21 105.9 109 61.5
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.5e-20 103.6 115 48.7
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.5e-20 103.6 115 48.7
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 1.5e-20 103.6 121 48.8
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 1.5e-20 103.6 108 64.8
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 2.5e-20 102.8 121 47.1
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 3.2e-20 102.4 122 49.2
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 3.2e-20 102.4 121 61.2
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 3.2e-20 102.4 102 52.9
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 7.2e-20 101.3 122 48.4
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 7.2e-20 101.3 122 48.4
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 9.4e-20 100.9 110 51.8
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.2e-19 100.5 116 49.1
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.6e-19 100.1 121 46.3
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 3.6e-19 99.0 121 46.3
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 4.7e-19 98.6 121 45.5
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 4.7e-19 98.6 121 45.5
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 8.0e-19 97.8 114 55.3
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 4.0e-18 95.5 114 56.1
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 5.2e-18 95.1 116 52.6
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 8.8e-18 94.4 108 56.5
MD14G1054500 Malus domestica HOM05D003630 ORTHO05D004151 1.5e-17 93.6 100 55.0
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 2.0e-17 93.2 116 44.8
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 3.4e-17 92.4 121 45.5
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 1.3e-16 90.5 125 55.2
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 1.7e-16 90.1 123 49.6
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 1.8e-15 86.7 125 47.2
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 2.4e-15 86.3 108 54.6
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 3.1e-15 85.9 139 39.6
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 9.1e-15 84.3 114 50.0
COL.COLO4_29750 Corchorus olitorius HOM05D003630 ORTHO05D004151 3.5e-14 82.4 44 90.9
SMO367G0919 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 2.9e-13 79.3 118 43.2
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 6.5e-13 78.2 150 36.7
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 6.1e-11 71.6 41 75.6
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 5.2e-10 68.6 158 34.2
Eucgr.D00606 Eucalyptus grandis HOM05D003630 ORTHO05D004151 1.2e-09 67.4 43 69.8
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 3.4e-09 65.9 141 31.9
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 5.7e-09 65.1 89 41.6
Eucgr.E03257 Eucalyptus grandis HOM05D003630 ORTHO05D004151 5.7e-09 65.1 43 67.4
Actinidia26134 Actinidia chinensis HOM05D003630 ORTHO05D004151 2.2e-08 63.2 41 73.2
ECA248G1596 Erigeron canadensis HOM05D000885 ORTHO05D008875 2.8e-08 62.8 72 56.9
AagrBONN_evm.TU.Sc2ySwM_362.1976 Anthoceros agrestis HOM05D003630 ORTHO05D004151 2.4e-07 59.7 205 26.3
Pp3c24_1050 Physcomitrium patens HOM05D003630 ORTHO05D004151 9.2e-07 57.8 151 31.1
Pp3c10_24000 Physcomitrium patens HOM05D003630 ORTHO05D004151 1.2e-06 57.4 154 31.2
MD05G1311800 Malus domestica HOM05D003630 ORTHO05D004151 2.7e-06 56.2 39 69.2
Os03g0342900 Oryza sativa ssp. japonica HOM05D002144 ORTHO05D002170 7.7e-06 54.7 39 61.5


User provided reference genes

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