Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 6.9e-92 340.5 157 100.0
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 1.3e-74 283.1 154 82.5
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 3.0e-71 271.9 154 79.9
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 3.0e-71 271.9 154 78.6
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 3.3e-70 268.5 154 79.2
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 5.3e-68 261.2 151 78.1
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 5.8e-67 257.7 153 79.1
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 2.2e-66 255.8 148 79.1
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 6.5e-66 254.2 151 78.1
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 1.9e-65 252.7 151 76.2
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 2.5e-65 252.3 150 76.0
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 5.5e-65 251.1 154 74.0
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 1.6e-64 249.6 157 75.8
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 2.1e-64 249.2 156 71.8
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 2.7e-64 248.8 151 76.2
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 6.0e-64 247.7 150 73.3
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 5.1e-63 244.6 150 74.0
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.1e-62 243.4 153 70.6
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 1.5e-62 243.0 150 74.0
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 2.5e-62 242.3 148 74.3
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 3.1e-60 235.3 150 72.0
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 5.3e-60 234.6 153 66.7
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 9.0e-60 233.8 150 71.3
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 1.5e-59 233.0 154 70.8
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 2.9e-58 228.8 150 69.3
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 8.5e-58 227.3 150 70.0
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 1.2e-56 223.4 150 68.0
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 1.2e-56 223.4 154 64.3
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 1.2e-56 223.4 150 68.7
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 1.6e-56 223.0 154 65.6
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 1.6e-56 223.0 154 65.6
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 2.1e-56 222.6 149 69.1
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 1.0e-55 220.3 150 68.0
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 1.0e-55 220.3 152 66.4
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 3.9e-55 218.4 150 67.3
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 6.7e-55 217.6 150 66.7
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 6.7e-55 217.6 150 66.7
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 8.7e-55 217.2 150 66.7
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 8.7e-55 217.2 152 66.4
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 2.5e-54 215.7 149 67.8
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 4.3e-54 214.9 150 64.7
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 5.7e-54 214.5 150 64.7
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 7.4e-54 214.2 156 62.8
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 9.7e-54 213.8 149 68.5
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 1.6e-53 213.0 156 64.7
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 9.1e-52 207.2 150 66.0
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 3.4e-51 205.3 154 59.1
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 3.4e-51 205.3 154 59.1
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 5.9e-51 204.5 155 61.3
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 7.7e-51 204.1 154 60.4
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 1.3e-50 203.4 151 60.9
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 1.7e-50 203.0 152 61.8
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 1.7e-50 203.0 152 61.8
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 6.5e-50 201.1 152 60.5
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 6.5e-50 201.1 152 60.5
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 6.5e-50 201.1 151 62.3
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 8.5e-50 200.7 118 75.4
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 1.4e-49 199.9 152 60.5
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 4.2e-49 198.4 150 58.7
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 9.4e-49 197.2 154 60.4
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 1.6e-48 196.4 152 60.5
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 2.1e-48 196.1 150 58.0
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 4.6e-48 194.9 151 64.2
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.0e-47 193.7 112 74.1
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 1.4e-47 193.4 151 59.6
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 2.3e-47 192.6 154 56.5
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 1.1e-46 190.3 152 57.2
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 1.5e-46 189.9 152 57.2
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 1.5e-46 189.9 127 67.7
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 2.2e-45 186.0 152 56.6
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 1.8e-44 183.0 151 57.6
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 1.8e-44 183.0 153 55.6
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 3.1e-44 182.2 152 55.3
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 9.1e-44 180.6 151 56.3
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 8.5e-42 174.1 153 56.2
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 1.0e-39 167.2 120 64.2
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 1.5e-38 163.3 158 52.5
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 8.2e-37 157.5 122 59.0
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 1.0e-34 150.6 100 68.0
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 2.0e-27 126.3 100 64.0
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 4.5e-27 125.2 155 37.4
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 1.4e-20 103.6 147 39.5
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 3.1e-20 102.4 152 38.8
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 6.8e-15 84.7 56 66.1
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 3.4e-14 82.4 57 59.6
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 1.8e-12 76.6 60 56.7
Pp3c24_16730 Physcomitrium patens HOM05D031660 ORTHO05D009870 7.3e-09 64.7 84 39.3


User provided reference genes

Program Settings