Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31347 Corchorus olitorius HOM05D007489 ORTHO05D008037 0.0e+00 1446.8 878 100.0
Thecc.06G175600 Theobroma cacao HOM05D007489 ORTHO05D008037 2.8e-190 669.8 860 53.5
Duzib192G0524 Durio zibethinus HOM05D007489 ORTHO05D008037 2.0e-180 637.1 916 49.8
Duzib235G0638 Durio zibethinus HOM05D007489 ORTHO05D008037 8.6e-176 621.7 917 48.4
Gorai.011G033000 Gossypium raimondii HOM05D007489 ORTHO05D008037 5.6e-159 565.8 880 45.2
Gohir.D10G031400 Gossypium hirsutum HOM05D007489 ORTHO05D008037 2.7e-153 547.0 916 43.6
Gohir.A10G030500 Gossypium hirsutum HOM05D007489 ORTHO05D008037 1.8e-133 481.1 879 41.5
Manes.16G035700 Manihot esculenta HOM05D007489 ORTHO05D008037 3.0e-59 234.6 973 29.4
Prupe.4G057700 Prunus persica HOM05D007489 ORTHO05D008037 8.1e-57 226.5 934 29.1
CSS0034374 Camellia sinensis var. sinensis HOM05D007489 ORTHO05D008037 4.4e-55 220.7 929 30.8
TAR627G1016 Trochodendron aralioides HOM05D007489 ORTHO05D008037 1.6e-52 212.2 931 28.4
Haze_06275 Corylus avellana HOM05D007489 ORTHO05D008037 2.7e-52 211.5 976 27.6
Potri.011G063500 Populus trichocarpa HOM05D007489 ORTHO05D008037 3.3e-50 204.5 887 28.5
Sabra11G0045300 Salix brachista HOM05D007489 ORTHO05D008037 4.7e-49 200.7 945 27.8
PGR004G0633 Punica granatum HOM05D007489 ORTHO05D008037 2.5e-42 178.3 156 62.8
MD10G1283800 Malus domestica HOM05D007489 ORTHO05D008037 5.6e-42 177.2 931 27.8
Lj1A1196T41 Lonicera japonica HOM05D007489 ORTHO05D008037 3.6e-41 174.5 912 28.3
RcHm_v2.0_Chr7g0216741 Rosa chinensis HOM05D007489 ORTHO05D008037 9.9e-39 166.4 935 26.2
Hma1.2p1_0155F.1_g068400 Hydrangea macrophylla HOM05D007489 ORTHO05D008037 2.9e-38 164.9 891 29.7
RcHm_v2.0_Chr7g0215591 Rosa chinensis HOM05D007489 ORTHO05D008037 5.4e-37 160.6 958 29.9
MELO3C007230.2 Cucumis melo HOM05D007489 ORTHO05D008037 9.3e-37 159.8 156 55.1
Dinv40650 Davidia involucrata HOM05D007489 ORTHO05D008037 3.5e-36 157.9 891 26.3
ClCG01G023550 Citrullus lanatus HOM05D007489 ORTHO05D008037 1.0e-35 156.4 172 52.9
arahy.Tifrunner.gnm1.ann1.X1E7Z2 Arachis hypogaea HOM05D007489 ORTHO05D008037 6.6e-35 153.7 161 52.8
Lalb_Chr16g0384211 Lupinus albus HOM05D007489 ORTHO05D008037 6.6e-35 153.7 161 52.8
Rhsim02G0140400 Rhododendron simsii HOM05D007489 ORTHO05D008037 6.6e-35 153.7 956 25.6
arahy.Tifrunner.gnm1.ann1.S0ULK2 Arachis hypogaea HOM05D007489 ORTHO05D008037 8.7e-35 153.3 161 51.6
PGR004G2208 Punica granatum HOM05D007489 ORTHO05D008037 8.7e-35 153.3 128 64.8
Atru.chr10.1727 Acer truncatum HOM05D007489 ORTHO05D008037 2.5e-34 151.8 132 61.4
FvH4_5g26040 Fragaria vesca HOM05D007489 ORTHO05D008037 3.3e-34 151.4 933 25.9
FAN08G0692 Fragaria x ananassa HOM05D007489 ORTHO05D008037 9.6e-34 149.8 958 25.1
PSO063G1126 Papaver somniferum HOM05D007489 ORTHO05D008037 1.8e-32 145.6 153 56.9
Sed0003654 Sechium edule HOM05D007489 ORTHO05D008037 1.8e-32 145.6 166 48.2
FAN04G2784 Fragaria x ananassa HOM05D007489 ORTHO05D008037 2.0e-31 142.1 959 24.2
FAN18G0613 Fragaria x ananassa HOM05D007489 ORTHO05D008037 3.4e-31 141.4 948 26.1
VMungo0251G2273 Vigna mungo HOM05D007489 ORTHO05D008037 7.6e-31 140.2 137 51.8
Ca_26049_v3 Cicer arietinum L. HOM05D007489 ORTHO05D008037 1.7e-30 139.0 162 50.0
Hund23951 Selenicereus undatus HOM05D007489 ORTHO05D008037 2.9e-30 138.3 158 51.9
CANSAT54G0123 Cannabis sativa HOM05D007489 ORTHO05D008037 1.1e-29 136.3 153 51.0
Sc05g0007220 Simmondsia chinensis HOM05D007489 ORTHO05D008037 1.1e-29 136.3 939 24.3
Glyma.07G204500 Glycine max HOM05D007489 ORTHO05D008037 1.6e-28 132.5 883 25.1
Lsat_1_v5_gn_4_50401 Lactuca sativa HOM05D007489 ORTHO05D008037 2.1e-28 132.1 149 53.7
CsaV3_6G050690 Cucumis sativus L. HOM05D007489 ORTHO05D008037 3.0e-27 128.3 930 24.6
Nitab4.5_0000376g0220 Nicotiana tabacum HOM05D007489 ORTHO05D008037 5.6e-26 124.0 131 56.5
HanXRQChr11g0327141 Helianthus annuus HOM05D007489 ORTHO05D008037 7.4e-26 123.6 138 50.7
Nn1g09012 Nelumbo nucifera HOM05D007489 ORTHO05D008037 1.6e-25 122.5 922 24.0
Medtr4g087875 Medicago truncatula HOM05D007489 ORTHO05D008037 2.8e-25 121.7 915 24.2
Aqoxy5G02160 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 1.1e-24 119.8 917 24.9
MBI06_g31401_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 4.0e-24 117.9 132 50.0
TPR.G16271 Trifolium pratense HOM05D007489 ORTHO05D008037 5.3e-24 117.5 921 24.1
Lj4g0021888 Lotus japonicus HOM05D007489 ORTHO05D008037 1.5e-23 115.9 925 23.2
Phvul.003G057800 Phaseolus vulgaris HOM05D007489 ORTHO05D008037 2.0e-23 115.5 932 24.4
DCAR_007972 Daucus carota HOM05D007489 ORTHO05D008037 5.8e-23 114.0 138 48.6
ECA234G3308 Erigeron canadensis HOM05D007489 ORTHO05D008037 7.6e-23 113.6 902 23.6
FAN13G1982 Fragaria x ananassa HOM05D007489 ORTHO05D008037 7.6e-23 113.6 1019 22.7
Sp7g15530 Schrenkiella parvula HOM05D010718 ORTHO05D008037 2.2e-22 112.1 158 45.6
unitig_0.g132 Utricularia gibba HOM05D007489 ORTHO05D008037 1.1e-21 109.8 135 48.9
Nitab4.5_0001928g0060 Nicotiana tabacum HOM05D007489 ORTHO05D008037 1.9e-21 109.0 131 51.1
Peaxi162Scf00223g01422 Petunia axillaris HOM05D007489 ORTHO05D008037 2.5e-21 108.6 94 61.7
Thhalv10024499m.g Eutrema salsugineum HOM05D010718 ORTHO05D008037 2.1e-20 105.5 901 23.8
SEGI_30603 Sequoiadendron giganteum HOM05D007489 ORTHO05D008037 2.7e-20 105.1 133 45.1
ATR0602G208 Amborella trichopoda HOM05D007489 ORTHO05D008037 4.6e-20 104.4 153 43.1
AUR62036546 Chenopodium quinoa HOM05D007489 ORTHO05D008037 6.0e-20 104.0 168 42.3
PSO782G2467 Papaver somniferum HOM05D007489 ORTHO05D008037 6.0e-20 104.0 111 55.9
GSVIVG01021171001 Vitis vinifera HOM05D007489 ORTHO05D008037 1.0e-19 103.2 94 59.6
SalBow6G3268 Salvia bowleyana HOM05D007489 ORTHO05D008037 1.8e-19 102.4 154 43.5
SalBow6G6000 Salvia bowleyana HOM05D007489 ORTHO05D008037 1.8e-19 102.4 154 43.5
Oeu041109.2 Olea europaea HOM05D007489 ORTHO05D008037 5.1e-19 100.9 132 48.5
Zm00001eb152860 Zea mays HOM05D007489 ORTHO05D008037 5.1e-19 100.9 158 44.9
AL7G35790 Arabidopsis lyrata HOM05D010718 ORTHO05D008037 6.7e-19 100.5 930 22.7
Os01g0755100 Oryza sativa ssp. japonica HOM05D007489 ORTHO05D008037 6.7e-19 100.5 139 45.3
CAN.G79.55 Capsicum annuum HOM05D007489 ORTHO05D008037 1.5e-18 99.4 924 24.6
CiPaw.10G057000 Carya illinoinensis HOM05D007489 ORTHO05D008037 4.3e-18 97.8 417 28.5
Sopen02g022090 Solanum pennellii HOM05D007489 ORTHO05D008037 1.6e-17 95.9 921 27.9
BcaC06g30581 Brassica carinata HOM05D010718 ORTHO05D008037 8.2e-17 93.6 164 42.1
A03p51330 Brassica napus HOM05D010718 ORTHO05D008037 8.2e-17 93.6 612 25.8
BolC1t01218H Brassica oleracea HOM05D010718 ORTHO05D008037 1.1e-16 93.2 146 44.5
A01p10500 Brassica napus HOM05D010718 ORTHO05D008037 1.8e-16 92.4 146 44.5
Aa31LG6G1240 Aethionema arabicum HOM05D010718 ORTHO05D008037 9.0e-16 90.1 889 22.8
C01p12440 Brassica napus HOM05D010718 ORTHO05D008037 9.0e-16 90.1 139 45.3
AT4G18490 Arabidopsis thaliana HOM05D010718 ORTHO05D008037 1.2e-15 89.7 912 24.0
BraA01t00996Z Brassica rapa HOM05D010718 ORTHO05D008037 4.5e-15 87.8 146 43.2
AUR62031141 Chenopodium quinoa HOM05D007489 ORTHO05D008037 4.5e-15 87.8 101 48.5
Aqoxy534s001 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 2.9e-14 85.1 118 44.1
CARHR225330 Cardamine hirsuta HOM05D010718 ORTHO05D008037 1.9e-13 82.4 931 27.0
Migut.J01535 Erythranthe guttata HOM05D007489 ORTHO05D008037 1.9e-13 82.4 102 46.1
HPP92_007965 Vanilla planifolia HOM05D007489 ORTHO05D008037 1.6e-12 79.3 114 41.2
Glyma.13G171600 Glycine max HOM05D007489 ORTHO05D008037 2.1e-12 79.0 94 45.7
HPP92_008016 Vanilla planifolia HOM05D007489 ORTHO05D008037 3.5e-12 78.2 104 43.3
BcaC09g51502 Brassica carinata HOM05D010718 ORTHO05D008037 4.6e-12 77.8 160 39.4
MD05G1304800 Malus domestica HOM05D007489 ORTHO05D008037 1.8e-11 75.9 116 42.2
Ciclev10017982m.g Citrus clementina HOM05D007489 ORTHO05D008037 9.0e-08 63.5 120 45.0
SGA_v2.0_scaffold66G22379 Striga asiatica HOM05D007489 ORTHO05D008037 1.5e-07 62.8 67 53.7
Ah.10g026690 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.9e-07 60.8 41 68.3
BraA03t14214Z Brassica rapa HOM05D010718 ORTHO05D008037 8.5e-06 57.0 613 23.8


User provided reference genes

Program Settings