Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31389 Corchorus olitorius HOM05D000124 ORTHO05D000056 3.1e-84 315.1 156 100.0
Gohir.D05G160300 Gossypium hirsutum HOM05D000124 ORTHO05D000056 3.0e-39 165.6 252 44.4
Gohir.A05G157500 Gossypium hirsutum HOM05D000124 ORTHO05D000056 1.9e-38 162.9 265 43.0
Gorai.009G165400 Gossypium raimondii HOM05D000124 ORTHO05D000056 1.9e-38 162.9 265 43.0
Thecc.06G177600 Theobroma cacao HOM05D000124 ORTHO05D000056 4.3e-38 161.8 284 42.6
Duzib192G0631 Durio zibethinus HOM05D000124 ORTHO05D000056 1.1e-36 157.1 280 40.4
Duzib160G0225 Durio zibethinus HOM05D000124 ORTHO05D000056 2.0e-35 152.9 275 40.0
RcHm_v2.0_Chr5g0009741 Rosa chinensis HOM05D000124 ORTHO05D000056 4.1e-28 128.6 264 37.1
Gohir.D06G134600 Gossypium hirsutum HOM05D000124 ORTHO05D000056 9.1e-28 127.5 272 36.8
Gorai.010G156500 Gossypium raimondii HOM05D000124 ORTHO05D000056 9.1e-28 127.5 272 36.8
Gohir.A06G135200 Gossypium hirsutum HOM05D000124 ORTHO05D000056 2.6e-27 125.9 272 36.8
Prupe.4G055600 Prunus persica HOM05D000124 ORTHO05D000056 3.4e-27 125.6 265 35.8
Gorai.008G219300 Gossypium raimondii HOM05D000124 ORTHO05D000056 1.0e-26 124.0 255 36.9
Gohir.A10G029150 Gossypium hirsutum HOM05D000124 ORTHO05D000056 1.7e-26 123.2 255 36.9
Gohir.D10G029650 Gossypium hirsutum HOM05D000124 ORTHO05D000056 3.8e-26 122.1 255 36.9
FvH4_4g10480 Fragaria vesca HOM05D000124 ORTHO05D000056 8.5e-26 120.9 263 35.0
FAN12G2036 Fragaria x ananassa HOM05D000124 ORTHO05D000056 8.5e-26 120.9 263 35.0
FAN12G3507 Fragaria x ananassa HOM05D000124 ORTHO05D000056 8.5e-26 120.9 263 35.0
MD10G1286200 Malus domestica HOM05D000124 ORTHO05D000056 1.4e-25 120.2 244 35.7
Potri.004G051800 Populus trichocarpa HOM05D000124 ORTHO05D000056 4.2e-25 118.6 273 34.4
Potri.011G061800 Populus trichocarpa HOM05D000124 ORTHO05D000056 1.6e-24 116.7 283 33.9
QL05p043915 Quercus lobata HOM05D000124 ORTHO05D000056 6.1e-24 114.8 264 34.1
VMungo0540G0591 Vigna mungo HOM05D000124 ORTHO05D000056 6.1e-24 114.8 244 35.2
Haze_06324 Corylus avellana HOM05D000124 ORTHO05D000056 1.0e-23 114.0 272 33.1
CSS0015392 Camellia sinensis var. sinensis HOM05D000124 ORTHO05D000056 1.8e-23 113.2 267 33.7
FAN07G2015 Fragaria x ananassa HOM05D000124 ORTHO05D000056 3.0e-23 112.5 267 33.0
TAR626G0774 Trochodendron aralioides HOM05D000124 ORTHO05D000056 1.5e-22 110.2 277 31.0
Phvul.006G179700 Phaseolus vulgaris HOM05D000124 ORTHO05D000056 5.7e-22 108.2 257 32.3
Lj6g0020797 Lotus japonicus HOM05D000124 ORTHO05D000056 9.7e-22 107.5 103 56.3
CANSAT35G1970 Cannabis sativa HOM05D000124 ORTHO05D000056 1.3e-21 107.1 127 46.5
TWI38G1050 Tripterygium wilfordii HOM05D000124 ORTHO05D000056 1.3e-21 107.1 286 31.5
Glyma.13G233800 Glycine max HOM05D000124 ORTHO05D000056 2.2e-21 106.3 83 60.2
Manes.16G034200 Manihot esculenta HOM05D000124 ORTHO05D000056 2.2e-21 106.3 258 33.7
Atru.chr10.1749 Acer truncatum HOM05D000124 ORTHO05D000056 3.7e-21 105.5 136 47.8
Hma1.2p1_0608F.1_g188240 Hydrangea macrophylla HOM05D000124 ORTHO05D000056 6.3e-21 104.8 251 35.5
Actinidia07617 Actinidia chinensis HOM05D000124 ORTHO05D000056 1.1e-20 104.0 99 54.5
QL05p043957 Quercus lobata HOM05D000124 ORTHO05D000056 1.4e-20 103.6 80 63.8
Glyma.15G079200 Glycine max HOM05D000124 ORTHO05D000056 1.8e-20 103.2 126 45.2
Ciclev10018130m.g Citrus clementina HOM05D000124 ORTHO05D000056 9.1e-20 100.9 299 30.8
Rhsim12G0171800 Rhododendron simsii HOM05D000124 ORTHO05D000056 1.3e-18 97.1 83 56.6
TPR.G11756 Trifolium pratense HOM05D000124 ORTHO05D000056 2.2e-18 96.3 258 30.2
MELO3C007241.2 Cucumis melo HOM05D000124 ORTHO05D000056 2.9e-18 95.9 74 66.2
CsaV3_6G050570 Cucumis sativus L. HOM05D000124 ORTHO05D000056 2.9e-18 95.9 74 66.2
Dinv40626 Davidia involucrata HOM05D000124 ORTHO05D000056 2.9e-18 95.9 256 32.0
CiPaw.09G066100 Carya illinoinensis HOM05D000124 ORTHO05D000056 3.8e-18 95.5 269 32.3
Nn1g06350 Nelumbo nucifera HOM05D000124 ORTHO05D000056 3.8e-18 95.5 281 29.2
Aqoxy1G02227 Aquilegia oxysepala HOM05D000124 ORTHO05D000056 5.0e-18 95.1 279 29.0
Lsat_1_v5_gn_4_51260 Lactuca sativa HOM05D000124 ORTHO05D000056 6.5e-18 94.7 282 30.9
Medtr2g015050 Medicago truncatula HOM05D000124 ORTHO05D000056 1.1e-17 94.0 266 30.1
Oeu001092.1 Olea europaea HOM05D000124 ORTHO05D000056 1.1e-17 94.0 116 50.0
Lalb_Chr20g0121421 Lupinus albus HOM05D000124 ORTHO05D000056 1.4e-17 93.6 125 44.0
arahy.Tifrunner.gnm1.ann1.EAK3RU Arachis hypogaea HOM05D000124 ORTHO05D000056 1.9e-17 93.2 252 29.8
Sabra04G0032600 Salix brachista HOM05D000124 ORTHO05D000056 1.9e-17 93.2 248 33.5
Sed0011732 Sechium edule HOM05D000124 ORTHO05D000056 1.9e-17 93.2 75 66.7
ClCG01G023450 Citrullus lanatus HOM05D000124 ORTHO05D000056 2.5e-17 92.8 74 64.9
Migut.M01083 Erythranthe guttata HOM05D000124 ORTHO05D000056 7.2e-17 91.3 92 55.4
ECA234G3689 Erigeron canadensis HOM05D000124 ORTHO05D000056 2.1e-16 89.7 91 54.9
HanXRQChr07g0205971 Helianthus annuus HOM05D000124 ORTHO05D000056 3.6e-16 89.0 91 50.5
Lalb_Chr05g0218631 Lupinus albus HOM05D000124 ORTHO05D000056 6.1e-16 88.2 98 45.9
Eucgr.E03167 Eucalyptus grandis HOM05D000124 ORTHO05D000056 1.8e-15 86.7 77 50.6
Eucgr.E02652 Eucalyptus grandis HOM05D000124 ORTHO05D000056 2.3e-15 86.3 77 51.9
Sc05g0007310 Simmondsia chinensis HOM05D000124 ORTHO05D000056 2.3e-15 86.3 77 57.1
Psat1g200920 Pisum sativum HOM05D000124 ORTHO05D000056 3.0e-15 85.9 243 31.7
arahy.Tifrunner.gnm1.ann1.T22KDW Arachis hypogaea HOM05D000124 ORTHO05D000056 8.8e-15 84.3 101 42.6
Nitab4.5_0010493g0030 Nicotiana tabacum HOM05D000124 ORTHO05D000056 1.1e-14 84.0 86 54.7
Peaxi162Scf00042g00041 Petunia axillaris HOM05D000124 ORTHO05D000056 1.1e-14 84.0 259 29.7
PGR042G2265 Punica granatum HOM05D000124 ORTHO05D000056 1.1e-14 84.0 123 39.0
Cpa.g.sc7.36 Carica papaya HOM05D000124 ORTHO05D000056 1.5e-14 83.6 74 56.8
Manes.17G051700 Manihot esculenta HOM05D000124 ORTHO05D000056 1.5e-14 83.6 81 53.1
MBI07_g06439_MAGBIO Magnolia biondii HOM05D000124 ORTHO05D000056 2.6e-14 82.8 89 49.4
SalBow8G3073 Salvia bowleyana HOM05D000124 ORTHO05D000056 2.6e-14 82.8 66 62.1
PSO541G4710 Papaver somniferum HOM05D000124 ORTHO05D000056 3.3e-14 82.4 88 46.6
MD05G1306800 Malus domestica HOM05D000124 ORTHO05D000056 7.4e-14 81.3 217 31.8
PSO675G4826 Papaver somniferum HOM05D000124 ORTHO05D000056 9.7e-14 80.9 115 39.1
Nitab4.5_0000376g0050 Nicotiana tabacum HOM05D000124 ORTHO05D000056 1.3e-13 80.5 86 50.0
Cc02_g14250 Coffea canephora HOM05D000124 ORTHO05D000056 2.2e-13 79.7 74 56.8
DCAR_006584 Daucus carota HOM05D000124 ORTHO05D000056 2.2e-13 79.7 83 49.4
ATR0602G210 Amborella trichopoda HOM05D000124 ORTHO05D000056 3.7e-13 79.0 76 48.7
EL10Ac8g20470 Beta vulgaris HOM05D000124 ORTHO05D000056 8.2e-13 77.8 108 37.0
CiPaw.10G054600 Carya illinoinensis HOM05D000124 ORTHO05D000056 1.4e-12 77.0 78 52.6
AUR62031117 Chenopodium quinoa HOM05D000124 ORTHO05D000056 1.8e-12 76.6 120 35.8
AUR62014912 Chenopodium quinoa HOM05D000124 ORTHO05D000056 3.1e-12 75.9 126 35.7
PGSC0003DMG400010719 Solanum tuberosum HOM05D000124 ORTHO05D000056 2.0e-11 73.2 75 49.3
Solyc02g077360.1 Solanum lycopersicum HOM05D000124 ORTHO05D000056 2.6e-11 72.8 76 48.7
Sopen02g022260 Solanum pennellii HOM05D000124 ORTHO05D000056 2.6e-11 72.8 76 48.7
THA.LOC104806143 Tarenaya hassleriana HOM05D000124 ORTHO05D000056 1.7e-10 70.1 66 51.5
Ca_00408_v3 Cicer arietinum L. HOM05D000124 ORTHO05D000056 7.2e-09 64.7 75 44.0
DCAR_028029 Daucus carota HOM05D000124 ORTHO05D000056 1.2e-08 63.9 96 39.6
Zm00001eb295930 Zea mays HOM05D000124 ORTHO05D000056 6.7e-07 58.2 67 47.8
Os05g0564700 Oryza sativa ssp. japonica HOM05D000124 ORTHO05D301207 8.8e-07 57.8 144 27.1
Cfa000552 Carpinus fangiana HOM05D000124 ORTHO05D000056 1.5e-06 57.0 60 53.3


User provided reference genes

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